Wall clock time and date at job start Tue Mar 31 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48505 * 109.47081 * 240.00336 * 3 2 1 5 5 H 1.48500 * 109.47212 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47228 * 120.00353 * 3 2 1 7 7 C 1.38806 * 120.00584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00546 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00210 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.52523 * 325.08738 * 10 9 7 12 12 C 1.53043 * 109.49360 * 85.16510 * 10 9 7 13 13 C 1.53045 * 109.53716 * 181.31543 * 12 10 9 14 14 C 1.53627 * 109.23990 * 298.51312 * 13 12 10 15 15 N 1.46917 * 108.54302 * 54.85613 * 14 13 12 16 16 C 1.34784 * 120.62997 * 126.37096 * 15 14 13 17 17 O 1.21277 * 119.99763 * 179.71836 * 16 15 14 18 18 C 1.50700 * 120.00033 * 359.71360 * 16 15 14 19 19 H 1.09006 * 115.52675 * 325.50207 * 18 16 15 20 20 C 1.52995 * 117.43957 * 110.96303 * 18 16 15 21 21 H 1.09004 * 119.29940 * 356.30822 * 20 18 16 22 22 C 1.54264 * 118.20044 * 201.22035 * 20 18 16 23 23 C 1.54890 * 104.20099 * 272.21819 * 22 20 18 24 24 C 1.57042 * 102.87982 * 38.08296 * 23 22 20 25 25 C 1.52996 * 117.46023 * 180.02562 * 18 16 15 26 26 H 1.09002 * 119.29835 * 3.73301 * 25 18 16 27 27 C 1.46926 * 118.74103 * 306.09111 * 15 14 13 28 28 H 0.97000 * 120.00493 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99668 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.46183 * 301.33823 * 12 10 9 31 31 H 1.08996 * 109.46022 * 61.31356 * 12 10 9 32 32 H 1.08999 * 109.49544 * 58.58595 * 13 12 10 33 33 H 1.09000 * 109.49552 * 178.68222 * 13 12 10 34 34 H 1.08995 * 109.73772 * 295.11346 * 14 13 12 35 35 H 1.09004 * 109.65888 * 174.55007 * 14 13 12 36 36 H 1.09005 * 110.48418 * 30.89470 * 22 20 18 37 37 H 1.09001 * 110.48787 * 153.53288 * 22 20 18 38 38 H 1.08999 * 110.75817 * 156.25481 * 23 22 20 39 39 H 1.09000 * 110.75145 * 279.62908 * 23 22 20 40 40 H 1.09002 * 111.59628 * 203.34838 * 24 23 22 41 41 H 1.09005 * 110.34325 * 80.03989 * 24 23 22 42 42 H 1.08997 * 109.59068 * 173.65283 * 27 15 14 43 43 H 1.09005 * 109.58530 * 294.07716 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9695 -3.5507 -0.5902 12 6 2.4201 -4.0388 1.4355 13 6 3.2139 -5.3473 1.4327 14 6 2.3438 -6.4660 0.8397 15 7 1.8769 -6.0412 -0.4869 16 6 2.0787 -6.8205 -1.5680 17 8 1.6839 -6.4609 -2.6568 18 6 2.7950 -8.1384 -1.4237 19 1 3.5875 -8.1629 -0.6756 20 6 1.9728 -9.4132 -1.6223 21 1 0.8999 -9.3340 -1.7981 22 6 2.5062 -10.7269 -1.0145 23 6 3.4310 -11.3062 -2.1138 24 6 4.1244 -10.0245 -2.6991 25 6 2.9931 -8.9760 -2.6886 26 1 2.6719 -8.5747 -3.6498 27 6 1.1802 -4.7537 -0.6118 28 1 -0.4851 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 3.0245 -3.2483 1.8802 31 1 1.5076 -4.1692 2.0172 32 1 4.1142 -5.2253 0.8306 33 1 3.4913 -5.6066 2.4545 34 1 1.4867 -6.6484 1.4878 35 1 2.9335 -7.3779 0.7449 36 1 3.0739 -10.5242 -0.1063 37 1 1.6846 -11.4125 -0.8068 38 1 4.1717 -11.9784 -1.6807 39 1 2.8473 -11.8152 -2.8808 40 1 4.4814 -10.1902 -3.7156 41 1 4.9434 -9.7082 -2.0530 42 1 1.0016 -4.5354 -1.6646 43 1 0.2299 -4.7993 -0.0797 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998839996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:04 Heat of formation + Delta-G solvation = -24.627717 kcal Electronic energy + Delta-G solvation = -21938.752250 eV Core-core repulsion = 18790.473154 eV Total energy + Delta-G solvation = -3148.279096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66143 -39.89429 -38.44126 -36.22770 -33.90064 -32.80343 -32.52787 -30.16821 -29.11369 -26.87117 -26.03317 -24.27864 -23.41109 -21.78439 -21.17918 -20.63334 -20.02486 -19.18483 -18.43328 -17.27598 -16.85144 -16.27782 -15.99821 -15.61409 -15.37647 -15.24481 -15.11487 -14.73601 -14.34559 -14.07059 -13.89761 -13.73524 -13.62926 -12.94777 -12.85893 -12.45200 -12.35075 -12.26349 -12.21190 -12.17345 -11.94958 -11.86210 -11.74031 -11.68061 -11.65450 -11.12983 -10.93632 -10.85280 -10.60745 -9.71458 -9.06247 -7.97973 -5.28116 1.37931 1.44547 1.48114 1.54079 1.86411 2.53989 2.69419 3.31683 3.35564 3.69344 3.73615 3.78830 3.88623 3.99047 4.06752 4.16145 4.19603 4.25657 4.31904 4.33206 4.51579 4.53116 4.57220 4.69064 4.75357 4.80974 4.86106 4.87086 5.00121 5.05707 5.13419 5.19524 5.25229 5.25736 5.30749 5.37810 5.40449 5.49370 5.53634 5.56681 6.23343 6.40061 7.10534 7.29115 8.01435 8.26269 9.25229 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036355 B = 0.003442 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.996109 B = 8133.623304 C = 8345.061927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.168 3.832 11 H 0.029 0.971 12 C -0.128 4.128 13 C -0.124 4.124 14 C 0.105 3.895 15 N -0.599 5.599 16 C 0.532 3.468 17 O -0.595 6.595 18 C -0.161 4.161 19 H 0.151 0.849 20 C -0.127 4.127 21 H 0.098 0.902 22 C -0.089 4.089 23 C -0.118 4.118 24 C -0.092 4.092 25 C -0.146 4.146 26 H 0.090 0.910 27 C 0.118 3.882 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.038 -25.973 2.850 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.059 3.941 11 H 0.048 0.952 12 C -0.168 4.168 13 C -0.163 4.163 14 C -0.016 4.016 15 N -0.331 5.331 16 C 0.322 3.678 17 O -0.477 6.477 18 C -0.182 4.182 19 H 0.168 0.832 20 C -0.146 4.146 21 H 0.116 0.884 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.130 4.130 25 C -0.165 4.165 26 H 0.108 0.892 27 C -0.006 4.006 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.971 -25.661 2.288 27.280 hybrid contribution -0.533 1.929 -0.389 2.039 sum 8.438 -23.732 1.899 25.259 Atomic orbital electron populations 1.69809 1.06626 1.26262 1.59233 1.25579 0.96413 1.01124 1.03496 0.85202 0.77229 0.79060 0.78212 1.20696 1.21989 1.19988 1.19520 0.91287 0.85068 1.41576 0.90894 1.42486 1.05445 1.00761 1.88921 1.20623 0.93514 0.84741 0.95266 0.95246 1.22075 1.00034 0.97426 0.97282 1.21984 0.97957 0.93540 1.02775 1.22217 0.99359 0.98483 0.81527 1.48120 1.56849 1.18817 1.09291 1.20429 0.78485 0.85918 0.82932 1.90665 1.53772 1.75030 1.28190 1.22381 1.03642 0.88224 1.03904 0.83162 1.23357 0.96737 0.92369 1.02135 0.88352 1.22040 0.99577 0.92412 0.98579 1.23057 0.98300 0.96580 0.97573 1.22424 0.95511 0.92804 1.02228 1.23331 1.00566 0.99827 0.92773 0.89183 1.21582 0.95237 0.82853 1.00947 0.93901 0.79502 0.93465 0.92469 0.91976 0.87711 0.89774 0.86279 0.89393 0.89742 0.89177 0.91277 0.90452 0.90101 0.92406 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.90 9.93 84.03 0.83 -13.06 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -38.64 5.12 -322.59 -1.65 -40.30 16 10 C 0.17 7.00 2.92 45.07 0.13 7.13 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 C -0.13 -4.30 5.47 30.62 0.17 -4.14 16 13 C -0.12 -2.78 6.10 30.82 0.19 -2.60 16 14 C 0.11 2.11 6.37 86.51 0.55 2.66 16 15 N -0.60 -17.94 2.97 -818.08 -2.43 -20.37 16 16 C 0.53 16.88 7.48 87.66 0.66 17.54 16 17 O -0.60 -24.94 15.74 -3.02 -0.05 -24.98 16 18 C -0.16 -3.39 4.65 -11.54 -0.05 -3.44 16 19 H 0.15 2.22 6.58 -2.38 -0.02 2.21 16 20 C -0.13 -2.26 6.64 -10.05 -0.07 -2.33 16 21 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 22 C -0.09 -0.92 6.63 31.67 0.21 -0.71 16 23 C -0.12 -1.12 6.96 32.66 0.23 -0.90 16 24 C -0.09 -1.22 6.79 32.44 0.22 -1.00 16 25 C -0.15 -3.00 6.34 -10.06 -0.06 -3.07 16 26 H 0.09 2.40 7.78 -2.39 -0.02 2.38 16 27 C 0.12 4.49 5.90 86.36 0.51 5.00 16 28 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.37 20.92 7.80 -92.71 -0.72 20.20 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.12 1.55 5.52 -2.39 -0.01 1.54 16 36 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.06 2.59 7.01 -2.39 -0.02 2.57 16 43 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -74.00 340.19 2.43 -71.57 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.27 Total: 28.01 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 3.98 Total: -2.76 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -3.80 Total: -120.91 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.98 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -74.00 2.43 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998839996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.942 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds