Wall clock time and date at job start Tue Mar 31 2020 00:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99442 * 2 1 4 4 H 1.48497 * 109.47295 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 120.00190 * 3 2 1 6 6 H 1.48499 * 109.46835 * 239.99821 * 3 2 1 7 7 C 1.38810 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99821 * 206.63702 * 7 2 1 9 9 N 1.36937 * 119.99777 * 26.64446 * 7 2 1 10 10 C 1.47427 * 125.65104 * 15.98155 * 9 7 2 11 11 C 1.55124 * 104.72099 * 155.81578 * 10 9 7 12 12 C 1.55150 * 101.48908 * 37.29776 * 11 10 9 13 13 H 1.08997 * 110.72248 * 82.68987 * 12 11 10 14 14 N 1.46504 * 110.87446 * 205.89821 * 12 11 10 15 15 C 1.34778 * 119.99818 * 200.06298 * 14 12 11 16 16 O 1.21613 * 119.99888 * 359.97438 * 15 14 12 17 17 C 1.47100 * 119.99360 * 179.97438 * 15 14 12 18 18 C 1.32997 * 119.99576 * 186.21554 * 17 15 14 19 19 C 1.51272 * 120.85141 * 16.90949 * 18 17 15 20 20 C 1.53668 * 108.31202 * 128.61445 * 19 18 17 21 21 C 1.52956 * 109.32146 * 54.86266 * 20 19 18 22 22 C 1.52958 * 109.81982 * 296.27309 * 21 20 19 23 23 C 1.51273 * 120.85071 * 197.19049 * 18 17 15 24 24 C 1.47022 * 125.64829 * 196.28820 * 9 7 2 25 25 H 0.97001 * 119.99851 * 186.43474 * 1 2 3 26 26 H 1.09000 * 110.36399 * 274.74651 * 10 9 7 27 27 H 1.09006 * 110.36178 * 37.06893 * 10 9 7 28 28 H 1.08999 * 111.19264 * 279.18888 * 11 10 9 29 29 H 1.09007 * 110.90360 * 155.27385 * 11 10 9 30 30 H 0.96996 * 119.99486 * 20.05932 * 14 12 11 31 31 H 1.07994 * 120.00406 * 6.21426 * 17 15 14 32 32 H 1.08997 * 109.62705 * 248.39249 * 19 18 17 33 33 H 1.09003 * 109.62308 * 8.96371 * 19 18 17 34 34 H 1.09002 * 109.62889 * 294.84791 * 20 19 18 35 35 H 1.09000 * 109.42744 * 174.76030 * 20 19 18 36 36 H 1.08995 * 109.41384 * 176.16447 * 21 20 19 37 37 H 1.09005 * 109.35512 * 56.34304 * 21 20 19 38 38 H 1.08998 * 109.48284 * 303.61866 * 22 21 20 39 39 H 1.09003 * 109.49772 * 183.58706 * 22 21 20 40 40 H 1.08996 * 109.62219 * 351.03894 * 23 18 17 41 41 H 1.08994 * 109.62682 * 111.61476 * 23 18 17 42 42 H 1.09004 * 109.87736 * 300.44230 * 24 9 7 43 43 H 1.09000 * 109.88153 * 61.44724 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0043 -1.2518 0.4188 9 7 1.4347 -2.3248 -0.5329 10 6 0.2572 -2.3487 -1.4196 11 6 0.3867 -3.6765 -2.2112 12 6 0.9553 -4.6288 -1.1263 13 1 0.1545 -5.0216 -0.4999 14 7 1.7160 -5.7214 -1.7377 15 6 1.9456 -6.8536 -1.0433 16 8 1.5217 -6.9679 0.0908 17 6 2.7090 -7.9508 -1.6574 18 6 2.8304 -9.1131 -1.0225 19 6 1.9078 -9.4724 0.1212 20 6 1.3152 -10.8630 -0.1551 21 6 2.4514 -11.8608 -0.3848 22 6 3.2376 -11.4722 -1.6380 23 6 3.8988 -10.1070 -1.4213 24 6 1.8848 -3.7065 -0.3097 25 1 -0.4850 -0.8348 0.0941 26 1 -0.6606 -2.3428 -0.8317 27 1 0.2779 -1.4979 -2.1007 28 1 1.0826 -3.5727 -3.0436 29 1 -0.5881 -4.0185 -2.5592 30 1 2.0544 -5.6300 -2.6421 31 1 3.1708 -7.8127 -2.6238 32 1 2.4710 -9.4900 1.0542 33 1 1.1052 -8.7379 0.1886 34 1 0.6827 -10.8218 -1.0420 35 1 0.7202 -11.1802 0.7013 36 1 2.0356 -12.8601 -0.5133 37 1 3.1180 -11.8540 0.4777 38 1 2.5596 -11.4167 -2.4897 39 1 4.0052 -12.2212 -1.8327 40 1 4.3759 -9.7805 -2.3453 41 1 4.6430 -10.1824 -0.6285 42 1 2.9137 -3.8208 -0.6510 43 1 1.8166 -3.9520 0.7501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010331756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:22 Heat of formation + Delta-G solvation = -11.984056 kcal Electronic energy + Delta-G solvation = -21605.337470 eV Core-core repulsion = 18457.606644 eV Total energy + Delta-G solvation = -3147.730826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.97234 -38.37649 -37.22530 -34.15723 -32.85651 -31.90817 -31.17885 -29.16790 -27.82588 -26.36934 -24.27999 -23.15886 -22.05295 -20.66313 -20.52300 -19.81743 -18.61121 -17.51495 -16.82461 -16.08598 -15.51801 -14.77926 -14.61804 -14.50849 -14.26046 -13.85702 -13.67721 -13.44500 -13.21649 -13.00307 -12.78030 -12.53268 -12.25776 -12.09396 -11.72847 -11.36947 -11.18821 -11.09590 -10.78667 -10.74709 -10.66371 -10.52812 -10.48904 -10.11413 -9.99251 -9.50071 -9.43757 -9.00209 -8.70037 -8.38058 -6.91803 -6.05559 -3.11451 1.29517 3.36341 3.44808 3.52557 3.55920 3.74074 4.46327 4.47771 4.63020 4.65014 4.78448 4.92453 5.05824 5.16191 5.16816 5.23710 5.29346 5.34490 5.39525 5.43928 5.61650 5.63704 5.69527 5.71284 5.76014 5.80822 5.86073 6.01342 6.06294 6.13017 6.17188 6.30054 6.40055 6.45414 6.62361 6.72632 6.92820 6.98052 7.02864 7.76138 7.81786 8.45885 8.51551 9.05558 9.84483 10.38637 11.26632 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043305 B = 0.003047 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.413976 B = 9186.183603 C = 9292.403686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.027 4.027 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.603 5.603 10 C 0.146 3.854 11 C -0.141 4.141 12 C 0.133 3.867 13 H 0.091 0.909 14 N -0.714 5.714 15 C 0.545 3.455 16 O -0.540 6.540 17 C -0.230 4.230 18 C -0.024 4.024 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.093 4.093 24 C 0.129 3.871 25 H 0.269 0.731 26 H 0.029 0.971 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.398 0.602 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -22.546 -6.650 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.229 4.229 3 Si 0.896 3.104 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.180 4.180 12 C 0.028 3.972 13 H 0.109 0.891 14 N -0.363 5.363 15 C 0.334 3.666 16 O -0.420 6.420 17 C -0.251 4.251 18 C -0.026 4.026 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.130 4.130 24 C 0.002 3.998 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 4.452 -20.865 -5.874 22.128 hybrid contribution 0.525 -1.601 -0.369 1.725 sum 4.977 -22.466 -6.243 23.843 Atomic orbital electron populations 1.70781 1.06571 1.30291 1.48584 1.25763 0.96510 1.01011 0.99569 0.83510 0.74750 0.76036 0.76143 1.21046 1.22037 1.22148 1.19776 0.98728 0.87582 1.40035 0.91712 1.44540 1.33780 1.00628 1.54153 1.21568 0.90912 0.93690 0.91814 1.23145 1.00260 0.97165 0.97410 1.22016 0.94037 0.85855 0.95292 0.89054 1.45969 1.56245 1.16151 1.17974 1.18549 0.79376 0.82759 0.85869 1.90685 1.52032 1.80773 1.18534 1.22348 1.06717 0.94434 1.01629 1.22677 0.92626 0.92925 0.94350 1.21485 0.99797 0.97605 0.95963 1.21683 0.97530 0.94519 1.01735 1.21566 0.97752 0.98747 0.98033 1.21580 0.99467 0.96012 0.98406 1.20976 0.95871 0.94027 1.02101 1.21636 0.95698 0.85510 0.96949 0.91961 0.95291 0.92594 0.91230 0.91283 0.76804 0.85720 0.90600 0.86983 0.92060 0.91549 0.92023 0.91828 0.91758 0.91649 0.90818 0.89699 0.95563 0.95414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.35 12.88 55.49 0.71 -27.63 16 2 C -0.03 -0.80 5.11 -17.43 -0.09 -0.89 16 3 Si 1.07 25.84 29.99 -169.99 -5.10 20.74 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.33 -9.76 10.04 -15.06 -0.15 -9.91 16 8 H 0.07 1.90 7.96 -52.49 -0.42 1.48 16 9 N -0.60 -15.93 3.30 -169.93 -0.56 -16.49 16 10 C 0.15 3.43 5.26 -2.41 -0.01 3.41 16 11 C -0.14 -2.48 6.71 -24.47 -0.16 -2.64 16 12 C 0.13 2.43 3.23 -66.10 -0.21 2.22 16 13 H 0.09 1.78 7.69 -51.93 -0.40 1.38 16 14 N -0.71 -10.58 5.13 -53.21 -0.27 -10.85 16 15 C 0.54 8.37 7.57 -12.66 -0.10 8.27 16 16 O -0.54 -10.11 13.14 5.27 0.07 -10.04 16 17 C -0.23 -2.69 9.63 -37.81 -0.36 -3.05 16 18 C -0.02 -0.26 5.35 -100.60 -0.54 -0.80 16 19 C -0.11 -1.30 5.21 -27.26 -0.14 -1.44 16 20 C -0.12 -1.06 5.95 -26.41 -0.16 -1.22 16 21 C -0.12 -0.91 5.81 -26.77 -0.16 -1.07 16 22 C -0.12 -0.81 5.94 -26.63 -0.16 -0.97 16 23 C -0.09 -0.73 6.04 -27.48 -0.17 -0.90 16 24 C 0.13 2.93 6.99 -3.06 -0.02 2.91 16 25 H 0.27 8.28 5.91 -40.82 -0.24 8.04 16 26 H 0.03 0.73 6.79 -51.93 -0.35 0.37 16 27 H 0.06 1.41 7.87 -51.93 -0.41 1.01 16 28 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.40 4.72 8.51 -40.82 -0.35 4.37 16 31 H 0.12 1.12 7.99 -52.49 -0.42 0.70 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.63 5.13 -51.93 -0.27 1.36 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.50 7.94 -51.93 -0.41 0.09 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 337.85 15.07 5.09 5.09 Total: -1.00 -33.50 337.85 -9.61 -43.11 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.12 Total: 2.14 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.43 Total: -6.07 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.12 Total: -54.97 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.10 Total: 20.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.50 -9.61 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010331756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.125 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds