Wall clock time and date at job start Tue Mar 31 2020 00:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00254 * 2 1 4 4 H 1.48500 * 109.47328 * 274.90019 * 3 2 1 5 5 H 1.48498 * 109.46869 * 34.90153 * 3 2 1 6 6 H 1.48501 * 109.46788 * 154.89594 * 3 2 1 7 7 C 1.38811 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00420 * 339.72124 * 7 2 1 9 9 N 1.36941 * 120.00245 * 159.72653 * 7 2 1 10 10 C 1.46922 * 120.63274 * 152.77382 * 9 7 2 11 11 C 1.53188 * 108.77502 * 126.41506 * 10 9 7 12 12 C 1.53038 * 109.31120 * 54.63813 * 11 10 9 13 13 C 1.53039 * 109.52674 * 298.63933 * 12 11 10 14 14 H 1.09000 * 109.50097 * 301.40749 * 13 12 11 15 15 N 1.46502 * 109.49989 * 181.31334 * 13 12 11 16 16 C 1.34773 * 120.00216 * 155.00098 * 15 13 12 17 17 O 1.21291 * 119.99768 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00195 * 179.97438 * 16 15 13 19 19 H 1.09004 * 115.52966 * 34.50227 * 18 16 15 20 20 C 1.53001 * 117.46329 * 180.02562 * 18 16 15 21 21 H 1.09002 * 119.29670 * 356.28536 * 20 18 16 22 22 C 1.54273 * 118.19821 * 202.15216 * 20 18 16 23 23 C 1.57043 * 103.17438 * 271.72798 * 22 20 18 24 24 C 1.54889 * 102.88489 * 38.01545 * 23 22 20 25 25 C 1.52999 * 117.46318 * 249.04043 * 18 16 15 26 26 H 1.09007 * 119.29587 * 3.71390 * 25 18 16 27 27 C 1.46929 * 120.62722 * 332.80055 * 9 7 2 28 28 H 0.97002 * 120.00087 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.58681 * 6.62987 * 10 9 7 30 30 H 1.09007 * 109.58962 * 246.20597 * 10 9 7 31 31 H 1.09004 * 109.49963 * 294.68512 * 11 10 9 32 32 H 1.09005 * 109.49987 * 174.58485 * 11 10 9 33 33 H 1.09000 * 109.46502 * 58.65604 * 12 11 10 34 34 H 1.09004 * 109.45873 * 178.62972 * 12 11 10 35 35 H 0.96994 * 119.99747 * 334.99974 * 15 13 12 36 36 H 1.08998 * 110.48530 * 30.88529 * 22 20 18 37 37 H 1.09000 * 110.48165 * 153.52856 * 22 20 18 38 38 H 1.09002 * 110.82029 * 279.59207 * 23 22 20 39 39 H 1.08999 * 110.56542 * 156.31753 * 23 22 20 40 40 H 1.09001 * 110.48230 * 203.23806 * 24 23 22 41 41 H 1.08997 * 110.60444 * 80.64172 * 24 23 22 42 42 H 1.08999 * 109.58916 * 353.37225 * 27 9 7 43 43 H 1.09001 * 109.58670 * 113.65388 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1062 -1.3949 5 1 1.5033 2.6205 0.8011 6 1 3.5957 1.4123 0.5940 7 6 2.0102 -1.2022 -0.0005 8 1 1.5204 -2.1086 0.3232 9 7 3.3159 -1.2389 -0.4115 10 6 4.2334 -2.2658 0.1007 11 6 4.8798 -2.9859 -1.0867 12 6 5.5400 -1.9552 -2.0054 13 6 4.4771 -0.9944 -2.5432 14 1 3.7171 -1.5583 -3.0840 15 7 5.1047 -0.0272 -3.4471 16 6 4.3723 0.5719 -4.4068 17 8 3.1936 0.3100 -4.5225 18 6 5.0177 1.5672 -5.3362 19 1 6.0542 1.3586 -5.6015 20 6 4.1321 2.2128 -6.4039 21 1 3.0941 1.8943 -6.4999 22 6 4.8128 2.8026 -7.6564 23 6 5.1434 4.2757 -7.2240 24 6 5.5636 4.1145 -5.7419 25 6 4.6079 3.0343 -5.1937 26 1 3.9205 3.3212 -4.3979 27 6 3.8262 -0.2516 -1.3726 28 1 -0.4850 0.8401 0.0004 29 1 3.6781 -2.9833 0.7050 30 1 5.0068 -1.7949 0.7077 31 1 4.1160 -3.5312 -1.6413 32 1 5.6336 -3.6840 -0.7224 33 1 6.2864 -1.3935 -1.4438 34 1 6.0217 -2.4671 -2.8385 35 1 6.0473 0.1819 -3.3549 36 1 5.7187 2.2460 -7.8961 37 1 4.1254 2.7970 -8.5023 38 1 4.2620 4.9114 -7.3087 39 1 5.9663 4.6735 -7.8177 40 1 5.4286 5.0523 -5.2030 41 1 6.5985 3.7801 -5.6708 42 1 3.0023 0.3599 -1.7405 43 1 4.5645 0.3851 -0.8852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007041710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:46 Heat of formation + Delta-G solvation = 4.361437 kcal Electronic energy + Delta-G solvation = -22425.366109 eV Core-core repulsion = 19278.344077 eV Total energy + Delta-G solvation = -3147.022032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.33306 -38.73392 -37.28886 -34.24099 -32.68406 -31.80453 -30.67762 -29.21232 -28.41948 -25.27064 -24.47162 -22.63467 -21.66738 -20.77462 -20.06626 -19.76053 -19.36595 -17.35830 -16.80998 -15.93113 -15.53098 -15.13676 -14.79492 -14.37492 -14.08095 -13.72936 -13.55606 -13.35940 -13.18541 -12.87040 -12.74604 -12.31935 -12.19134 -11.63931 -11.58205 -11.44408 -11.30733 -11.07700 -11.06317 -10.74805 -10.59114 -10.22899 -10.18478 -10.14386 -9.93839 -9.73266 -9.50610 -9.36137 -8.83491 -8.47558 -6.93922 -5.89897 -3.26219 2.67226 3.27430 3.40650 3.50189 3.53128 3.71053 4.38024 4.54946 4.58824 4.59398 4.98938 5.03249 5.06875 5.10173 5.20057 5.25425 5.27176 5.28525 5.38328 5.50831 5.51899 5.52768 5.63440 5.81390 5.84394 5.86581 5.93968 5.97719 6.05980 6.15910 6.22103 6.24804 6.27575 6.45825 6.60006 6.65060 6.66978 6.83372 6.96852 7.79160 8.00364 8.37735 8.54417 8.97742 9.76961 10.12797 11.25975 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.005484 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.500823 B = 5104.682275 C = 6014.301583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.091 0.909 15 N -0.722 5.722 16 C 0.536 3.464 17 O -0.527 6.527 18 C -0.161 4.161 19 H 0.118 0.882 20 C -0.133 4.133 21 H 0.122 0.878 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.095 4.095 25 C -0.141 4.141 26 H 0.115 0.885 27 C 0.121 3.879 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.327 4.484 -12.304 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.711 3.289 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.105 0.895 9 N -0.326 5.326 10 C 0.020 3.980 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.109 0.891 15 N -0.373 5.373 16 C 0.321 3.679 17 O -0.403 6.403 18 C -0.182 4.182 19 H 0.136 0.864 20 C -0.152 4.152 21 H 0.140 0.860 22 C -0.133 4.133 23 C -0.160 4.160 24 C -0.132 4.132 25 C -0.160 4.160 26 H 0.133 0.867 27 C -0.006 4.006 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 15.269 4.366 -12.346 20.115 hybrid contribution 0.891 1.039 0.130 1.374 sum 16.160 5.404 -12.216 20.966 Atomic orbital electron populations 1.69829 1.05704 1.26519 1.52683 1.25245 0.95194 0.97544 0.99135 0.86950 0.80019 0.84989 0.76914 1.21585 1.23148 1.19618 1.18904 0.84829 0.94781 1.40683 0.89533 1.44291 1.08679 1.33065 1.46539 1.20982 0.92481 0.91314 0.93259 1.22005 0.99597 0.97343 0.98287 1.21677 0.97412 0.97304 0.98999 1.21755 0.95333 0.89855 0.91075 0.89113 1.46043 1.13109 1.44699 1.33412 1.19592 0.86660 0.81057 0.80589 1.90768 1.15541 1.62744 1.71236 1.22379 1.00396 0.94020 1.01427 0.86427 1.23247 1.00053 1.01848 0.90028 0.85997 1.22378 1.00061 0.94985 0.95888 1.23058 1.01119 0.96537 0.95305 1.21980 0.98232 0.97561 0.95451 1.23272 1.02213 0.89072 1.01434 0.86694 1.21674 0.97604 0.92316 0.88979 0.92776 0.91634 0.95919 0.91642 0.92139 0.92123 0.92468 0.77218 0.91184 0.90844 0.91058 0.91346 0.90885 0.91223 0.90488 0.95797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.04 13.97 55.49 0.78 -28.27 16 2 C 0.03 0.86 5.24 -17.43 -0.09 0.77 16 3 Si 0.88 23.76 24.34 -169.99 -4.14 19.62 16 4 H -0.29 -7.83 6.70 56.52 0.38 -7.45 16 5 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 6 H -0.27 -7.05 6.45 56.52 0.36 -6.69 16 7 C -0.26 -7.70 10.04 -15.06 -0.15 -7.85 16 8 H 0.09 2.66 8.05 -52.49 -0.42 2.23 16 9 N -0.60 -14.87 2.77 -172.34 -0.48 -15.34 16 10 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 11 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 12 C -0.12 -1.74 5.36 -26.69 -0.14 -1.88 16 13 C 0.13 2.36 2.60 -67.83 -0.18 2.19 16 14 H 0.09 1.99 7.58 -51.93 -0.39 1.59 16 15 N -0.72 -11.41 5.08 -53.70 -0.27 -11.69 16 16 C 0.54 9.37 7.58 -10.99 -0.08 9.28 16 17 O -0.53 -11.94 15.99 5.55 0.09 -11.85 16 18 C -0.16 -2.09 5.73 -91.77 -0.53 -2.62 16 19 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.13 -1.68 6.33 -89.53 -0.57 -2.24 16 21 H 0.12 1.80 7.78 -51.93 -0.40 1.40 16 22 C -0.10 -0.88 6.79 -23.87 -0.16 -1.04 16 23 C -0.12 -1.00 6.96 -23.54 -0.16 -1.17 16 24 C -0.09 -0.87 6.63 -25.06 -0.17 -1.04 16 25 C -0.14 -1.77 6.64 -89.52 -0.59 -2.37 16 26 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 27 C 0.12 2.81 3.77 -3.72 -0.01 2.80 16 28 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 29 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 30 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.39 4.69 8.60 -40.82 -0.35 4.34 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 2.09 4.50 -51.93 -0.23 1.85 16 43 H 0.02 0.55 6.97 -51.93 -0.36 0.19 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -34.91 334.26 -9.28 -44.19 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.27 Total: 2.92 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.02 Total: -4.62 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.02 Total: -55.30 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.14 Total: 19.62 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.91 -9.28 -44.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007041710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.553 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds