Wall clock time and date at job start Tue Mar 31 2020 00:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 119.99905 * 2 1 4 4 H 1.48495 * 109.47169 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47241 * 119.99984 * 3 2 1 6 6 H 1.48498 * 109.47167 * 239.99773 * 3 2 1 7 7 C 1.38817 * 120.00281 * 180.27409 * 2 1 3 8 8 H 1.07998 * 120.00156 * 206.65779 * 7 2 1 9 9 N 1.36929 * 119.99768 * 26.65482 * 7 2 1 10 10 C 1.47431 * 125.64950 * 15.95400 * 9 7 2 11 11 C 1.55127 * 104.72152 * 155.81508 * 10 9 7 12 12 C 1.55160 * 101.48767 * 37.29631 * 11 10 9 13 13 H 1.08998 * 110.71804 * 205.97148 * 12 11 10 14 14 N 1.46493 * 110.87097 * 82.76483 * 12 11 10 15 15 C 1.34781 * 120.00113 * 159.93571 * 14 12 11 16 16 O 1.21614 * 119.99552 * 0.02562 * 15 14 12 17 17 C 1.47096 * 120.00082 * 179.97438 * 15 14 12 18 18 C 1.32994 * 119.99686 * 186.20146 * 17 15 14 19 19 C 1.51261 * 120.85384 * 16.92175 * 18 17 15 20 20 C 1.53663 * 108.31035 * 128.61728 * 19 18 17 21 21 C 1.52954 * 109.32491 * 54.86352 * 20 19 18 22 22 C 1.52954 * 109.81786 * 296.27450 * 21 20 19 23 23 C 1.51279 * 120.84754 * 197.20659 * 18 17 15 24 24 C 1.47028 * 125.64997 * 196.25722 * 9 7 2 25 25 H 0.97007 * 119.99857 * 186.49107 * 1 2 3 26 26 H 1.09000 * 110.36830 * 274.74485 * 10 9 7 27 27 H 1.09000 * 110.36646 * 37.06684 * 10 9 7 28 28 H 1.09005 * 111.19339 * 279.19070 * 11 10 9 29 29 H 1.09001 * 110.93681 * 155.29095 * 11 10 9 30 30 H 0.97005 * 120.00470 * 339.93994 * 14 12 11 31 31 H 1.07995 * 120.00105 * 6.20436 * 17 15 14 32 32 H 1.09002 * 109.63348 * 248.39172 * 19 18 17 33 33 H 1.09003 * 109.62533 * 8.96054 * 19 18 17 34 34 H 1.09004 * 109.63132 * 294.84355 * 20 19 18 35 35 H 1.09007 * 109.41417 * 174.75741 * 20 19 18 36 36 H 1.08997 * 109.41491 * 176.16064 * 21 20 19 37 37 H 1.09007 * 109.41436 * 56.37758 * 21 20 19 38 38 H 1.08996 * 109.48059 * 303.61569 * 22 21 20 39 39 H 1.09002 * 109.48297 * 183.57576 * 22 21 20 40 40 H 1.08998 * 109.62143 * 351.03913 * 23 18 17 41 41 H 1.09002 * 109.62386 * 111.41835 * 23 18 17 42 42 H 1.08991 * 109.87960 * 300.44542 * 24 9 7 43 43 H 1.09006 * 109.87843 * 61.60977 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2124 7 6 2.0102 -1.2021 -0.0058 8 1 3.0041 -1.2538 0.4136 9 7 1.4348 -2.3224 -0.5431 10 6 0.2570 -2.3424 -1.4297 11 6 0.3865 -3.6665 -2.2275 12 6 0.9556 -4.6238 -1.1472 13 1 1.5221 -5.4326 -1.6085 14 7 -0.1180 -5.1592 -0.3065 15 6 0.0822 -6.2855 0.4061 16 8 1.1542 -6.8571 0.3516 17 6 -0.9957 -6.8228 1.2507 18 6 -0.7609 -7.8613 2.0477 19 6 0.6538 -8.2671 2.3967 20 6 0.7582 -8.3887 3.9249 21 6 -0.3162 -9.3527 4.4306 22 6 -1.7046 -8.7810 4.1390 23 6 -1.9019 -8.6708 2.6235 24 6 1.8852 -3.7051 -0.3265 25 1 -0.4850 -0.8347 0.0950 26 1 -0.6607 -2.3394 -0.8416 27 1 0.2774 -1.4884 -2.1068 28 1 1.0823 -3.5587 -3.0597 29 1 -0.5879 -4.0073 -2.5774 30 1 -0.9730 -4.7031 -0.2627 31 1 -1.9776 -6.3741 1.2235 32 1 0.8844 -9.2266 1.9336 33 1 1.3508 -7.5086 2.0401 34 1 0.6118 -7.4095 4.3810 35 1 1.7438 -8.7704 4.1916 36 1 -0.2004 -9.4929 5.5053 37 1 -0.2070 -10.3134 3.9271 38 1 -1.7928 -7.7927 4.5900 39 1 -2.4647 -9.4409 4.5574 40 1 -2.8477 -8.1717 2.4126 41 1 -1.9058 -9.6658 2.1785 42 1 2.9139 -3.8177 -0.6685 43 1 1.8146 -3.9564 0.7319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010331757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:24 Heat of formation + Delta-G solvation = -32.485740 kcal Electronic energy + Delta-G solvation = -21918.546030 eV Core-core repulsion = 18769.926185 eV Total energy + Delta-G solvation = -3148.619845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.21442 -39.59284 -38.54647 -35.68994 -33.90510 -33.44115 -31.90126 -30.99857 -29.37697 -27.63427 -26.30250 -23.91518 -23.24270 -22.14581 -21.60384 -21.31762 -19.72078 -19.46899 -18.06366 -17.25860 -16.48869 -16.31193 -16.00875 -15.66485 -15.44047 -15.23054 -15.15492 -14.78378 -14.59975 -14.35879 -13.81635 -13.63526 -13.57105 -13.25669 -12.85293 -12.65299 -12.59586 -12.47275 -12.28157 -12.05615 -11.97716 -11.88405 -11.78831 -11.63021 -11.58628 -11.21099 -10.57726 -10.53002 -10.12831 -9.81274 -9.06418 -8.34768 -5.37254 0.33633 1.56298 1.64023 1.83618 2.20583 2.30456 2.62043 3.16406 3.46335 3.60852 3.70436 3.75997 3.90677 4.01187 4.04558 4.13677 4.19208 4.31865 4.42852 4.44031 4.47651 4.51577 4.61021 4.76156 4.79091 4.88439 4.89648 4.97823 4.99203 5.03946 5.11783 5.15479 5.16238 5.22848 5.32003 5.42092 5.53662 5.60165 5.61672 5.68160 6.29478 6.58664 6.87415 7.26450 7.66694 8.23696 8.96747 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.003700 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.567961 B = 7566.440479 C = 7942.160424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.073 4.073 3 Si 1.117 2.883 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.353 4.353 8 H 0.053 0.947 9 N -0.623 5.623 10 C 0.146 3.854 11 C -0.122 4.122 12 C 0.147 3.853 13 H 0.100 0.900 14 N -0.707 5.707 15 C 0.540 3.460 16 O -0.577 6.577 17 C -0.249 4.249 18 C -0.014 4.014 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.089 4.089 24 C 0.127 3.873 25 H 0.257 0.743 26 H 0.014 0.986 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.408 0.592 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.027 0.973 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -19.341 3.796 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.269 4.269 3 Si 0.941 3.059 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.481 4.481 8 H 0.071 0.929 9 N -0.350 5.350 10 C 0.021 3.979 11 C -0.160 4.160 12 C 0.041 3.959 13 H 0.118 0.882 14 N -0.357 5.357 15 C 0.332 3.668 16 O -0.460 6.460 17 C -0.269 4.269 18 C -0.016 4.016 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.126 4.126 24 C 0.001 3.999 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.244 0.756 31 H 0.168 0.832 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.045 0.955 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -5.653 -18.009 3.706 19.235 hybrid contribution 0.094 -0.970 0.281 1.015 sum -5.559 -18.979 3.987 20.174 Atomic orbital electron populations 1.70897 1.07335 1.29586 1.50660 1.27139 0.96646 1.04176 0.98970 0.82841 0.73872 0.72012 0.77222 1.21262 1.20407 1.20632 1.20028 0.98584 0.89534 1.39967 0.92941 1.44833 1.34345 1.01312 1.54556 1.21560 0.89120 0.96050 0.91170 1.23075 1.03038 0.93322 0.96561 1.21692 0.88591 0.94972 0.90672 0.88208 1.45868 1.16958 1.26044 1.46792 1.19118 0.87880 0.79659 0.80113 1.90648 1.28425 1.60991 1.65974 1.22401 0.99666 1.01617 1.03231 1.23023 0.97496 0.91521 0.89587 1.21395 0.94192 1.02956 0.96488 1.21679 1.00102 0.99855 0.93822 1.21552 0.93995 0.98625 1.01506 1.21603 0.97625 1.01726 0.94491 1.21061 0.95188 1.00004 0.96305 1.21780 0.96640 0.85193 0.96316 0.93263 0.96811 0.95619 0.88974 0.87505 0.75639 0.83232 0.90368 0.90634 0.93207 0.91200 0.90780 0.90963 0.92476 0.89319 0.89341 0.88194 0.95467 0.98112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 12.87 21.65 0.28 -57.66 16 2 C -0.07 -4.29 5.11 84.86 0.43 -3.86 16 3 Si 1.12 52.15 30.00 68.60 2.06 54.21 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.35 -20.95 10.04 84.04 0.84 -20.10 16 8 H 0.05 3.16 7.96 -2.91 -0.02 3.13 16 9 N -0.62 -33.03 3.30 -691.54 -2.28 -35.31 16 10 C 0.15 6.72 5.24 86.93 0.46 7.18 16 11 C -0.12 -4.04 6.66 32.06 0.21 -3.83 16 12 C 0.15 5.23 3.24 46.18 0.15 5.38 16 13 H 0.10 3.43 7.69 -2.39 -0.02 3.41 16 14 N -0.71 -22.67 5.11 -440.52 -2.25 -24.92 16 15 C 0.54 17.67 7.57 86.57 0.66 18.33 16 16 O -0.58 -22.24 13.13 -4.08 -0.05 -22.30 16 17 C -0.25 -6.26 9.63 23.43 0.23 -6.03 16 18 C -0.01 -0.32 5.35 -17.25 -0.09 -0.41 16 19 C -0.11 -2.86 5.21 30.25 0.16 -2.70 16 20 C -0.12 -2.38 5.95 30.80 0.18 -2.20 16 21 C -0.12 -1.73 5.81 30.56 0.18 -1.55 16 22 C -0.12 -1.56 5.94 30.66 0.18 -1.38 16 23 C -0.09 -1.29 6.04 30.11 0.18 -1.11 16 24 C 0.13 5.85 6.98 86.73 0.61 6.46 16 25 H 0.26 15.86 5.93 -92.70 -0.55 15.31 16 26 H 0.01 0.68 6.79 -2.39 -0.02 0.66 16 27 H 0.03 1.30 7.87 -2.39 -0.02 1.29 16 28 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 29 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.41 11.64 8.61 -92.70 -0.80 10.84 16 31 H 0.15 2.95 7.99 -2.91 -0.02 2.92 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.51 5.13 -2.39 -0.01 2.50 16 34 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.07 7.94 -2.39 -0.02 1.05 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.00 0.04 8.04 -2.38 -0.02 0.02 16 Total: -1.00 -73.20 338.02 2.53 -70.67 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.41 Total: 21.14 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.37 Total: -5.83 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -4.26 Total: -117.89 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.06 Total: 54.21 kcal Total: -73.20 2.53 -70.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010331757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.183 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds