Wall clock time and date at job start Tue Mar 31 2020 00:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47169 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47241 * 119.99984 * 3 2 1 6 6 H 1.48498 * 109.47167 * 239.99773 * 3 2 1 7 7 C 1.38817 * 120.00281 * 180.27409 * 2 1 3 8 8 H 1.07998 * 120.00156 * 206.65779 * 7 2 1 9 9 N 1.36929 * 119.99768 * 26.65482 * 7 2 1 10 10 C 1.47431 * 125.64950 * 15.95400 * 9 7 2 11 11 C 1.55127 * 104.72152 * 155.81508 * 10 9 7 12 12 C 1.55160 * 101.48767 * 37.29631 * 11 10 9 13 13 H 1.08998 * 110.71804 * 205.97148 * 12 11 10 14 14 N 1.46493 * 110.87097 * 82.76483 * 12 11 10 15 15 C 1.34781 * 120.00113 * 159.93571 * 14 12 11 16 16 O 1.21614 * 119.99552 * 0.02562 * 15 14 12 17 17 C 1.47096 * 120.00082 * 179.97438 * 15 14 12 18 18 C 1.32994 * 119.99686 * 186.20146 * 17 15 14 19 19 C 1.51261 * 120.85384 * 16.92175 * 18 17 15 20 20 C 1.53663 * 108.31035 * 128.61728 * 19 18 17 21 21 C 1.52954 * 109.32491 * 54.86352 * 20 19 18 22 22 C 1.52954 * 109.81786 * 296.27450 * 21 20 19 23 23 C 1.51279 * 120.84754 * 197.20659 * 18 17 15 24 24 C 1.47028 * 125.64997 * 196.25722 * 9 7 2 25 25 H 0.97007 * 119.99857 * 186.49107 * 1 2 3 26 26 H 1.09000 * 110.36830 * 274.74485 * 10 9 7 27 27 H 1.09000 * 110.36646 * 37.06684 * 10 9 7 28 28 H 1.09005 * 111.19339 * 279.19070 * 11 10 9 29 29 H 1.09001 * 110.93681 * 155.29095 * 11 10 9 30 30 H 0.97005 * 120.00470 * 339.93994 * 14 12 11 31 31 H 1.07995 * 120.00105 * 6.20436 * 17 15 14 32 32 H 1.09002 * 109.63348 * 248.39172 * 19 18 17 33 33 H 1.09003 * 109.62533 * 8.96054 * 19 18 17 34 34 H 1.09004 * 109.63132 * 294.84355 * 20 19 18 35 35 H 1.09007 * 109.41417 * 174.75741 * 20 19 18 36 36 H 1.08997 * 109.41491 * 176.16064 * 21 20 19 37 37 H 1.09007 * 109.41436 * 56.37758 * 21 20 19 38 38 H 1.08996 * 109.48059 * 303.61569 * 22 21 20 39 39 H 1.09002 * 109.48297 * 183.57576 * 22 21 20 40 40 H 1.08998 * 109.62143 * 351.03913 * 23 18 17 41 41 H 1.09002 * 109.62386 * 111.41835 * 23 18 17 42 42 H 1.08991 * 109.87960 * 300.44542 * 24 9 7 43 43 H 1.09006 * 109.87843 * 61.60977 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2124 7 6 2.0102 -1.2021 -0.0058 8 1 3.0041 -1.2538 0.4136 9 7 1.4348 -2.3224 -0.5431 10 6 0.2570 -2.3424 -1.4297 11 6 0.3865 -3.6665 -2.2275 12 6 0.9556 -4.6238 -1.1472 13 1 1.5221 -5.4326 -1.6085 14 7 -0.1180 -5.1592 -0.3065 15 6 0.0822 -6.2855 0.4061 16 8 1.1542 -6.8571 0.3516 17 6 -0.9957 -6.8228 1.2507 18 6 -0.7609 -7.8613 2.0477 19 6 0.6538 -8.2671 2.3967 20 6 0.7582 -8.3887 3.9249 21 6 -0.3162 -9.3527 4.4306 22 6 -1.7046 -8.7810 4.1390 23 6 -1.9019 -8.6708 2.6235 24 6 1.8852 -3.7051 -0.3265 25 1 -0.4850 -0.8347 0.0950 26 1 -0.6607 -2.3394 -0.8416 27 1 0.2774 -1.4884 -2.1068 28 1 1.0823 -3.5587 -3.0597 29 1 -0.5879 -4.0073 -2.5774 30 1 -0.9730 -4.7031 -0.2627 31 1 -1.9776 -6.3741 1.2235 32 1 0.8844 -9.2266 1.9336 33 1 1.3508 -7.5086 2.0401 34 1 0.6118 -7.4095 4.3810 35 1 1.7438 -8.7704 4.1916 36 1 -0.2004 -9.4929 5.5053 37 1 -0.2070 -10.3134 3.9271 38 1 -1.7928 -7.7927 4.5900 39 1 -2.4647 -9.4409 4.5574 40 1 -2.8477 -8.1717 2.4126 41 1 -1.9058 -9.6658 2.1785 42 1 2.9139 -3.8177 -0.6685 43 1 1.8146 -3.9564 0.7319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010331757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:25 Heat of formation + Delta-G solvation = -12.381974 kcal Electronic energy + Delta-G solvation = -21917.674266 eV Core-core repulsion = 18769.926185 eV Total energy + Delta-G solvation = -3147.748081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.92998 -38.36101 -37.18444 -33.96545 -32.77556 -31.82004 -31.09201 -29.16414 -27.81039 -26.44886 -24.29451 -23.08253 -22.11751 -20.58574 -20.24815 -19.86109 -18.56934 -17.51081 -16.81184 -15.98457 -15.26335 -14.85247 -14.56578 -14.39634 -14.23755 -13.74237 -13.61978 -13.42031 -13.37745 -13.01973 -12.68919 -12.47492 -12.16027 -11.91429 -11.88580 -11.26760 -11.03875 -10.95508 -10.77767 -10.71721 -10.62999 -10.46154 -10.43858 -10.28658 -9.99472 -9.51256 -9.33257 -8.93409 -8.60187 -8.40668 -6.92602 -6.06888 -3.12048 1.37734 3.45576 3.51717 3.53942 3.55679 3.73249 4.55195 4.56079 4.61687 4.73337 4.87550 5.01476 5.10809 5.21144 5.24716 5.26463 5.35216 5.38752 5.42787 5.47635 5.62291 5.67924 5.73744 5.77781 5.84758 5.90104 5.93544 6.06123 6.13656 6.19253 6.23732 6.29080 6.43460 6.49970 6.67492 6.70877 6.92677 6.97690 7.05587 7.79709 7.86443 8.49931 8.53882 9.04375 9.83533 10.38367 11.25223 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.003700 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.567961 B = 7566.440479 C = 7942.160424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.027 4.027 3 Si 1.064 2.936 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.603 5.603 10 C 0.144 3.856 11 C -0.144 4.144 12 C 0.132 3.868 13 H 0.090 0.910 14 N -0.708 5.708 15 C 0.547 3.453 16 O -0.546 6.546 17 C -0.228 4.228 18 C -0.026 4.026 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.092 4.092 24 C 0.128 3.872 25 H 0.267 0.733 26 H 0.024 0.976 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.400 0.600 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -17.901 3.742 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.228 4.228 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.460 4.460 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.018 3.982 11 C -0.183 4.183 12 C 0.027 3.973 13 H 0.108 0.892 14 N -0.358 5.358 15 C 0.337 3.663 16 O -0.427 6.427 17 C -0.249 4.249 18 C -0.028 4.028 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.129 4.129 24 C 0.001 3.999 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.234 0.766 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.050 0.950 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.421 -16.539 3.652 17.505 hybrid contribution -0.350 -1.343 0.224 1.406 sum -4.770 -17.883 3.876 18.909 Atomic orbital electron populations 1.70792 1.06576 1.30113 1.48778 1.25727 0.96489 1.00961 0.99614 0.83529 0.74785 0.76092 0.76175 1.21094 1.22067 1.22130 1.19783 0.98757 0.87869 1.39622 0.91744 1.44581 1.33628 1.00777 1.54068 1.21588 0.90683 0.94175 0.91719 1.23177 1.00666 0.97105 0.97380 1.21933 0.88648 0.95534 0.91162 0.89231 1.45914 1.17150 1.25905 1.46820 1.18509 0.87513 0.80075 0.80217 1.90650 1.26944 1.60085 1.65028 1.22359 0.99674 1.00524 1.02368 1.22657 0.96847 0.92302 0.90968 1.21466 0.94193 1.04048 0.94951 1.21692 0.98703 0.99698 0.95515 1.21555 0.94696 0.99029 1.00701 1.21582 0.97280 1.01604 0.95083 1.20960 0.96145 0.99796 0.95972 1.21705 0.95601 0.85540 0.97021 0.92145 0.95799 0.92818 0.90197 0.91290 0.76623 0.85680 0.90799 0.86940 0.91896 0.91568 0.92037 0.91941 0.91629 0.91682 0.90865 0.89839 0.94962 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 12.87 55.49 0.71 -27.12 16 2 C -0.03 -0.78 5.11 -17.43 -0.09 -0.87 16 3 Si 1.06 25.68 30.00 -169.99 -5.10 20.58 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.33 -9.62 10.04 -15.06 -0.15 -9.78 16 8 H 0.06 1.88 7.96 -52.49 -0.42 1.46 16 9 N -0.60 -15.59 3.30 -169.93 -0.56 -16.15 16 10 C 0.14 3.28 5.24 -2.41 -0.01 3.26 16 11 C -0.14 -2.52 6.66 -24.46 -0.16 -2.68 16 12 C 0.13 2.39 3.24 -66.10 -0.21 2.18 16 13 H 0.09 1.58 7.69 -51.93 -0.40 1.19 16 14 N -0.71 -11.53 5.11 -53.21 -0.27 -11.80 16 15 C 0.55 8.94 7.57 -12.66 -0.10 8.85 16 16 O -0.55 -10.29 13.13 5.26 0.07 -10.22 16 17 C -0.23 -2.99 9.63 -37.81 -0.36 -3.35 16 18 C -0.03 -0.31 5.35 -100.61 -0.54 -0.85 16 19 C -0.11 -1.39 5.21 -27.26 -0.14 -1.53 16 20 C -0.12 -1.24 5.95 -26.41 -0.16 -1.40 16 21 C -0.12 -1.04 5.81 -26.78 -0.16 -1.19 16 22 C -0.12 -0.96 5.94 -26.64 -0.16 -1.12 16 23 C -0.09 -0.81 6.04 -27.48 -0.17 -0.98 16 24 C 0.13 2.87 6.98 -3.06 -0.02 2.84 16 25 H 0.27 8.03 5.93 -40.82 -0.24 7.79 16 26 H 0.02 0.57 6.79 -51.93 -0.35 0.22 16 27 H 0.05 1.34 7.87 -51.93 -0.41 0.94 16 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.40 5.88 8.61 -40.82 -0.35 5.53 16 31 H 0.13 1.36 7.99 -52.49 -0.42 0.94 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.79 5.13 -51.93 -0.27 1.52 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.58 7.94 -51.93 -0.41 0.16 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -32.70 338.02 -9.62 -42.32 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.13 Total: 3.91 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.43 Total: -6.61 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.12 Total: -55.07 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.10 Total: 20.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.70 -9.62 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010331757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.937 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds