Wall clock time and date at job start Mon Mar 30 2020 23:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00314 * 2 1 4 4 H 1.48502 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47402 * 299.99829 * 3 2 1 6 6 H 1.48502 * 109.47413 * 60.00296 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00207 * 164.51084 * 7 2 1 9 9 N 1.36941 * 120.00141 * 344.51002 * 7 2 1 10 10 C 1.47004 * 121.37218 * 335.97499 * 9 7 2 11 11 C 1.50320 * 109.16460 * 222.96629 * 10 9 7 12 12 C 1.29455 * 123.65158 * 349.01978 * 11 10 9 13 13 C 1.50700 * 117.69589 * 180.85550 * 12 11 10 14 14 N 1.46502 * 109.46776 * 95.00555 * 13 12 11 15 15 C 1.34774 * 120.00009 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00172 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00201 * 179.97438 * 15 14 13 18 18 C 1.54890 * 110.48363 * 63.24178 * 17 15 14 19 19 C 1.55245 * 102.58566 * 156.67719 * 18 17 15 20 20 C 1.54259 * 104.23001 * 322.08659 * 19 18 17 21 21 C 1.53875 * 106.60491 * 23.61018 * 20 19 18 22 22 C 1.49969 * 124.61280 * 1.14538 * 12 11 10 23 23 C 1.47334 * 121.37362 * 155.99413 * 9 7 2 24 24 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.52185 * 103.06158 * 10 9 7 26 26 H 1.08996 * 109.52178 * 342.87311 * 10 9 7 27 27 H 1.07995 * 118.17796 * 169.00204 * 11 10 9 28 28 H 1.08999 * 109.47338 * 335.01188 * 13 12 11 29 29 H 1.08995 * 109.47350 * 215.00083 * 13 12 11 30 30 H 0.97003 * 119.99950 * 0.02562 * 14 13 12 31 31 H 1.09006 * 110.43211 * 300.70500 * 17 15 14 32 32 H 1.08994 * 110.75691 * 275.06570 * 18 17 15 33 33 H 1.09000 * 110.76025 * 38.44259 * 18 17 15 34 34 H 1.09005 * 110.46747 * 203.39278 * 19 18 17 35 35 H 1.09003 * 110.58084 * 80.83114 * 19 18 17 36 36 H 1.09002 * 110.03308 * 264.32129 * 20 19 18 37 37 H 1.09000 * 110.07570 * 142.92145 * 20 19 18 38 38 H 1.09003 * 110.03151 * 240.71965 * 21 20 19 39 39 H 1.08995 * 110.03133 * 119.28230 * 21 20 19 40 40 H 1.09000 * 109.31769 * 101.00006 * 22 12 11 41 41 H 1.08997 * 109.31888 * 220.43738 * 22 12 11 42 42 H 1.09002 * 109.77728 * 237.79210 * 23 9 7 43 43 H 1.09000 * 109.78487 * 358.59774 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2192 -0.2503 9 7 1.3627 -2.3667 0.3157 10 6 0.1443 -2.3659 1.1382 11 6 0.2245 -3.4838 2.1400 12 6 1.1202 -4.4178 2.1025 13 6 1.0638 -5.4853 3.1647 14 7 0.3199 -6.6407 2.6568 15 6 0.1404 -7.7235 3.4389 16 8 0.5952 -7.7416 4.5631 17 6 -0.6252 -8.9118 2.9166 18 6 0.1093 -9.5407 1.7067 19 6 -0.4271 -10.9975 1.7052 20 6 -0.5325 -11.3642 3.1999 21 6 -0.6585 -10.0382 3.9702 22 6 2.2136 -4.5089 1.0802 23 6 1.8588 -3.6721 -0.1541 24 1 -0.4850 0.8401 0.0004 25 1 -0.7266 -2.5113 0.4992 26 1 0.0586 -1.4135 1.6613 27 1 -0.5055 -3.5091 2.9355 28 1 0.5634 -5.0916 4.0494 29 1 2.0766 -5.7917 3.4261 30 1 -0.0435 -6.6264 1.7575 31 1 -1.6379 -8.6196 2.6383 32 1 -0.1578 -9.0272 0.7831 33 1 1.1884 -9.5264 1.8597 34 1 0.2734 -11.6611 1.1980 35 1 -1.4073 -11.0445 1.2308 36 1 0.3637 -11.8970 3.5178 37 1 -1.4142 -11.9815 3.3724 38 1 0.1766 -9.9273 4.6618 39 1 -1.6018 -10.0114 4.5157 40 1 3.1440 -4.1420 1.5137 41 1 2.3434 -5.5495 0.7829 42 1 1.0844 -4.1738 -0.7344 43 1 2.7473 -3.5295 -0.7692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000358800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:22 Heat of formation + Delta-G solvation = -19.760741 kcal Electronic energy + Delta-G solvation = -21588.338673 eV Core-core repulsion = 18440.270625 eV Total energy + Delta-G solvation = -3148.068048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10499 -37.99986 -37.11558 -34.93103 -32.91202 -31.00959 -29.86982 -29.39545 -28.86229 -26.74999 -24.23659 -22.80084 -22.00956 -21.09238 -20.66236 -19.72196 -17.81213 -17.45312 -16.23488 -15.73731 -15.67286 -15.18622 -14.98680 -14.53519 -13.97451 -13.82661 -13.60059 -13.50588 -13.30354 -12.92650 -12.28317 -12.12413 -12.02961 -11.62304 -11.50101 -11.42260 -11.34966 -11.31369 -11.01274 -10.93814 -10.77098 -10.64650 -10.41460 -10.30647 -9.85694 -9.79381 -9.59676 -8.94286 -8.71156 -8.08084 -6.77951 -5.82888 -3.21745 2.59036 2.68237 3.35941 3.43829 3.45820 3.55602 4.26147 4.36086 4.46935 4.56041 4.97977 5.12696 5.14247 5.22722 5.28384 5.32606 5.34770 5.38183 5.41304 5.56316 5.59752 5.68956 5.81074 5.83084 5.92499 5.95355 6.05284 6.06165 6.13804 6.15891 6.30151 6.45422 6.54927 6.70476 6.83769 7.13932 7.22948 7.30033 7.61775 7.70593 7.79758 8.28756 8.34847 9.16375 9.79079 10.36877 11.27600 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.003127 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.374408 B = 8952.010647 C = 9124.883292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.596 5.596 10 C 0.194 3.806 11 C -0.125 4.125 12 C -0.166 4.166 13 C 0.156 3.844 14 N -0.719 5.719 15 C 0.515 3.485 16 O -0.548 6.548 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.112 4.112 22 C -0.090 4.090 23 C 0.144 3.856 24 H 0.254 0.746 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.401 0.599 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.023 0.977 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.304 -19.272 3.327 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.375 4.375 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.146 4.146 12 C -0.167 4.167 13 C 0.034 3.966 14 N -0.370 5.370 15 C 0.302 3.698 16 O -0.426 6.426 17 C -0.137 4.137 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.150 4.150 22 C -0.129 4.129 23 C 0.017 3.983 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.236 0.764 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.049 -19.106 4.136 19.656 hybrid contribution 0.123 0.984 -0.320 1.042 sum -1.926 -18.122 3.817 18.619 Atomic orbital electron populations 1.70016 1.05183 1.25429 1.54851 1.24992 0.95411 0.98329 1.01218 0.86179 0.79262 0.83824 0.77268 1.20297 1.21737 1.21570 1.19230 0.92265 0.84329 1.41673 0.91302 1.44140 1.29233 1.01236 1.57272 1.19756 0.88786 0.94786 0.89757 1.23282 0.95895 0.96685 0.98694 1.20503 0.99938 0.97231 0.99023 1.20451 0.96099 0.84575 0.95500 1.46208 1.56463 1.16224 1.18098 1.20570 0.80096 0.83754 0.85417 1.90669 1.50621 1.81719 1.19582 1.22184 1.00114 0.93837 0.97527 1.22555 1.00261 0.95769 0.96646 1.22408 1.01204 0.95945 0.96526 1.22151 1.01786 0.97312 0.95018 1.22062 1.03353 0.92205 0.97351 1.20786 0.96570 0.99003 0.96523 1.20990 0.97324 0.87184 0.92756 0.93643 0.94117 0.88887 0.88817 0.91778 0.91715 0.76441 0.88244 0.90665 0.90911 0.91433 0.91359 0.91761 0.91794 0.89862 0.91596 0.91738 0.92920 0.95875 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.91 11.08 55.49 0.61 -25.30 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 3 Si 0.90 21.56 29.58 -169.99 -5.03 16.54 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.66 9.71 -15.06 -0.15 -6.80 16 8 H 0.07 1.84 7.88 -52.48 -0.41 1.42 16 9 N -0.60 -14.66 3.01 -173.56 -0.52 -15.18 16 10 C 0.19 4.52 5.23 -5.10 -0.03 4.49 16 11 C -0.12 -2.34 9.47 -35.78 -0.34 -2.68 16 12 C -0.17 -2.81 5.22 -100.99 -0.53 -3.34 16 13 C 0.16 2.35 5.66 -5.19 -0.03 2.33 16 14 N -0.72 -9.28 5.51 -61.47 -0.34 -9.62 16 15 C 0.52 6.90 7.14 -10.99 -0.08 6.82 16 16 O -0.55 -9.41 15.44 5.55 0.09 -9.33 16 17 C -0.12 -1.13 3.24 -90.11 -0.29 -1.42 16 18 C -0.11 -0.95 6.32 -24.55 -0.16 -1.10 16 19 C -0.12 -0.87 6.84 -24.88 -0.17 -1.04 16 20 C -0.13 -0.96 6.80 -25.62 -0.17 -1.13 16 21 C -0.11 -1.08 6.17 -25.61 -0.16 -1.24 16 22 C -0.09 -1.53 5.95 -28.08 -0.17 -1.70 16 23 C 0.14 2.90 6.59 -3.43 -0.02 2.88 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 27 H 0.09 1.59 7.73 -52.49 -0.41 1.19 16 28 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 29 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.40 4.51 8.46 -40.82 -0.35 4.16 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.99 6.88 -51.93 -0.36 0.63 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -30.50 342.42 -9.70 -40.20 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.30 Total: 1.62 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.37 Total: -4.09 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.25 Total: -50.10 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.50 -9.70 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000358800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.437 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds