Wall clock time and date at job start Tue Mar 31 2020 00:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99442 * 2 1 4 4 H 1.48497 * 109.47295 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47080 * 120.00190 * 3 2 1 6 6 H 1.48499 * 109.46835 * 239.99821 * 3 2 1 7 7 C 1.38810 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99821 * 206.63702 * 7 2 1 9 9 N 1.36937 * 119.99777 * 26.64446 * 7 2 1 10 10 C 1.47427 * 125.65104 * 15.98155 * 9 7 2 11 11 C 1.55124 * 104.72099 * 155.81578 * 10 9 7 12 12 C 1.55150 * 101.48908 * 37.29776 * 11 10 9 13 13 H 1.08997 * 110.72248 * 82.68987 * 12 11 10 14 14 N 1.46504 * 110.87446 * 205.89821 * 12 11 10 15 15 C 1.34778 * 119.99818 * 200.06298 * 14 12 11 16 16 O 1.21613 * 119.99888 * 359.97438 * 15 14 12 17 17 C 1.47100 * 119.99360 * 179.97438 * 15 14 12 18 18 C 1.32997 * 119.99576 * 186.21554 * 17 15 14 19 19 C 1.51272 * 120.85141 * 16.90949 * 18 17 15 20 20 C 1.53668 * 108.31202 * 128.61445 * 19 18 17 21 21 C 1.52956 * 109.32146 * 54.86266 * 20 19 18 22 22 C 1.52958 * 109.81982 * 296.27309 * 21 20 19 23 23 C 1.51273 * 120.85071 * 197.19049 * 18 17 15 24 24 C 1.47022 * 125.64829 * 196.28820 * 9 7 2 25 25 H 0.97001 * 119.99851 * 186.43474 * 1 2 3 26 26 H 1.09000 * 110.36399 * 274.74651 * 10 9 7 27 27 H 1.09006 * 110.36178 * 37.06893 * 10 9 7 28 28 H 1.08999 * 111.19264 * 279.18888 * 11 10 9 29 29 H 1.09007 * 110.90360 * 155.27385 * 11 10 9 30 30 H 0.96996 * 119.99486 * 20.05932 * 14 12 11 31 31 H 1.07994 * 120.00406 * 6.21426 * 17 15 14 32 32 H 1.08997 * 109.62705 * 248.39249 * 19 18 17 33 33 H 1.09003 * 109.62308 * 8.96371 * 19 18 17 34 34 H 1.09002 * 109.62889 * 294.84791 * 20 19 18 35 35 H 1.09000 * 109.42744 * 174.76030 * 20 19 18 36 36 H 1.08995 * 109.41384 * 176.16447 * 21 20 19 37 37 H 1.09005 * 109.35512 * 56.34304 * 21 20 19 38 38 H 1.08998 * 109.48284 * 303.61866 * 22 21 20 39 39 H 1.09003 * 109.49772 * 183.58706 * 22 21 20 40 40 H 1.08996 * 109.62219 * 351.03894 * 23 18 17 41 41 H 1.08994 * 109.62682 * 111.61476 * 23 18 17 42 42 H 1.09004 * 109.87736 * 300.44230 * 24 9 7 43 43 H 1.09000 * 109.88153 * 61.44724 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0043 -1.2518 0.4188 9 7 1.4347 -2.3248 -0.5329 10 6 0.2572 -2.3487 -1.4196 11 6 0.3867 -3.6765 -2.2112 12 6 0.9553 -4.6288 -1.1263 13 1 0.1545 -5.0216 -0.4999 14 7 1.7160 -5.7214 -1.7377 15 6 1.9456 -6.8536 -1.0433 16 8 1.5217 -6.9679 0.0908 17 6 2.7090 -7.9508 -1.6574 18 6 2.8304 -9.1131 -1.0225 19 6 1.9078 -9.4724 0.1212 20 6 1.3152 -10.8630 -0.1551 21 6 2.4514 -11.8608 -0.3848 22 6 3.2376 -11.4722 -1.6380 23 6 3.8988 -10.1070 -1.4213 24 6 1.8848 -3.7065 -0.3097 25 1 -0.4850 -0.8348 0.0941 26 1 -0.6606 -2.3428 -0.8317 27 1 0.2779 -1.4979 -2.1007 28 1 1.0826 -3.5727 -3.0436 29 1 -0.5881 -4.0185 -2.5592 30 1 2.0544 -5.6300 -2.6421 31 1 3.1708 -7.8127 -2.6238 32 1 2.4710 -9.4900 1.0542 33 1 1.1052 -8.7379 0.1886 34 1 0.6827 -10.8218 -1.0420 35 1 0.7202 -11.1802 0.7013 36 1 2.0356 -12.8601 -0.5133 37 1 3.1180 -11.8540 0.4777 38 1 2.5596 -11.4167 -2.4897 39 1 4.0052 -12.2212 -1.8327 40 1 4.3759 -9.7805 -2.3453 41 1 4.6430 -10.1824 -0.6285 42 1 2.9137 -3.8208 -0.6510 43 1 1.8166 -3.9520 0.7501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010331756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:22 Heat of formation + Delta-G solvation = -33.171422 kcal Electronic energy + Delta-G solvation = -21606.256223 eV Core-core repulsion = 18457.606644 eV Total energy + Delta-G solvation = -3148.649579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18680 -39.56646 -38.58678 -35.82132 -33.97627 -33.49229 -31.88501 -31.04232 -29.32140 -27.58658 -26.25732 -23.88317 -23.15733 -22.30887 -21.72694 -21.26051 -19.75576 -19.43544 -18.01433 -17.40039 -16.65017 -16.21934 -15.85908 -15.78655 -15.48829 -15.18966 -15.13718 -14.80581 -14.45508 -14.27415 -14.09508 -13.61581 -13.49743 -13.28236 -12.85806 -12.66329 -12.59001 -12.56038 -12.46014 -12.03362 -11.90229 -11.80464 -11.76756 -11.61389 -11.58752 -11.19144 -10.68739 -10.54277 -10.07872 -9.82489 -9.10416 -8.36986 -5.40671 0.34682 1.56162 1.64367 1.84137 2.14517 2.28812 2.63055 3.14396 3.46762 3.58141 3.73016 3.77971 3.87696 4.03198 4.05921 4.08262 4.20303 4.31707 4.36430 4.46250 4.49289 4.49670 4.63175 4.76837 4.78818 4.86117 4.91904 4.98101 5.00227 5.02817 5.13560 5.17924 5.18512 5.20159 5.32547 5.43651 5.51005 5.58261 5.61533 5.70019 6.25952 6.61500 6.83460 7.29356 7.64230 8.20266 8.94126 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043305 B = 0.003047 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.413976 B = 9186.183603 C = 9292.403686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.077 4.077 3 Si 1.121 2.879 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.352 4.352 8 H 0.057 0.943 9 N -0.624 5.624 10 C 0.145 3.855 11 C -0.116 4.116 12 C 0.151 3.849 13 H 0.076 0.924 14 N -0.702 5.702 15 C 0.538 3.462 16 O -0.582 6.582 17 C -0.241 4.241 18 C -0.016 4.016 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.090 4.090 24 C 0.129 3.871 25 H 0.255 0.745 26 H 0.007 0.993 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.416 0.584 31 H 0.159 0.841 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.029 0.971 43 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -24.324 -8.816 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.273 4.273 3 Si 0.944 3.056 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.481 4.481 8 H 0.074 0.926 9 N -0.352 5.352 10 C 0.019 3.981 11 C -0.154 4.154 12 C 0.045 3.955 13 H 0.095 0.905 14 N -0.353 5.353 15 C 0.330 3.670 16 O -0.465 6.465 17 C -0.262 4.262 18 C -0.018 4.018 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.127 4.127 24 C 0.002 3.998 25 H 0.066 0.934 26 H 0.025 0.975 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.254 0.746 31 H 0.177 0.823 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 6.074 -22.688 -8.079 24.838 hybrid contribution 0.011 -1.134 0.416 1.208 sum 6.085 -23.822 -7.663 25.753 Atomic orbital electron populations 1.70899 1.07505 1.29570 1.50777 1.27296 0.96597 1.04521 0.98847 0.82798 0.73795 0.71607 0.77395 1.21357 1.20292 1.20190 1.20056 0.98630 0.89126 1.40247 0.92551 1.44832 1.34378 1.01335 1.54661 1.21541 0.89007 0.96189 0.91321 1.23008 1.02715 0.92997 0.96724 1.21554 0.92849 0.86153 0.94983 0.90539 1.45755 1.55892 1.14982 1.18668 1.19270 0.78845 0.83472 0.85451 1.90692 1.53698 1.81557 1.20566 1.22383 1.07200 0.93340 1.03250 1.23011 0.92332 0.93364 0.93047 1.21421 0.99156 0.98456 0.96368 1.21656 0.98249 0.93430 1.01750 1.21572 0.97102 0.98748 0.98553 1.21591 0.99880 0.95764 0.97952 1.21064 0.94866 0.93653 1.03141 1.21706 0.96896 0.85090 0.96064 0.93398 0.97514 0.94848 0.88819 0.87933 0.74603 0.82327 0.91476 0.90263 0.92082 0.91520 0.90599 0.91786 0.91566 0.89638 0.88918 0.89074 0.95292 0.98598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.73 12.88 21.65 0.28 -59.45 16 2 C -0.08 -4.58 5.11 84.86 0.43 -4.15 16 3 Si 1.12 52.40 29.99 68.60 2.06 54.45 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.35 -21.14 10.04 84.03 0.84 -20.30 16 8 H 0.06 3.39 7.96 -2.91 -0.02 3.37 16 9 N -0.62 -33.90 3.30 -691.55 -2.28 -36.18 16 10 C 0.15 6.94 5.26 86.93 0.46 7.40 16 11 C -0.12 -3.90 6.71 32.06 0.22 -3.69 16 12 C 0.15 5.50 3.23 46.18 0.15 5.65 16 13 H 0.08 3.05 7.69 -2.39 -0.02 3.03 16 14 N -0.70 -19.81 5.13 -440.52 -2.26 -22.07 16 15 C 0.54 16.23 7.57 86.57 0.66 16.89 16 16 O -0.58 -22.53 13.14 -4.07 -0.05 -22.59 16 17 C -0.24 -5.13 9.63 23.43 0.23 -4.91 16 18 C -0.02 -0.31 5.35 -17.25 -0.09 -0.40 16 19 C -0.12 -2.73 5.21 30.25 0.16 -2.57 16 20 C -0.11 -1.94 5.95 30.80 0.18 -1.75 16 21 C -0.12 -1.50 5.81 30.57 0.18 -1.32 16 22 C -0.11 -1.18 5.94 30.66 0.18 -1.00 16 23 C -0.09 -1.13 6.04 30.11 0.18 -0.95 16 24 C 0.13 6.03 6.99 86.73 0.61 6.64 16 25 H 0.26 16.42 5.91 -92.71 -0.55 15.88 16 26 H 0.01 0.37 6.79 -2.39 -0.02 0.35 16 27 H 0.03 1.72 7.87 -2.38 -0.02 1.70 16 28 H 0.09 2.75 8.01 -2.39 -0.02 2.73 16 29 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 30 H 0.42 8.67 8.51 -92.71 -0.79 7.88 16 31 H 0.16 2.24 7.99 -2.91 -0.02 2.22 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.42 5.13 -2.39 -0.01 2.40 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.86 7.94 -2.39 -0.02 0.84 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.03 1.33 8.03 -2.38 -0.02 1.31 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -76.51 337.85 2.53 -73.97 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.42 Total: 16.33 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.38 Total: -4.46 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -4.27 Total: -117.71 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 52.40 SS G_CDS: 2.06 Total: 54.45 kcal Total: -76.51 2.53 -73.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010331756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.804 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds