Wall clock time and date at job start Mon Mar 30 2020 23:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86795 * 120.00314 * 2 1 4 4 H 1.48502 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47402 * 299.99829 * 3 2 1 6 6 H 1.48502 * 109.47413 * 60.00296 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00207 * 164.51084 * 7 2 1 9 9 N 1.36941 * 120.00141 * 344.51002 * 7 2 1 10 10 C 1.47004 * 121.37218 * 335.97499 * 9 7 2 11 11 C 1.50320 * 109.16460 * 222.96629 * 10 9 7 12 12 C 1.29455 * 123.65158 * 349.01978 * 11 10 9 13 13 C 1.50700 * 117.69589 * 180.85550 * 12 11 10 14 14 N 1.46502 * 109.46776 * 95.00555 * 13 12 11 15 15 C 1.34774 * 120.00009 * 180.02562 * 14 13 12 16 16 O 1.21286 * 120.00172 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00201 * 179.97438 * 15 14 13 18 18 C 1.54890 * 110.48363 * 63.24178 * 17 15 14 19 19 C 1.55245 * 102.58566 * 156.67719 * 18 17 15 20 20 C 1.54259 * 104.23001 * 322.08659 * 19 18 17 21 21 C 1.53875 * 106.60491 * 23.61018 * 20 19 18 22 22 C 1.49969 * 124.61280 * 1.14538 * 12 11 10 23 23 C 1.47334 * 121.37362 * 155.99413 * 9 7 2 24 24 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.52185 * 103.06158 * 10 9 7 26 26 H 1.08996 * 109.52178 * 342.87311 * 10 9 7 27 27 H 1.07995 * 118.17796 * 169.00204 * 11 10 9 28 28 H 1.08999 * 109.47338 * 335.01188 * 13 12 11 29 29 H 1.08995 * 109.47350 * 215.00083 * 13 12 11 30 30 H 0.97003 * 119.99950 * 0.02562 * 14 13 12 31 31 H 1.09006 * 110.43211 * 300.70500 * 17 15 14 32 32 H 1.08994 * 110.75691 * 275.06570 * 18 17 15 33 33 H 1.09000 * 110.76025 * 38.44259 * 18 17 15 34 34 H 1.09005 * 110.46747 * 203.39278 * 19 18 17 35 35 H 1.09003 * 110.58084 * 80.83114 * 19 18 17 36 36 H 1.09002 * 110.03308 * 264.32129 * 20 19 18 37 37 H 1.09000 * 110.07570 * 142.92145 * 20 19 18 38 38 H 1.09003 * 110.03151 * 240.71965 * 21 20 19 39 39 H 1.08995 * 110.03133 * 119.28230 * 21 20 19 40 40 H 1.09000 * 109.31769 * 101.00006 * 22 12 11 41 41 H 1.08997 * 109.31888 * 220.43738 * 22 12 11 42 42 H 1.09002 * 109.77728 * 237.79210 * 23 9 7 43 43 H 1.09000 * 109.78487 * 358.59774 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0608 -1.2192 -0.2503 9 7 1.3627 -2.3667 0.3157 10 6 0.1443 -2.3659 1.1382 11 6 0.2245 -3.4838 2.1400 12 6 1.1202 -4.4178 2.1025 13 6 1.0638 -5.4853 3.1647 14 7 0.3199 -6.6407 2.6568 15 6 0.1404 -7.7235 3.4389 16 8 0.5952 -7.7416 4.5631 17 6 -0.6252 -8.9118 2.9166 18 6 0.1093 -9.5407 1.7067 19 6 -0.4271 -10.9975 1.7052 20 6 -0.5325 -11.3642 3.1999 21 6 -0.6585 -10.0382 3.9702 22 6 2.2136 -4.5089 1.0802 23 6 1.8588 -3.6721 -0.1541 24 1 -0.4850 0.8401 0.0004 25 1 -0.7266 -2.5113 0.4992 26 1 0.0586 -1.4135 1.6613 27 1 -0.5055 -3.5091 2.9355 28 1 0.5634 -5.0916 4.0494 29 1 2.0766 -5.7917 3.4261 30 1 -0.0435 -6.6264 1.7575 31 1 -1.6379 -8.6196 2.6383 32 1 -0.1578 -9.0272 0.7831 33 1 1.1884 -9.5264 1.8597 34 1 0.2734 -11.6611 1.1980 35 1 -1.4073 -11.0445 1.2308 36 1 0.3637 -11.8970 3.5178 37 1 -1.4142 -11.9815 3.3724 38 1 0.1766 -9.9273 4.6618 39 1 -1.6018 -10.0114 4.5157 40 1 3.1440 -4.1420 1.5137 41 1 2.3434 -5.5495 0.7829 42 1 1.0844 -4.1738 -0.7344 43 1 2.7473 -3.5295 -0.7692 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000358800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:22 Heat of formation + Delta-G solvation = -37.657079 kcal Electronic energy + Delta-G solvation = -21589.114716 eV Core-core repulsion = 18440.270625 eV Total energy + Delta-G solvation = -3148.844092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13986 -39.46129 -38.02824 -36.39477 -34.54083 -32.68212 -31.45653 -30.38152 -29.52756 -28.29841 -25.87992 -24.41105 -23.17841 -22.55239 -21.33058 -20.64707 -19.50048 -18.58940 -17.41511 -17.19598 -16.91671 -16.61380 -16.04892 -15.85270 -15.41452 -15.30237 -15.14065 -14.54595 -14.29433 -14.25635 -13.91712 -13.60902 -13.27594 -13.00734 -12.83795 -12.78636 -12.61805 -12.26514 -12.16897 -12.06229 -12.02591 -11.95539 -11.71349 -11.67009 -11.30217 -11.25266 -10.85756 -10.69461 -10.09479 -9.65460 -8.75725 -7.89217 -5.30332 1.18031 1.45919 1.48159 1.58008 1.63987 2.44961 2.50614 3.28121 3.54621 3.61695 3.66811 3.83167 3.89091 3.96397 4.26538 4.42492 4.49954 4.53008 4.55308 4.59941 4.63999 4.66533 4.74728 4.82134 4.83529 4.91323 4.99140 5.09862 5.12451 5.20873 5.23500 5.30061 5.35107 5.38842 5.47165 5.47462 5.50611 5.61175 5.76096 6.15612 6.33396 6.57989 7.12960 7.24920 7.82967 8.36457 9.19450 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.003127 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.374408 B = 8952.010647 C = 9124.883292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.206 3.794 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.166 3.834 14 N -0.711 5.711 15 C 0.514 3.486 16 O -0.589 6.589 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.084 4.084 23 C 0.139 3.861 24 H 0.250 0.750 25 H 0.015 0.985 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.413 0.587 31 H 0.120 0.880 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.030 0.970 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.937 -21.233 2.880 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.163 4.163 12 C -0.139 4.139 13 C 0.043 3.957 14 N -0.362 5.362 15 C 0.303 3.697 16 O -0.470 6.470 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.160 4.160 21 C -0.152 4.152 22 C -0.122 4.122 23 C 0.014 3.986 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.249 0.751 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.048 0.952 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.674 -21.102 3.664 21.483 hybrid contribution 0.046 1.517 -0.190 1.530 sum -1.628 -19.585 3.473 19.957 Atomic orbital electron populations 1.70167 1.06472 1.25707 1.56215 1.25731 0.96185 1.01309 1.01703 0.85204 0.78565 0.79962 0.76717 1.19174 1.21862 1.21893 1.19547 0.92556 0.85617 1.40872 0.91206 1.44425 1.29422 1.02219 1.57943 1.19391 0.87747 0.94866 0.89936 1.22945 0.98210 0.96203 0.98955 1.20606 0.98265 0.96523 0.98484 1.20209 0.96466 0.84611 0.94455 1.46065 1.56051 1.15467 1.18617 1.21205 0.79491 0.84334 0.84714 1.90658 1.52394 1.82490 1.21475 1.22252 1.00672 0.92164 0.98090 1.22580 0.99406 0.96677 0.96369 1.22415 1.02116 0.95086 0.96034 1.22146 1.02379 0.96231 0.95267 1.22068 1.02420 0.93486 0.97258 1.20726 0.96160 1.00386 0.94962 1.21182 0.97418 0.85724 0.94296 0.94129 0.96704 0.92585 0.87124 0.92376 0.91636 0.75107 0.86236 0.89101 0.92066 0.90561 0.90026 0.91961 0.90460 0.92555 0.91203 0.91955 0.89317 0.95172 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.05 11.08 21.65 0.24 -54.81 16 2 C -0.05 -3.03 5.01 84.86 0.43 -2.61 16 3 Si 0.97 44.89 29.58 68.60 2.03 46.92 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.26 -13.98 9.71 84.03 0.82 -13.17 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 N -0.62 -30.50 3.01 -703.03 -2.11 -32.61 16 10 C 0.21 9.83 5.23 85.42 0.45 10.27 16 11 C -0.14 -5.28 9.47 27.10 0.26 -5.03 16 12 C -0.14 -4.42 5.22 -15.14 -0.08 -4.50 16 13 C 0.17 4.66 5.66 85.63 0.48 5.14 16 14 N -0.71 -16.64 5.51 -466.79 -2.57 -19.21 16 15 C 0.51 12.90 7.14 87.66 0.63 13.52 16 16 O -0.59 -19.89 15.44 -3.05 -0.05 -19.94 16 17 C -0.11 -1.91 3.24 -10.46 -0.03 -1.95 16 18 C -0.11 -1.53 6.32 32.01 0.20 -1.33 16 19 C -0.12 -1.31 6.84 31.79 0.22 -1.09 16 20 C -0.12 -1.60 6.80 31.32 0.21 -1.38 16 21 C -0.11 -2.05 6.17 31.32 0.19 -1.86 16 22 C -0.08 -2.65 5.95 29.72 0.18 -2.47 16 23 C 0.14 5.42 6.59 86.32 0.57 5.99 16 24 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 25 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 3.06 6.41 -2.39 -0.02 3.04 16 27 H 0.11 3.69 7.73 -2.91 -0.02 3.67 16 28 H 0.06 1.74 7.78 -2.39 -0.02 1.73 16 29 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 30 H 0.41 7.97 8.46 -92.71 -0.78 7.18 16 31 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.99 8.05 -2.39 -0.02 0.97 16 34 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 1.33 6.88 -2.39 -0.02 1.31 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.06 2.26 7.96 -2.39 -0.02 2.24 16 Total: -1.00 -67.14 342.42 2.25 -64.90 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.20 Total: 15.19 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 4.51 Total: -0.43 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.45 Total: -106.63 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.14 2.25 -64.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000358800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.239 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds