Wall clock time and date at job start Tue Mar 31 2020 00:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99864 * 2 1 4 4 H 1.48503 * 109.46878 * 269.99667 * 3 2 1 5 5 H 1.48496 * 109.46935 * 29.99581 * 3 2 1 6 6 H 1.48494 * 109.47058 * 149.99586 * 3 2 1 7 7 C 1.38813 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99795 * 0.02562 * 7 2 1 9 9 N 1.36928 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00117 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49246 * 324.93620 * 10 9 7 12 12 C 1.53038 * 109.49883 * 84.99582 * 10 9 7 13 13 C 1.53041 * 109.52750 * 181.35488 * 12 10 9 14 14 C 1.53186 * 109.31328 * 298.62041 * 13 12 10 15 15 N 1.46930 * 108.77028 * 54.65389 * 14 13 12 16 16 C 1.34769 * 120.63384 * 126.35822 * 15 14 13 17 17 O 1.21281 * 120.00103 * 174.77511 * 16 15 14 18 18 C 1.50702 * 120.00057 * 354.77870 * 16 15 14 19 19 C 1.53009 * 119.29924 * 293.93638 * 18 16 15 20 20 C 1.53006 * 60.37693 * 248.69280 * 19 18 16 21 21 H 1.08993 * 119.30169 * 111.30517 * 20 19 18 22 22 C 1.54261 * 118.19681 * 266.38135 * 20 19 18 23 23 C 1.54888 * 104.19754 * 87.79021 * 22 20 19 24 24 C 1.54266 * 117.41418 * 88.27479 * 18 16 15 25 25 C 1.46929 * 118.73512 * 306.38645 * 15 14 13 26 26 H 0.96994 * 120.00031 * 0.02562 * 1 2 3 27 27 H 0.97006 * 120.00413 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.46422 * 301.37420 * 12 10 9 29 29 H 1.09008 * 109.45872 * 61.34610 * 12 10 9 30 30 H 1.09006 * 109.49364 * 58.58322 * 13 12 10 31 31 H 1.08993 * 109.49778 * 178.67789 * 13 12 10 32 32 H 1.09001 * 109.59927 * 294.85958 * 14 13 12 33 33 H 1.08999 * 109.58540 * 174.43362 * 14 13 12 34 34 H 1.08996 * 117.45306 * 356.28769 * 19 18 16 35 35 H 1.08992 * 117.46107 * 141.11360 * 19 18 16 36 36 H 1.08994 * 110.48987 * 206.46729 * 22 20 19 37 37 H 1.09003 * 110.49250 * 328.98167 * 22 20 19 38 38 H 1.09002 * 110.75725 * 80.37195 * 23 22 20 39 39 H 1.09000 * 110.76324 * 203.55664 * 23 22 20 40 40 H 1.08995 * 110.48776 * 235.04964 * 24 18 16 41 41 H 1.09006 * 110.48529 * 357.69538 * 24 18 16 42 42 H 1.09005 * 109.58456 * 293.81531 * 25 15 14 43 43 H 1.09001 * 109.58443 * 173.39466 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5655 -3.2065 0.5910 12 6 4.2592 -2.9758 -1.4361 13 6 4.9948 -4.3178 -1.4340 14 6 6.3952 -4.1270 -0.8432 15 7 6.2685 -3.5067 0.4827 16 6 6.8433 -4.0714 1.5629 17 8 6.8126 -3.5023 2.6334 18 6 7.5244 -5.4102 1.4406 19 6 6.6869 -6.6500 1.1203 20 6 7.3290 -6.5073 2.5018 21 1 6.6925 -6.3471 3.3719 22 6 8.7128 -7.1490 2.7322 23 6 9.7170 -6.0540 2.2946 24 6 9.0151 -5.4150 1.0434 25 6 5.5025 -2.2592 0.6086 26 1 -0.4850 0.8400 -0.0004 27 1 3.8647 -0.3620 0.0007 28 1 3.2715 -3.1037 -1.8790 29 1 4.8276 -2.2511 -2.0193 30 1 4.4398 -5.0359 -0.8304 31 1 5.0786 -4.6883 -2.4556 32 1 6.9820 -3.4797 -1.4949 33 1 6.8866 -5.0953 -0.7480 34 1 5.6065 -6.5228 1.0528 35 1 7.1168 -7.3850 0.4400 36 1 8.8495 -7.3930 3.7856 37 1 8.8266 -8.0416 2.1170 38 1 9.8500 -5.3142 3.0839 39 1 10.6737 -6.4960 2.0163 40 1 9.1729 -6.0364 0.1619 41 1 9.3650 -4.3986 0.8625 42 1 6.0165 -1.4594 0.0752 43 1 5.4049 -1.9950 1.6616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999744574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:37 Heat of formation + Delta-G solvation = -21.093251 kcal Electronic energy + Delta-G solvation = -22450.839792 eV Core-core repulsion = 19302.713962 eV Total energy + Delta-G solvation = -3148.125830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.79715 -39.78846 -38.45032 -36.33293 -33.95217 -32.95185 -32.51811 -30.77375 -29.28547 -26.67561 -25.67440 -23.91885 -23.36921 -22.76035 -21.46668 -21.08932 -19.77409 -19.33528 -17.99394 -17.32095 -16.75092 -16.46503 -15.92950 -15.71718 -15.33313 -15.27323 -14.97328 -14.68450 -14.27623 -14.09033 -14.04857 -13.97064 -13.81733 -13.12249 -12.98608 -12.77811 -12.53818 -12.20545 -12.06888 -12.03929 -11.92482 -11.86206 -11.84121 -11.80370 -11.68613 -11.37655 -10.98539 -10.67248 -10.56484 -9.74666 -9.35481 -8.06566 -5.41452 1.35251 1.38692 1.45484 1.49515 1.87748 2.44833 2.52173 3.24430 3.41638 3.51533 3.56553 3.67872 3.83997 3.94721 4.02753 4.10430 4.20329 4.23111 4.29817 4.44420 4.49216 4.56035 4.64891 4.71049 4.75300 4.78006 4.83678 4.86904 4.98417 4.99193 5.04213 5.14539 5.17363 5.20341 5.29566 5.37022 5.45228 5.48523 5.50507 5.72274 6.16609 6.39923 7.01331 7.10788 7.75806 7.95870 9.14843 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.004092 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.059403 B = 6841.651644 C = 7053.021699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.256 1.256 7 C -0.231 4.231 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.171 3.829 11 H 0.029 0.971 12 C -0.129 4.129 13 C -0.124 4.124 14 C 0.108 3.892 15 N -0.598 5.598 16 C 0.545 3.455 17 O -0.594 6.594 18 C -0.180 4.180 19 C -0.114 4.114 20 C -0.144 4.144 21 H 0.087 0.913 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.072 4.072 25 C 0.113 3.887 26 H 0.259 0.741 27 H 0.366 0.634 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.139 0.861 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.344 -16.899 -3.149 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.181 1.181 7 C -0.362 4.362 8 H 0.072 0.928 9 N -0.394 5.394 10 C 0.062 3.938 11 H 0.047 0.953 12 C -0.169 4.169 13 C -0.162 4.162 14 C -0.013 4.013 15 N -0.330 5.330 16 C 0.335 3.665 17 O -0.475 6.475 18 C -0.184 4.184 19 C -0.151 4.151 20 C -0.163 4.163 21 H 0.106 0.894 22 C -0.124 4.124 23 C -0.159 4.159 24 C -0.110 4.110 25 C -0.011 4.011 26 H 0.068 0.932 27 H 0.199 0.801 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.156 0.844 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.119 -16.671 -2.584 28.620 hybrid contribution -0.791 1.777 0.508 2.010 sum 22.328 -14.894 -2.077 26.921 Atomic orbital electron populations 1.69878 1.07112 1.26785 1.59498 1.25488 0.96110 1.01222 1.02423 0.85411 0.78474 0.79570 0.78345 1.19767 1.22233 1.18119 1.18942 0.82267 0.93407 1.41585 0.92757 1.42656 1.02619 1.03597 1.90485 1.20596 0.90313 0.87230 0.95632 0.95305 1.22064 1.00171 0.97731 0.96974 1.21893 0.95264 0.96258 1.02814 1.22081 0.97644 1.00178 0.81440 1.48131 1.50866 1.24551 1.09447 1.20274 0.77293 0.86436 0.82499 1.90659 1.61484 1.65528 1.29792 1.22294 0.98500 0.87161 1.10399 1.23344 0.98567 0.95787 0.97388 1.23521 1.00302 0.99315 0.93173 0.89435 1.21965 0.89850 0.98190 1.02417 1.23046 0.99103 0.97243 0.96468 1.22298 0.87483 1.01694 0.99476 1.21641 0.91445 0.86760 1.01221 0.93225 0.80075 0.93748 0.91486 0.92287 0.87681 0.89574 0.86541 0.89095 0.84353 0.90938 0.88500 0.93290 0.88556 0.87305 0.92060 0.90396 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.97 13.97 21.65 0.30 -63.66 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 3 Si 0.96 46.39 27.74 68.60 1.90 48.29 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.26 -11.46 6.52 99.48 0.65 -10.81 16 7 C -0.23 -13.50 10.41 84.04 0.87 -12.62 16 8 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 9 N -0.75 -36.09 4.93 -322.57 -1.59 -37.68 16 10 C 0.17 6.74 2.92 45.07 0.13 6.87 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.13 -4.12 5.47 30.62 0.17 -3.95 16 13 C -0.12 -2.66 6.08 30.67 0.19 -2.47 16 14 C 0.11 2.03 6.25 86.36 0.54 2.57 16 15 N -0.60 -16.81 2.97 -818.91 -2.43 -19.25 16 16 C 0.55 16.68 7.08 87.66 0.62 17.30 16 17 O -0.59 -24.29 16.51 -3.03 -0.05 -24.34 16 18 C -0.18 -3.64 1.09 -52.20 -0.06 -3.70 16 19 C -0.11 -1.72 8.59 30.60 0.26 -1.46 16 20 C -0.14 -2.75 6.79 -10.07 -0.07 -2.82 16 21 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 22 C -0.09 -1.12 6.63 31.67 0.21 -0.91 16 23 C -0.12 -1.62 6.96 32.66 0.23 -1.39 16 24 C -0.07 -1.02 6.53 32.45 0.21 -0.81 16 25 C 0.11 3.94 5.89 86.36 0.51 4.45 16 26 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 27 H 0.37 16.84 5.66 -92.70 -0.52 16.31 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.12 1.53 5.37 -2.39 -0.01 1.52 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.02 8.00 -2.38 -0.02 1.00 16 42 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.06 2.49 7.04 -2.39 -0.02 2.48 16 Total: -1.00 -77.60 337.53 2.82 -74.78 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.40 Total: 23.97 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.28 Total: -2.12 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -3.72 Total: -120.58 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.90 Total: 48.29 kcal Total: -77.60 2.82 -74.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999744574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.689 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds