Wall clock time and date at job start Tue Mar 31 2020 00:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99864 * 2 1 4 4 H 1.48503 * 109.46878 * 269.99667 * 3 2 1 5 5 H 1.48496 * 109.46935 * 29.99581 * 3 2 1 6 6 H 1.48494 * 109.47058 * 149.99586 * 3 2 1 7 7 C 1.38813 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99795 * 0.02562 * 7 2 1 9 9 N 1.36928 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49246 * 324.93620 * 10 9 7 12 12 C 1.53038 * 109.49883 * 84.99582 * 10 9 7 13 13 C 1.53041 * 109.52750 * 181.35488 * 12 10 9 14 14 C 1.53186 * 109.31328 * 298.62041 * 13 12 10 15 15 N 1.46930 * 108.77028 * 54.65389 * 14 13 12 16 16 C 1.34769 * 120.63384 * 126.35822 * 15 14 13 17 17 O 1.21281 * 120.00103 * 174.77511 * 16 15 14 18 18 C 1.50702 * 120.00057 * 354.77870 * 16 15 14 19 19 C 1.53009 * 119.29924 * 293.93638 * 18 16 15 20 20 C 1.53006 * 60.37693 * 248.69280 * 19 18 16 21 21 H 1.08993 * 119.30169 * 111.30517 * 20 19 18 22 22 C 1.54261 * 118.19681 * 266.38135 * 20 19 18 23 23 C 1.54888 * 104.19754 * 87.79021 * 22 20 19 24 24 C 1.54266 * 117.41418 * 88.27479 * 18 16 15 25 25 C 1.46929 * 118.73512 * 306.38645 * 15 14 13 26 26 H 0.96994 * 120.00031 * 0.02562 * 1 2 3 27 27 H 0.97006 * 120.00413 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.46422 * 301.37420 * 12 10 9 29 29 H 1.09008 * 109.45872 * 61.34610 * 12 10 9 30 30 H 1.09006 * 109.49364 * 58.58322 * 13 12 10 31 31 H 1.08993 * 109.49778 * 178.67789 * 13 12 10 32 32 H 1.09001 * 109.59927 * 294.85958 * 14 13 12 33 33 H 1.08999 * 109.58540 * 174.43362 * 14 13 12 34 34 H 1.08996 * 117.45306 * 356.28769 * 19 18 16 35 35 H 1.08992 * 117.46107 * 141.11360 * 19 18 16 36 36 H 1.08994 * 110.48987 * 206.46729 * 22 20 19 37 37 H 1.09003 * 110.49250 * 328.98167 * 22 20 19 38 38 H 1.09002 * 110.75725 * 80.37195 * 23 22 20 39 39 H 1.09000 * 110.76324 * 203.55664 * 23 22 20 40 40 H 1.08995 * 110.48776 * 235.04964 * 24 18 16 41 41 H 1.09006 * 110.48529 * 357.69538 * 24 18 16 42 42 H 1.09005 * 109.58456 * 293.81531 * 25 15 14 43 43 H 1.09001 * 109.58443 * 173.39466 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5655 -3.2065 0.5910 12 6 4.2592 -2.9758 -1.4361 13 6 4.9948 -4.3178 -1.4340 14 6 6.3952 -4.1270 -0.8432 15 7 6.2685 -3.5067 0.4827 16 6 6.8433 -4.0714 1.5629 17 8 6.8126 -3.5023 2.6334 18 6 7.5244 -5.4102 1.4406 19 6 6.6869 -6.6500 1.1203 20 6 7.3290 -6.5073 2.5018 21 1 6.6925 -6.3471 3.3719 22 6 8.7128 -7.1490 2.7322 23 6 9.7170 -6.0540 2.2946 24 6 9.0151 -5.4150 1.0434 25 6 5.5025 -2.2592 0.6086 26 1 -0.4850 0.8400 -0.0004 27 1 3.8647 -0.3620 0.0007 28 1 3.2715 -3.1037 -1.8790 29 1 4.8276 -2.2511 -2.0193 30 1 4.4398 -5.0359 -0.8304 31 1 5.0786 -4.6883 -2.4556 32 1 6.9820 -3.4797 -1.4949 33 1 6.8866 -5.0953 -0.7480 34 1 5.6065 -6.5228 1.0528 35 1 7.1168 -7.3850 0.4400 36 1 8.8495 -7.3930 3.7856 37 1 8.8266 -8.0416 2.1170 38 1 9.8500 -5.3142 3.0839 39 1 10.6737 -6.4960 2.0163 40 1 9.1729 -6.0364 0.1619 41 1 9.3650 -4.3986 0.8625 42 1 6.0165 -1.4594 0.0752 43 1 5.4049 -1.9950 1.6616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999744574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:39 Heat of formation + Delta-G solvation = 0.230115 kcal Electronic energy + Delta-G solvation = -22449.915141 eV Core-core repulsion = 19302.713962 eV Total energy + Delta-G solvation = -3147.201180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77444 -38.72692 -37.11301 -34.60849 -32.24247 -31.80352 -31.37148 -29.30340 -28.33869 -25.49294 -23.86559 -23.06152 -22.08011 -21.56733 -20.64278 -19.76143 -18.39264 -17.63883 -16.96130 -16.11465 -15.49946 -14.98468 -14.61437 -14.50224 -14.02218 -13.82738 -13.64266 -13.42540 -13.27153 -13.21119 -12.74632 -12.68162 -12.44400 -11.93591 -11.45308 -11.40753 -11.25263 -11.19408 -11.07584 -11.00698 -10.69981 -10.58040 -10.50297 -10.39081 -10.09692 -9.89817 -9.61624 -9.47400 -8.94677 -8.44966 -7.30596 -5.78602 -3.15189 2.67098 2.99697 3.33000 3.37583 3.40843 3.45594 4.18203 4.41037 4.44677 4.58089 4.59443 4.88680 4.96946 5.09464 5.13120 5.17202 5.25848 5.29232 5.38156 5.40935 5.48453 5.49817 5.53518 5.57820 5.61404 5.71160 5.74470 5.79454 5.83166 5.94408 5.97495 6.04123 6.11404 6.12415 6.31079 6.45335 6.63279 6.79254 6.93923 7.54831 7.96149 8.30082 8.39882 9.17422 9.89905 10.08893 11.39522 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.004092 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.059403 B = 6841.651644 C = 7053.021699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.057 0.943 12 C -0.137 4.137 13 C -0.133 4.133 14 C 0.109 3.891 15 N -0.600 5.600 16 C 0.554 3.446 17 O -0.539 6.539 18 C -0.170 4.170 19 C -0.136 4.136 20 C -0.131 4.131 21 H 0.115 0.885 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.077 4.077 25 C 0.103 3.897 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.888 -15.311 -1.148 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.014 4.014 15 N -0.333 5.333 16 C 0.342 3.658 17 O -0.416 6.416 18 C -0.173 4.173 19 C -0.173 4.173 20 C -0.149 4.149 21 H 0.133 0.867 22 C -0.132 4.132 23 C -0.159 4.159 24 C -0.115 4.115 25 C -0.020 4.020 26 H 0.070 0.930 27 H 0.194 0.806 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 19.608 -15.029 -0.548 24.711 hybrid contribution 0.345 1.372 -0.174 1.426 sum 19.954 -13.656 -0.722 24.190 Atomic orbital electron populations 1.69698 1.05110 1.25893 1.57339 1.24662 0.95224 0.97210 1.01853 0.86558 0.79327 0.84972 0.77762 1.21051 1.21668 1.20236 1.19030 0.80290 0.94749 1.43275 0.89181 1.42676 1.04094 1.01725 1.90297 1.20445 0.89982 0.89617 0.93646 0.92449 1.22242 1.00630 0.94853 1.00058 1.21928 0.95398 0.99235 1.00600 1.21784 0.97937 0.98351 0.83346 1.48018 1.51875 1.25498 1.07877 1.19390 0.77883 0.85195 0.83374 1.90691 1.59376 1.63793 1.27702 1.22266 0.97045 0.89336 1.08636 1.23235 0.99321 0.96897 0.97858 1.23386 0.98984 0.99141 0.93419 0.86694 1.21947 0.91896 0.97614 1.01714 1.23035 0.97843 0.97668 0.97336 1.22221 0.89784 1.01480 0.98022 1.22006 0.92112 0.84641 1.03219 0.93004 0.80586 0.91080 0.92585 0.91739 0.91226 0.91647 0.89685 0.87840 0.88086 0.90929 0.91126 0.90957 0.91181 0.90655 0.90942 0.91921 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.22 27.74 -169.99 -4.71 17.50 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.86 10.41 -15.06 -0.16 -7.02 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.66 4.93 -53.31 -0.26 -17.92 16 10 C 0.17 3.35 2.92 -67.81 -0.20 3.16 16 11 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 12 C -0.14 -2.26 5.47 -26.69 -0.15 -2.40 16 13 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 14 C 0.11 1.22 6.25 -3.71 -0.02 1.20 16 15 N -0.60 -8.77 2.97 -172.77 -0.51 -9.28 16 16 C 0.55 8.54 7.08 -10.99 -0.08 8.46 16 17 O -0.54 -10.55 16.51 5.56 0.09 -10.46 16 18 C -0.17 -1.89 1.09 -154.54 -0.17 -2.06 16 19 C -0.14 -1.25 8.59 -26.72 -0.23 -1.47 16 20 C -0.13 -1.34 6.79 -89.50 -0.61 -1.94 16 21 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 22 C -0.09 -0.74 6.63 -25.08 -0.17 -0.91 16 23 C -0.12 -0.98 6.96 -23.54 -0.16 -1.15 16 24 C -0.08 -0.69 6.53 -23.87 -0.16 -0.84 16 25 C 0.10 1.79 5.89 -3.71 -0.02 1.77 16 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 27 H 0.36 8.42 5.66 -40.82 -0.23 8.19 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.78 5.37 -51.93 -0.28 0.50 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.80 7.04 -51.93 -0.37 1.44 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -33.14 337.53 -9.13 -42.27 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.22 Total: 6.30 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.37 Total: -4.91 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.00 Total: -55.79 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.14 -9.13 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999744574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.497 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds