Wall clock time and date at job start Tue Mar 31 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48501 * 109.47443 * 240.00207 * 3 2 1 5 5 H 1.48505 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47357 * 119.99906 * 3 2 1 7 7 C 1.38813 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99965 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.49685 * 34.93420 * 10 9 7 12 12 C 1.53041 * 109.49585 * 274.83604 * 10 9 7 13 13 C 1.53041 * 109.53794 * 178.68559 * 12 10 9 14 14 C 1.52760 * 109.38153 * 61.23876 * 13 12 10 15 15 N 1.46922 * 109.01054 * 305.58932 * 14 13 12 16 16 C 1.34777 * 120.63255 * 233.58517 * 15 14 13 17 17 O 1.21283 * 119.99519 * 4.44770 * 16 15 14 18 18 C 1.50702 * 120.00350 * 184.17140 * 16 15 14 19 19 C 1.52998 * 119.29711 * 293.41286 * 18 16 15 20 20 C 1.52996 * 60.37591 * 248.68983 * 19 18 16 21 21 H 1.09005 * 119.29751 * 111.31230 * 20 19 18 22 22 C 1.54267 * 118.20190 * 266.38505 * 20 19 18 23 23 C 1.54882 * 104.19723 * 87.78933 * 22 20 19 24 24 C 1.54266 * 117.41095 * 87.75306 * 18 16 15 25 25 C 1.46928 * 118.73748 * 53.30946 * 15 14 13 26 26 H 0.96997 * 119.99361 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99655 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.45735 * 298.70752 * 12 10 9 29 29 H 1.08999 * 109.46263 * 58.66076 * 12 10 9 30 30 H 1.08997 * 109.49890 * 181.31468 * 13 12 10 31 31 H 1.09000 * 109.49373 * 301.38098 * 13 12 10 32 32 H 1.09000 * 109.50895 * 185.70740 * 14 13 12 33 33 H 1.09002 * 109.43353 * 65.42700 * 14 13 12 34 34 H 1.08999 * 117.46452 * 356.29232 * 19 18 16 35 35 H 1.09003 * 117.45748 * 141.11656 * 19 18 16 36 36 H 1.09003 * 110.48540 * 206.47404 * 22 20 19 37 37 H 1.09001 * 110.48360 * 329.10653 * 22 20 19 38 38 H 1.09002 * 110.75698 * 80.37409 * 23 22 20 39 39 H 1.09001 * 110.75874 * 203.74032 * 23 22 20 40 40 H 1.08999 * 110.49052 * 235.04986 * 24 18 16 41 41 H 1.09005 * 110.48225 * 357.69239 * 24 18 16 42 42 H 1.09000 * 109.58811 * 66.43322 * 25 15 14 43 43 H 1.09009 * 109.58342 * 186.85799 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0580 -3.6569 -0.0016 11 1 2.9689 -3.5510 0.5875 12 6 2.4198 -4.0377 -1.4390 13 6 3.2135 -5.3463 -1.4374 14 6 2.3533 -6.4602 -0.8436 15 7 1.8763 -6.0418 0.4815 16 6 2.0788 -6.8215 1.5620 17 8 2.7292 -7.8402 1.4613 18 6 1.5024 -6.4244 2.8966 19 6 2.0300 -5.1705 3.5968 20 6 2.3235 -6.5491 4.1919 21 1 3.3454 -6.9283 4.1809 22 6 1.3655 -7.0968 5.2699 23 6 0.2608 -7.8229 4.4629 24 6 0.0662 -6.8880 3.2162 25 6 1.1797 -4.7543 0.6075 26 1 -0.4849 0.8401 0.0004 27 1 0.3555 -2.3881 -0.0016 28 1 1.5073 -4.1671 -2.0210 29 1 3.0243 -3.2469 -1.8831 30 1 3.4909 -5.6047 -2.4593 31 1 4.1141 -5.2247 -0.8356 32 1 2.9487 -7.3681 -0.7477 33 1 1.5007 -6.6473 -1.4965 34 1 2.8568 -4.6408 3.1237 35 1 1.3061 -4.5429 4.1166 36 1 1.8859 -7.7988 5.9216 37 1 0.9386 -6.2797 5.8515 38 1 0.5950 -8.8139 4.1556 39 1 -0.6610 -7.8871 5.0411 40 1 -0.5610 -6.0354 3.4763 41 1 -0.3568 -7.4300 2.3703 42 1 0.2295 -4.7993 0.0753 43 1 1.0012 -4.5369 1.6607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999744575.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:41 Heat of formation + Delta-G solvation = -4.459351 kcal Electronic energy + Delta-G solvation = -22640.885035 eV Core-core repulsion = 19493.480505 eV Total energy + Delta-G solvation = -3147.404530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.65152 -38.59165 -37.06320 -34.29683 -32.48243 -31.65451 -31.19545 -28.60057 -28.20358 -25.43775 -23.81200 -23.06371 -22.38835 -21.22101 -20.40877 -19.69365 -18.31879 -17.24719 -16.72270 -16.03377 -15.36053 -14.94206 -14.61160 -14.35017 -13.95606 -13.67754 -13.51215 -13.30917 -13.15116 -13.01578 -12.81864 -12.55180 -12.20231 -11.81371 -11.25888 -11.14618 -11.07920 -11.02362 -10.94522 -10.89888 -10.68187 -10.44209 -10.42333 -10.30825 -10.12650 -9.73117 -9.71317 -9.37160 -8.94029 -8.37916 -7.03972 -5.82748 -3.12390 2.73892 3.09979 3.40489 3.45600 3.45952 3.53471 4.37008 4.51137 4.60408 4.63294 4.77123 5.08140 5.19684 5.25642 5.29354 5.33388 5.35653 5.46889 5.51946 5.55119 5.60721 5.64068 5.74748 5.78826 5.81030 5.85606 5.89974 5.95314 5.99404 6.07609 6.13193 6.16544 6.27648 6.35447 6.38812 6.44977 6.76028 6.82170 7.01262 7.60738 7.65589 8.33978 8.36595 9.46773 10.01254 10.36614 11.39585 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018336 B = 0.005087 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.709354 B = 5502.872096 C = 6451.874151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.132 4.132 14 C 0.112 3.888 15 N -0.599 5.599 16 C 0.559 3.441 17 O -0.550 6.550 18 C -0.170 4.170 19 C -0.132 4.132 20 C -0.133 4.133 21 H 0.112 0.888 22 C -0.095 4.095 23 C -0.120 4.120 24 C -0.077 4.077 25 C 0.099 3.901 26 H 0.256 0.744 27 H 0.384 0.616 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -13.965 5.820 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.171 4.171 14 C -0.011 4.011 15 N -0.331 5.331 16 C 0.346 3.654 17 O -0.429 6.429 18 C -0.173 4.173 19 C -0.169 4.169 20 C -0.151 4.151 21 H 0.130 0.870 22 C -0.132 4.132 23 C -0.158 4.158 24 C -0.115 4.115 25 C -0.024 4.024 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.478 -14.349 5.763 15.534 hybrid contribution 0.186 1.114 -0.314 1.172 sum 1.664 -13.235 5.449 14.410 Atomic orbital electron populations 1.69645 1.05095 1.25874 1.57384 1.24723 0.95490 0.97638 1.02759 0.86286 0.78561 0.83550 0.77888 1.21264 1.21663 1.21231 1.19150 0.90932 0.83878 1.43147 0.91247 1.42296 1.05738 0.99450 1.88683 1.20472 0.94498 0.85913 0.93377 0.93257 1.22283 0.99643 0.95379 1.00507 1.21847 0.98882 0.95947 1.00433 1.21520 0.98314 0.98316 0.82926 1.48063 1.57058 1.20453 1.07539 1.19401 0.78995 0.82802 0.84154 1.90638 1.40575 1.26294 1.85352 1.22241 0.97489 1.05641 0.91927 1.23266 1.02968 0.89876 1.00821 1.23387 0.99395 0.99716 0.92615 0.86954 1.21949 0.95401 0.99553 0.96291 1.23024 0.98280 0.98969 0.95512 1.22209 0.92077 0.99268 0.97941 1.22209 0.95449 0.81717 1.03008 0.93394 0.78208 0.92490 0.91607 0.91407 0.92037 0.89595 0.91763 0.87740 0.87739 0.91082 0.91012 0.91145 0.91198 0.90359 0.91071 0.91658 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.97 5.12 -53.31 -0.27 -17.24 16 10 C 0.17 3.18 2.92 -67.81 -0.20 2.98 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.38 5.47 -26.69 -0.15 -2.52 16 13 C -0.13 -1.89 6.06 -26.83 -0.16 -2.06 16 14 C 0.11 1.59 6.41 -3.94 -0.03 1.57 16 15 N -0.60 -9.24 2.98 -173.03 -0.52 -9.76 16 16 C 0.56 9.01 7.08 -10.98 -0.08 8.93 16 17 O -0.55 -10.37 16.48 5.55 0.09 -10.28 16 18 C -0.17 -2.28 1.36 -154.55 -0.21 -2.49 16 19 C -0.13 -1.69 8.01 -26.73 -0.21 -1.90 16 20 C -0.13 -1.61 6.78 -89.51 -0.61 -2.22 16 21 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 22 C -0.09 -0.93 6.63 -25.08 -0.17 -1.09 16 23 C -0.12 -1.19 6.96 -23.55 -0.16 -1.35 16 24 C -0.08 -0.88 6.59 -23.88 -0.16 -1.04 16 25 C 0.10 1.60 5.72 -3.71 -0.02 1.58 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.46 4.96 -51.92 -0.26 1.21 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -30.03 339.92 -9.51 -39.54 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.24 Total: 8.73 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -2.40 Total: -6.50 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.06 Total: -53.36 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.03 -9.51 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999744575.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.080 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds