Wall clock time and date at job start Tue Mar 31 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00053 * 2 1 4 4 H 1.48494 * 109.47225 * 270.00163 * 3 2 1 5 5 H 1.48501 * 109.46797 * 30.00028 * 3 2 1 6 6 H 1.48497 * 109.47032 * 149.99789 * 3 2 1 7 7 C 1.38812 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 197.35918 * 7 2 1 9 9 N 1.36931 * 119.99661 * 17.35460 * 7 2 1 10 10 C 1.46927 * 120.63063 * 207.69852 * 9 7 2 11 11 C 1.53193 * 108.77501 * 233.58667 * 10 9 7 12 12 C 1.53035 * 109.31762 * 305.36514 * 11 10 9 13 13 C 1.53042 * 109.53849 * 61.36116 * 12 11 10 14 14 H 1.09006 * 109.49368 * 58.61950 * 13 12 11 15 15 N 1.46494 * 109.49854 * 178.68363 * 13 12 11 16 16 C 1.34776 * 119.99822 * 204.99853 * 15 13 12 17 17 O 1.21279 * 120.00374 * 0.02562 * 16 15 13 18 18 C 1.50709 * 119.99968 * 179.97438 * 16 15 13 19 19 C 1.52997 * 119.29982 * 250.95670 * 18 16 15 20 20 C 1.53874 * 121.32870 * 179.11815 * 18 16 15 21 21 H 1.08998 * 121.33189 * 359.43686 * 20 18 16 22 22 C 1.54270 * 106.59830 * 221.93787 * 20 18 16 23 23 C 1.54893 * 104.19150 * 23.61272 * 22 20 18 24 24 C 1.54258 * 117.40867 * 45.29891 * 18 16 15 25 25 C 1.46928 * 120.63259 * 27.68138 * 9 7 2 26 26 H 0.96999 * 120.00020 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58486 * 113.80142 * 10 9 7 28 28 H 1.08992 * 109.58855 * 353.37599 * 10 9 7 29 29 H 1.09005 * 109.49592 * 185.41171 * 11 10 9 30 30 H 1.08998 * 109.49725 * 65.31980 * 11 10 9 31 31 H 1.08997 * 109.46525 * 181.38687 * 12 11 10 32 32 H 1.08997 * 109.45973 * 301.36007 * 12 11 10 33 33 H 0.96993 * 120.00438 * 25.00538 * 15 13 12 34 34 H 1.08995 * 117.46046 * 356.28711 * 19 18 16 35 35 H 1.09002 * 117.46146 * 141.09571 * 19 18 16 36 36 H 1.09001 * 110.48665 * 264.93783 * 22 20 18 37 37 H 1.09000 * 110.48778 * 142.28949 * 22 20 18 38 38 H 1.09007 * 110.75233 * 203.73802 * 23 22 20 39 39 H 1.09006 * 110.91215 * 80.44916 * 23 22 20 40 40 H 1.09001 * 110.48921 * 235.04436 * 24 18 16 41 41 H 1.08998 * 110.49011 * 357.55617 * 24 18 16 42 42 H 1.08995 * 109.58316 * 6.61735 * 25 9 7 43 43 H 1.09010 * 109.58472 * 246.19677 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2785 9 7 1.3724 -2.3608 -0.3548 10 6 1.8192 -3.6547 0.1791 11 6 2.0742 -4.6095 -0.9914 12 6 0.8185 -4.6890 -1.8626 13 6 0.5006 -3.3035 -2.4298 14 1 1.3491 -2.9459 -3.0133 15 7 -0.6832 -3.3867 -3.2888 16 6 -0.8694 -2.4808 -4.2691 17 8 -0.0567 -1.5970 -4.4405 18 6 -2.0869 -2.5666 -5.1532 19 6 -1.9236 -2.9948 -6.6129 20 6 -2.3401 -1.5371 -6.2684 21 1 -1.6507 -0.7114 -6.4447 22 6 -3.8443 -1.1979 -6.2218 23 6 -4.2655 -1.5382 -4.7706 24 6 -3.4459 -2.8170 -4.4678 25 6 0.2279 -2.3339 -1.2757 26 1 -0.4850 0.8400 -0.0004 27 1 1.0468 -4.0690 0.8270 28 1 2.7399 -3.5177 0.7461 29 1 2.3134 -5.6010 -0.6067 30 1 2.9080 -4.2394 -1.5879 31 1 0.9888 -5.3867 -2.6825 32 1 -0.0206 -5.0354 -1.2594 33 1 -1.3330 -4.0936 -3.1520 34 1 -0.9102 -3.1642 -6.9767 35 1 -2.6887 -3.6469 -7.0341 36 1 -4.3961 -1.8123 -6.9332 37 1 -4.0032 -0.1392 -6.4268 38 1 -5.3349 -1.7427 -4.7167 39 1 -3.9928 -0.7337 -4.0875 40 1 -3.9336 -3.6929 -4.8959 41 1 -3.3139 -2.9423 -3.3931 42 1 0.0986 -1.3254 -1.6684 43 1 -0.6744 -2.6405 -0.7463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007988402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:46 Heat of formation + Delta-G solvation = -20.966376 kcal Electronic energy + Delta-G solvation = -22666.579565 eV Core-core repulsion = 19518.459236 eV Total energy + Delta-G solvation = -3148.120328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53430 -39.75484 -38.51068 -35.84162 -34.46349 -32.51944 -31.96910 -30.84136 -29.02754 -27.28045 -24.95470 -23.95859 -23.46664 -22.56300 -21.25024 -21.16929 -19.96792 -18.77955 -18.13428 -17.21410 -16.85036 -16.25167 -16.00523 -15.58282 -15.46732 -15.25515 -14.72511 -14.47087 -14.22521 -14.06202 -14.04578 -13.90968 -13.50922 -12.97490 -12.81106 -12.74013 -12.50962 -12.28460 -12.08075 -12.06438 -12.02651 -11.85937 -11.71693 -11.62150 -11.32046 -11.30131 -10.67534 -10.61662 -10.59135 -10.10427 -8.73673 -7.93187 -5.39019 1.36277 1.42248 1.48041 1.54920 2.18054 2.45501 2.59320 3.22828 3.47282 3.58906 3.65591 3.80264 3.91129 3.99387 4.10979 4.24403 4.26621 4.41365 4.44894 4.49354 4.58595 4.65616 4.74952 4.79083 4.80089 4.89303 4.96429 5.00004 5.05962 5.14283 5.17627 5.19433 5.20282 5.28513 5.30395 5.44456 5.46703 5.50258 5.57989 5.74389 6.32228 6.63583 7.07539 7.34190 7.81119 8.30054 9.11387 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.005809 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.682648 B = 4818.547027 C = 5883.717433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.052 4.052 3 Si 0.961 3.039 4 H -0.297 1.297 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.046 0.954 15 N -0.702 5.702 16 C 0.541 3.459 17 O -0.597 6.597 18 C -0.189 4.189 19 C -0.094 4.094 20 C -0.148 4.148 21 H 0.087 0.913 22 C -0.085 4.085 23 C -0.126 4.126 24 C -0.080 4.080 25 C 0.181 3.819 26 H 0.247 0.753 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.039 0.961 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.946 -12.642 -11.927 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.247 4.247 3 Si 0.789 3.211 4 H -0.225 1.225 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.023 3.977 14 H 0.064 0.936 15 N -0.353 5.353 16 C 0.329 3.671 17 O -0.477 6.477 18 C -0.193 4.193 19 C -0.131 4.131 20 C -0.167 4.167 21 H 0.105 0.895 22 C -0.123 4.123 23 C -0.164 4.164 24 C -0.117 4.117 25 C 0.054 3.946 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.249 0.751 34 H 0.111 0.889 35 H 0.159 0.841 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.129 0.871 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -8.448 -11.900 -11.965 18.872 hybrid contribution 0.488 1.408 0.539 1.585 sum -7.960 -10.492 -11.426 17.435 Atomic orbital electron populations 1.70172 1.06694 1.25558 1.55146 1.25803 0.96079 1.01631 1.01206 0.85355 0.78737 0.79896 0.77103 1.22458 1.21556 1.18303 1.19525 0.93091 0.86283 1.40672 0.91302 1.44269 1.35984 1.02786 1.50420 1.21193 0.97606 0.85511 0.94667 1.21909 0.96928 1.00240 0.97032 1.21637 0.99151 0.93723 0.99834 1.21512 0.87057 0.98113 0.91007 0.93611 1.45819 1.25719 1.31259 1.32494 1.20202 0.86254 0.80245 0.80404 1.90696 1.48056 1.36553 1.72439 1.22503 0.94393 1.11244 0.91115 1.23576 1.03605 0.95472 0.90403 1.23861 0.98740 0.92820 1.01294 0.89496 1.21984 0.90936 1.02242 0.97096 1.22713 1.00970 0.96559 0.96142 1.21982 0.90221 0.99788 0.99724 1.20752 0.88064 0.97357 0.88400 0.94450 0.95901 0.92564 0.88190 0.93164 0.89565 0.90599 0.75056 0.88876 0.84109 0.88002 0.91097 0.88233 0.94158 0.87064 0.92125 0.94228 0.98270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.39 11.19 21.65 0.24 -59.14 16 2 C -0.05 -3.13 4.91 84.86 0.42 -2.71 16 3 Si 0.96 48.94 29.59 68.60 2.03 50.97 16 4 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.27 -15.68 9.58 84.03 0.81 -14.88 16 8 H 0.07 3.93 7.89 -2.91 -0.02 3.90 16 9 N -0.61 -32.58 2.99 -699.10 -2.09 -34.67 16 10 C 0.14 5.60 6.52 86.36 0.56 6.16 16 11 C -0.12 -3.89 6.08 30.67 0.19 -3.70 16 12 C -0.11 -3.21 5.35 30.62 0.16 -3.05 16 13 C 0.13 5.30 2.60 45.07 0.12 5.42 16 14 H 0.05 2.20 7.58 -2.38 -0.02 2.18 16 15 N -0.70 -24.10 4.91 -442.17 -2.17 -26.27 16 16 C 0.54 20.72 7.38 87.66 0.65 21.37 16 17 O -0.60 -30.11 16.45 -3.03 -0.05 -30.16 16 18 C -0.19 -5.08 2.60 -52.20 -0.14 -5.22 16 19 C -0.09 -1.87 10.00 31.44 0.31 -1.56 16 20 C -0.15 -3.76 6.64 -9.22 -0.06 -3.82 16 21 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 22 C -0.09 -1.59 6.64 31.67 0.21 -1.38 16 23 C -0.13 -2.58 6.91 31.89 0.22 -2.36 16 24 C -0.08 -1.64 6.18 31.66 0.20 -1.45 16 25 C 0.18 9.49 4.89 86.36 0.42 9.91 16 26 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 29 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.41 10.65 8.12 -92.71 -0.75 9.89 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.43 7.60 -2.39 -0.02 1.41 16 42 H 0.04 2.50 6.04 -2.39 -0.01 2.49 16 43 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 Total: -1.00 -80.19 340.18 2.26 -77.93 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.23 Total: 18.60 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.07 Total: 2.74 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -4.02 Total: -120.08 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.05 Total: -30.16 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Total: -80.19 2.26 -77.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007988402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.966 kcal (2) G-P(sol) polarization free energy of solvation -80.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds