Wall clock time and date at job start Tue Mar 31 2020 00:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48505 * 109.47081 * 240.00336 * 3 2 1 5 5 H 1.48500 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47228 * 120.00353 * 3 2 1 7 7 C 1.38806 * 120.00584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00546 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00210 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.52523 * 325.08738 * 10 9 7 12 12 C 1.53043 * 109.49360 * 85.16510 * 10 9 7 13 13 C 1.53045 * 109.53716 * 181.31543 * 12 10 9 14 14 C 1.53627 * 109.23990 * 298.51312 * 13 12 10 15 15 N 1.46917 * 108.54302 * 54.85613 * 14 13 12 16 16 C 1.34784 * 120.62997 * 126.37096 * 15 14 13 17 17 O 1.21277 * 119.99763 * 179.71836 * 16 15 14 18 18 C 1.50700 * 120.00033 * 359.71360 * 16 15 14 19 19 H 1.09006 * 115.52675 * 325.50207 * 18 16 15 20 20 C 1.52995 * 117.43957 * 110.96303 * 18 16 15 21 21 H 1.09004 * 119.29940 * 356.30822 * 20 18 16 22 22 C 1.54264 * 118.20044 * 201.22035 * 20 18 16 23 23 C 1.54890 * 104.20099 * 272.21819 * 22 20 18 24 24 C 1.57042 * 102.87982 * 38.08296 * 23 22 20 25 25 C 1.52996 * 117.46023 * 180.02562 * 18 16 15 26 26 H 1.09002 * 119.29835 * 3.73301 * 25 18 16 27 27 C 1.46926 * 118.74103 * 306.09111 * 15 14 13 28 28 H 0.97000 * 120.00493 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99668 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46183 * 301.33823 * 12 10 9 31 31 H 1.08996 * 109.46022 * 61.31356 * 12 10 9 32 32 H 1.08999 * 109.49544 * 58.58595 * 13 12 10 33 33 H 1.09000 * 109.49552 * 178.68222 * 13 12 10 34 34 H 1.08995 * 109.73772 * 295.11346 * 14 13 12 35 35 H 1.09004 * 109.65888 * 174.55007 * 14 13 12 36 36 H 1.09005 * 110.48418 * 30.89470 * 22 20 18 37 37 H 1.09001 * 110.48787 * 153.53288 * 22 20 18 38 38 H 1.08999 * 110.75817 * 156.25481 * 23 22 20 39 39 H 1.09000 * 110.75145 * 279.62908 * 23 22 20 40 40 H 1.09002 * 111.59628 * 203.34838 * 24 23 22 41 41 H 1.09005 * 110.34325 * 80.03989 * 24 23 22 42 42 H 1.08997 * 109.59068 * 173.65283 * 27 15 14 43 43 H 1.09005 * 109.58530 * 294.07716 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9695 -3.5507 -0.5902 12 6 2.4201 -4.0388 1.4355 13 6 3.2139 -5.3473 1.4327 14 6 2.3438 -6.4660 0.8397 15 7 1.8769 -6.0412 -0.4869 16 6 2.0787 -6.8205 -1.5680 17 8 1.6839 -6.4609 -2.6568 18 6 2.7950 -8.1384 -1.4237 19 1 3.5875 -8.1629 -0.6756 20 6 1.9728 -9.4132 -1.6223 21 1 0.8999 -9.3340 -1.7981 22 6 2.5062 -10.7269 -1.0145 23 6 3.4310 -11.3062 -2.1138 24 6 4.1244 -10.0245 -2.6991 25 6 2.9931 -8.9760 -2.6886 26 1 2.6719 -8.5747 -3.6498 27 6 1.1802 -4.7537 -0.6118 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 3.0245 -3.2483 1.8802 31 1 1.5076 -4.1692 2.0172 32 1 4.1142 -5.2253 0.8306 33 1 3.4913 -5.6066 2.4545 34 1 1.4867 -6.6484 1.4878 35 1 2.9335 -7.3779 0.7449 36 1 3.0739 -10.5242 -0.1063 37 1 1.6846 -11.4125 -0.8068 38 1 4.1717 -11.9784 -1.6807 39 1 2.8473 -11.8152 -2.8808 40 1 4.4814 -10.1902 -3.7156 41 1 4.9434 -9.7082 -2.0530 42 1 1.0016 -4.5354 -1.6646 43 1 0.2299 -4.7993 -0.0797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998839996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:05 Heat of formation + Delta-G solvation = -5.017244 kcal Electronic energy + Delta-G solvation = -21937.901877 eV Core-core repulsion = 18790.473154 eV Total energy + Delta-G solvation = -3147.428722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57636 -38.85614 -37.07197 -34.46260 -32.26753 -31.80976 -31.15672 -28.53218 -28.40325 -25.64434 -24.24268 -23.02546 -22.02985 -21.02433 -19.90750 -19.82264 -18.80289 -17.29850 -17.17802 -16.11641 -15.42819 -14.99744 -14.70523 -14.44938 -14.04153 -13.81940 -13.54865 -13.41316 -13.26204 -12.96304 -12.84873 -12.55275 -12.22618 -11.68510 -11.54913 -11.40106 -11.14972 -11.09733 -10.93062 -10.88710 -10.65966 -10.41853 -10.34132 -10.27658 -10.09532 -9.95186 -9.72138 -9.50504 -8.90317 -8.37195 -6.98468 -5.77076 -3.06778 2.54023 3.06811 3.44434 3.48837 3.49831 3.57199 4.19725 4.45640 4.48845 4.59331 4.76405 4.90739 4.95619 5.02930 5.12447 5.16565 5.21326 5.30487 5.33241 5.44578 5.53789 5.55576 5.58057 5.70238 5.73249 5.76620 5.80016 5.81334 5.87517 6.03479 6.06125 6.15675 6.16935 6.26451 6.40162 6.56047 6.72949 6.89048 7.05498 7.61003 7.69258 8.34876 8.41289 9.51968 10.07335 10.42536 11.45408 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.003442 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.996109 B = 8133.623304 C = 8345.061927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.108 3.892 15 N -0.600 5.600 16 C 0.541 3.459 17 O -0.542 6.542 18 C -0.160 4.160 19 H 0.121 0.879 20 C -0.139 4.139 21 H 0.114 0.886 22 C -0.095 4.095 23 C -0.123 4.123 24 C -0.097 4.097 25 C -0.133 4.133 26 H 0.121 0.879 27 C 0.106 3.894 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -23.308 0.980 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.015 4.015 15 N -0.333 5.333 16 C 0.329 3.671 17 O -0.420 6.420 18 C -0.181 4.181 19 H 0.138 0.862 20 C -0.157 4.157 21 H 0.132 0.868 22 C -0.133 4.133 23 C -0.160 4.160 24 C -0.134 4.134 25 C -0.152 4.152 26 H 0.139 0.861 27 C -0.017 4.017 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.822 -22.938 0.381 23.934 hybrid contribution 0.135 1.144 0.253 1.180 sum 6.958 -21.794 0.633 22.886 Atomic orbital electron populations 1.69647 1.05115 1.25857 1.57421 1.24745 0.95522 0.97700 1.02828 0.86260 0.78527 0.83487 0.77855 1.21214 1.21663 1.21267 1.19166 0.90948 0.83910 1.43058 0.91212 1.42304 1.05797 0.99516 1.88598 1.20472 0.94637 0.85971 0.93158 0.93239 1.22282 0.99601 0.95271 1.00622 1.22025 0.98803 0.96048 1.00405 1.21883 0.98380 0.97605 0.83617 1.48020 1.57401 1.20322 1.07556 1.19551 0.79121 0.84614 0.83803 1.90691 1.51568 1.73619 1.26092 1.22403 1.02888 0.90380 1.02462 0.86151 1.23241 0.97615 0.91934 1.02937 0.86827 1.21981 0.98973 0.94293 0.98020 1.23054 0.98088 0.97104 0.97773 1.22385 0.96286 0.93282 1.01494 1.23257 0.98524 0.99238 0.94147 0.86119 1.22010 0.94994 0.81354 1.03307 0.93397 0.78194 0.91571 0.92477 0.91860 0.91387 0.91372 0.90127 0.91171 0.90880 0.91303 0.91148 0.90697 0.91252 0.88952 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.34 5.50 -17.44 -0.10 -0.44 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -18.26 5.12 -53.31 -0.27 -18.53 16 10 C 0.17 3.43 2.92 -67.81 -0.20 3.23 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.14 -2.36 5.47 -26.69 -0.15 -2.51 16 13 C -0.13 -1.72 6.10 -26.38 -0.16 -1.88 16 14 C 0.11 1.27 6.37 -3.49 -0.02 1.25 16 15 N -0.60 -9.19 2.97 -172.51 -0.51 -9.70 16 16 C 0.54 8.57 7.48 -10.98 -0.08 8.49 16 17 O -0.54 -10.75 15.74 5.56 0.09 -10.67 16 18 C -0.16 -1.85 4.65 -91.78 -0.43 -2.27 16 19 H 0.12 1.16 6.58 -51.93 -0.34 0.82 16 20 C -0.14 -1.37 6.64 -89.48 -0.59 -1.96 16 21 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 22 C -0.10 -0.69 6.63 -25.07 -0.17 -0.85 16 23 C -0.12 -0.81 6.96 -23.54 -0.16 -0.98 16 24 C -0.10 -0.77 6.79 -23.89 -0.16 -0.93 16 25 C -0.13 -1.43 6.34 -89.49 -0.57 -2.00 16 26 H 0.12 1.52 7.78 -51.93 -0.40 1.11 16 27 C 0.11 1.95 5.90 -3.71 -0.02 1.93 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.38 10.29 7.80 -40.82 -0.32 9.97 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.74 5.52 -51.93 -0.29 0.46 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.92 7.01 -51.93 -0.36 1.56 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -32.13 340.19 -10.00 -42.13 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.18 Total: 7.48 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.96 Total: -5.78 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.06 Total: -55.83 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.13 -10.00 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998839996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds