Wall clock time and date at job start Tue Mar 31 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00053 * 2 1 4 4 H 1.48494 * 109.47225 * 270.00163 * 3 2 1 5 5 H 1.48501 * 109.46797 * 30.00028 * 3 2 1 6 6 H 1.48497 * 109.47032 * 149.99789 * 3 2 1 7 7 C 1.38812 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 197.35918 * 7 2 1 9 9 N 1.36931 * 119.99661 * 17.35460 * 7 2 1 10 10 C 1.46927 * 120.63063 * 207.69852 * 9 7 2 11 11 C 1.53193 * 108.77501 * 233.58667 * 10 9 7 12 12 C 1.53035 * 109.31762 * 305.36514 * 11 10 9 13 13 C 1.53042 * 109.53849 * 61.36116 * 12 11 10 14 14 H 1.09006 * 109.49368 * 58.61950 * 13 12 11 15 15 N 1.46494 * 109.49854 * 178.68363 * 13 12 11 16 16 C 1.34776 * 119.99822 * 204.99853 * 15 13 12 17 17 O 1.21279 * 120.00374 * 0.02562 * 16 15 13 18 18 C 1.50709 * 119.99968 * 179.97438 * 16 15 13 19 19 C 1.52997 * 119.29982 * 250.95670 * 18 16 15 20 20 C 1.53874 * 121.32870 * 179.11815 * 18 16 15 21 21 H 1.08998 * 121.33189 * 359.43686 * 20 18 16 22 22 C 1.54270 * 106.59830 * 221.93787 * 20 18 16 23 23 C 1.54893 * 104.19150 * 23.61272 * 22 20 18 24 24 C 1.54258 * 117.40867 * 45.29891 * 18 16 15 25 25 C 1.46928 * 120.63259 * 27.68138 * 9 7 2 26 26 H 0.96999 * 120.00020 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58486 * 113.80142 * 10 9 7 28 28 H 1.08992 * 109.58855 * 353.37599 * 10 9 7 29 29 H 1.09005 * 109.49592 * 185.41171 * 11 10 9 30 30 H 1.08998 * 109.49725 * 65.31980 * 11 10 9 31 31 H 1.08997 * 109.46525 * 181.38687 * 12 11 10 32 32 H 1.08997 * 109.45973 * 301.36007 * 12 11 10 33 33 H 0.96993 * 120.00438 * 25.00538 * 15 13 12 34 34 H 1.08995 * 117.46046 * 356.28711 * 19 18 16 35 35 H 1.09002 * 117.46146 * 141.09571 * 19 18 16 36 36 H 1.09001 * 110.48665 * 264.93783 * 22 20 18 37 37 H 1.09000 * 110.48778 * 142.28949 * 22 20 18 38 38 H 1.09007 * 110.75233 * 203.73802 * 23 22 20 39 39 H 1.09006 * 110.91215 * 80.44916 * 23 22 20 40 40 H 1.09001 * 110.48921 * 235.04436 * 24 18 16 41 41 H 1.08998 * 110.49011 * 357.55617 * 24 18 16 42 42 H 1.08995 * 109.58316 * 6.61735 * 25 9 7 43 43 H 1.09010 * 109.58472 * 246.19677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3608 -0.3548 10 6 1.8192 -3.6547 0.1791 11 6 2.0742 -4.6095 -0.9914 12 6 0.8185 -4.6890 -1.8626 13 6 0.5006 -3.3035 -2.4298 14 1 1.3491 -2.9459 -3.0133 15 7 -0.6832 -3.3867 -3.2888 16 6 -0.8694 -2.4808 -4.2691 17 8 -0.0567 -1.5970 -4.4405 18 6 -2.0869 -2.5666 -5.1532 19 6 -1.9236 -2.9948 -6.6129 20 6 -2.3401 -1.5371 -6.2684 21 1 -1.6507 -0.7114 -6.4447 22 6 -3.8443 -1.1979 -6.2218 23 6 -4.2655 -1.5382 -4.7706 24 6 -3.4459 -2.8170 -4.4678 25 6 0.2279 -2.3339 -1.2757 26 1 -0.4850 0.8400 -0.0004 27 1 1.0468 -4.0690 0.8270 28 1 2.7399 -3.5177 0.7461 29 1 2.3134 -5.6010 -0.6067 30 1 2.9080 -4.2394 -1.5879 31 1 0.9888 -5.3867 -2.6825 32 1 -0.0206 -5.0354 -1.2594 33 1 -1.3330 -4.0936 -3.1520 34 1 -0.9102 -3.1642 -6.9767 35 1 -2.6887 -3.6469 -7.0341 36 1 -4.3961 -1.8123 -6.9332 37 1 -4.0032 -0.1392 -6.4268 38 1 -5.3349 -1.7427 -4.7167 39 1 -3.9928 -0.7337 -4.0875 40 1 -3.9336 -3.6929 -4.8959 41 1 -3.3139 -2.9423 -3.3931 42 1 0.0986 -1.3254 -1.6684 43 1 -0.6744 -2.6405 -0.7463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007988402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:46 Heat of formation + Delta-G solvation = 0.850896 kcal Electronic energy + Delta-G solvation = -22665.633497 eV Core-core repulsion = 19518.459236 eV Total energy + Delta-G solvation = -3147.174260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27810 -38.33369 -36.90755 -34.06042 -32.63295 -31.59019 -30.04925 -29.30575 -27.90732 -25.23802 -23.64977 -22.37940 -22.08537 -21.14859 -20.25017 -19.49948 -18.61116 -16.94896 -16.72485 -15.57915 -15.11701 -15.03301 -14.39137 -14.03486 -13.92511 -13.53682 -13.34175 -13.13366 -12.99825 -12.94130 -12.38956 -12.27850 -11.87249 -11.69781 -11.17780 -11.13014 -10.99342 -10.95072 -10.70855 -10.70509 -10.45329 -10.32218 -10.20711 -9.95437 -9.90838 -9.67510 -9.48355 -9.17153 -8.46516 -8.39490 -6.62959 -5.72427 -3.15703 2.91766 3.44975 3.51747 3.52788 3.55683 3.68099 4.39099 4.56765 4.58976 4.76909 5.02652 5.19148 5.32900 5.38411 5.40205 5.43651 5.51614 5.56805 5.61075 5.64121 5.66796 5.73071 5.79318 5.90712 6.02836 6.05256 6.11989 6.17479 6.19208 6.35303 6.36771 6.44451 6.53975 6.73046 6.80267 6.97881 7.02692 7.34287 7.76349 7.86427 8.03501 8.51159 8.76045 9.26164 9.90263 10.45053 11.35416 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.005809 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.682648 B = 4818.547027 C = 5883.717433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.117 3.883 14 H 0.080 0.920 15 N -0.716 5.716 16 C 0.551 3.449 17 O -0.534 6.534 18 C -0.173 4.173 19 C -0.126 4.126 20 C -0.132 4.132 21 H 0.119 0.881 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.087 4.087 25 C 0.168 3.832 26 H 0.253 0.747 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.392 0.608 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 -9.655 -10.776 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.098 0.902 15 N -0.366 5.366 16 C 0.336 3.664 17 O -0.410 6.410 18 C -0.176 4.176 19 C -0.163 4.163 20 C -0.151 4.151 21 H 0.137 0.863 22 C -0.132 4.132 23 C -0.161 4.161 24 C -0.124 4.124 25 C 0.041 3.959 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -7.394 -8.844 -10.831 15.817 hybrid contribution 0.118 0.483 0.154 0.521 sum -7.277 -8.360 -10.677 15.390 Atomic orbital electron populations 1.70018 1.05325 1.25487 1.53418 1.25027 0.95270 0.98469 1.00502 0.86304 0.79078 0.83669 0.77814 1.21283 1.21772 1.20397 1.19159 0.92737 0.84870 1.41850 0.91583 1.43977 1.36034 1.01610 1.49553 1.20953 0.97692 0.86886 0.92865 1.22004 0.96995 0.99309 0.98781 1.21669 0.98874 0.96090 0.98723 1.21963 0.87126 0.96806 0.92977 0.90177 1.45985 1.26139 1.30959 1.33492 1.19233 0.85508 0.81454 0.80168 1.90731 1.45411 1.34151 1.70675 1.22464 0.95498 1.09010 0.90614 1.23433 1.02752 0.96645 0.93469 1.23733 0.97405 0.92629 1.01288 0.86262 1.21982 0.92862 1.01524 0.96880 1.22688 0.99284 0.97705 0.96446 1.21933 0.91682 0.98185 1.00634 1.21084 0.88633 0.98989 0.87216 0.93700 0.96429 0.92641 0.92645 0.92150 0.93146 0.92296 0.77497 0.88077 0.88300 0.91323 0.90981 0.91172 0.90789 0.90969 0.90601 0.88759 0.96594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 11.19 55.49 0.62 -26.63 16 2 C 0.01 0.19 4.91 -17.43 -0.09 0.10 16 3 Si 0.90 22.93 29.59 -169.99 -5.03 17.90 16 4 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -7.35 9.58 -15.06 -0.14 -7.50 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -15.29 2.99 -172.32 -0.52 -15.81 16 10 C 0.14 3.01 6.52 -3.71 -0.02 2.99 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.12 -1.91 5.35 -26.69 -0.14 -2.05 16 13 C 0.12 2.35 2.60 -67.82 -0.18 2.17 16 14 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 15 N -0.72 -12.24 4.91 -53.69 -0.26 -12.51 16 16 C 0.55 10.19 7.38 -10.98 -0.08 10.11 16 17 O -0.53 -12.53 16.45 5.56 0.09 -12.44 16 18 C -0.17 -2.39 2.60 -154.54 -0.40 -2.79 16 19 C -0.13 -1.42 10.00 -25.42 -0.25 -1.68 16 20 C -0.13 -1.70 6.64 -88.19 -0.59 -2.29 16 21 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 22 C -0.10 -0.99 6.64 -25.07 -0.17 -1.15 16 23 C -0.12 -1.36 6.91 -24.74 -0.17 -1.53 16 24 C -0.09 -0.99 6.18 -25.08 -0.16 -1.15 16 25 C 0.17 4.19 4.89 -3.71 -0.02 4.18 16 26 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.39 5.37 8.12 -40.82 -0.33 5.04 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.93 7.60 -51.93 -0.39 0.54 16 42 H 0.09 2.79 6.04 -51.93 -0.31 2.47 16 43 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -33.41 340.18 -9.85 -43.26 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.31 Total: 4.11 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.57 Total: -3.01 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.16 Total: -54.95 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.41 -9.85 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007988402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.110 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds