Wall clock time and date at job start Mon Mar 30 2020 23:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48498 * 109.47244 * 270.00096 * 3 2 1 5 5 H 1.48500 * 109.46885 * 30.00063 * 3 2 1 6 6 H 1.48496 * 109.47319 * 149.99759 * 3 2 1 7 7 C 1.38821 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65157 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27531 * 178.90454 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.34774 * 119.99806 * 155.00501 * 14 12 11 16 16 O 1.21282 * 120.00225 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99807 * 180.02562 * 15 14 12 18 18 C 1.50704 * 109.47236 * 179.97438 * 17 15 14 19 19 C 1.29434 * 117.96123 * 94.73285 * 18 17 15 20 20 C 1.50071 * 124.07703 * 180.23758 * 19 18 17 21 21 C 1.53029 * 110.20029 * 343.32311 * 20 19 18 22 22 C 1.53387 * 108.43759 * 49.24272 * 21 20 19 23 23 C 1.50071 * 117.95809 * 275.00141 * 18 17 15 24 24 C 1.47431 * 125.64700 * 179.97438 * 9 7 2 25 25 H 0.96994 * 119.99831 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.88251 * 59.48195 * 10 9 7 27 27 H 1.09004 * 109.88394 * 298.32108 * 10 9 7 28 28 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 29 29 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 30 30 H 0.96996 * 119.99506 * 335.00056 * 14 12 11 31 31 H 1.08994 * 109.47044 * 299.99727 * 17 15 14 32 32 H 1.08998 * 109.47068 * 59.99941 * 17 15 14 33 33 H 1.07998 * 117.96615 * 0.47207 * 19 18 17 34 34 H 1.08996 * 109.48527 * 223.00232 * 20 19 18 35 35 H 1.08995 * 109.06317 * 103.37508 * 20 19 18 36 36 H 1.08996 * 109.63664 * 289.56323 * 21 20 19 37 37 H 1.08998 * 109.64224 * 168.93312 * 21 20 19 38 38 H 1.08997 * 109.64247 * 172.88283 * 22 21 20 39 39 H 1.08996 * 109.64487 * 52.25417 * 22 21 20 40 40 H 1.08996 * 109.35783 * 283.04872 * 23 18 17 41 41 H 1.08996 * 109.36464 * 42.63833 * 23 18 17 42 42 H 1.08999 * 110.36190 * 323.00007 * 24 9 7 43 43 H 1.08999 * 110.36356 * 85.32528 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0287 12 6 0.8492 -4.6593 -0.6160 13 1 0.8530 -4.5978 -1.7043 14 7 1.0226 -6.0439 -0.1697 15 6 1.7492 -6.9045 -0.9099 16 8 2.2592 -6.5328 -1.9456 17 6 1.9271 -8.3289 -0.4511 18 6 2.7736 -9.0761 -1.4492 19 6 4.0465 -9.1539 -1.2277 20 6 5.0157 -9.8583 -2.1314 21 6 4.2666 -10.7928 -3.0840 22 6 3.1155 -10.0091 -3.7270 23 6 2.0891 -9.6784 -2.6412 24 6 1.9334 -3.7312 -0.0016 25 1 -0.4849 0.8400 0.0004 26 1 -0.5576 -2.0513 -0.8836 27 1 -0.5543 -2.0854 0.9018 28 1 -0.6317 -4.4190 0.9783 29 1 -1.3005 -4.2505 -0.6765 30 1 0.6145 -6.3412 0.6585 31 1 2.4184 -8.3385 0.5218 32 1 0.9520 -8.8091 -0.3706 33 1 4.4348 -8.6860 -0.3352 34 1 5.7158 -10.4394 -1.5314 35 1 5.5654 -9.1167 -2.7110 36 1 3.8668 -11.6400 -2.5268 37 1 4.9462 -11.1477 -3.8588 38 1 2.6467 -10.6160 -4.5015 39 1 3.4987 -9.0862 -4.1622 40 1 1.5752 -10.5911 -2.3398 41 1 1.3610 -8.9699 -3.0361 42 1 2.8328 -3.7400 -0.6173 43 1 2.1665 -4.0429 1.0165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010385706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:49 Heat of formation + Delta-G solvation = -15.199922 kcal Electronic energy + Delta-G solvation = -21603.589542 eV Core-core repulsion = 18455.719266 eV Total energy + Delta-G solvation = -3147.870276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87679 -38.40225 -37.06892 -33.94793 -32.98008 -31.79647 -30.84056 -29.22264 -27.96204 -26.49161 -24.37337 -23.36227 -22.02527 -20.55425 -20.30958 -19.82557 -17.65614 -17.16470 -16.64705 -16.06863 -15.44198 -15.11641 -14.63774 -14.47028 -14.09224 -13.91614 -13.56637 -13.44155 -12.97741 -12.63159 -12.40543 -12.32624 -12.27802 -12.14576 -11.82092 -11.69852 -10.98628 -10.91580 -10.87471 -10.73948 -10.58139 -10.35772 -10.31256 -10.08933 -9.89181 -9.72757 -9.60570 -8.79902 -8.68131 -8.57354 -6.82628 -5.70212 -3.03638 2.14471 2.86725 3.42192 3.46535 3.48416 3.53420 4.47735 4.52784 4.58172 4.79535 4.96889 5.04720 5.12354 5.24800 5.32359 5.34127 5.46088 5.47022 5.48570 5.53093 5.63268 5.70076 5.76784 5.80744 5.81953 5.84201 5.96657 6.05998 6.21733 6.22493 6.34775 6.43511 6.57037 6.62966 6.72134 6.94942 7.01646 7.55015 7.58951 7.76167 7.84097 8.26045 8.49336 9.23198 9.83091 10.48288 11.41769 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.003250 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.814239 B = 8613.437749 C = 9074.692674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.095 0.905 14 N -0.720 5.720 15 C 0.511 3.489 16 O -0.533 6.533 17 C -0.110 4.110 18 C -0.099 4.099 19 C -0.149 4.149 20 C -0.088 4.088 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.079 4.079 24 C 0.130 3.870 25 H 0.252 0.748 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 -22.352 -1.245 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.113 0.887 14 N -0.370 5.370 15 C 0.296 3.704 16 O -0.409 6.409 17 C -0.150 4.150 18 C -0.099 4.099 19 C -0.167 4.167 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.116 4.116 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.230 0.770 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.946 -21.828 -1.993 22.116 hybrid contribution 0.175 0.901 0.596 1.095 sum 3.121 -20.927 -1.397 21.204 Atomic orbital electron populations 1.69947 1.04881 1.25055 1.57272 1.24806 0.95758 0.97682 1.02258 0.86090 0.78561 0.83347 0.77613 1.21550 1.21670 1.20687 1.19080 0.90504 0.82295 1.43617 0.90400 1.44391 1.01657 0.99817 1.87234 1.21142 0.84521 0.87489 1.01420 1.23175 0.95976 1.00013 0.99673 1.22360 0.96722 0.78849 0.99931 0.88659 1.46040 1.53436 1.11479 1.26080 1.20550 0.78367 0.87127 0.84326 1.90718 1.47424 1.78742 1.23994 1.20869 1.01959 0.92737 0.99482 1.20266 0.94557 0.98767 0.96353 1.21852 0.94112 1.00456 1.00272 1.20406 0.97107 0.98065 0.96883 1.21597 0.97554 0.98012 0.98511 1.21577 0.96206 1.00491 0.97392 1.20327 0.97918 0.99873 0.93433 1.21895 0.94839 0.86167 0.96857 0.93744 0.93276 0.93612 0.92113 0.91720 0.77000 0.88607 0.88619 0.88120 0.91340 0.90870 0.91943 0.91926 0.91922 0.91360 0.91352 0.90889 0.94037 0.96377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.40 10.31 55.49 0.57 -26.83 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.91 3.40 -169.77 -0.58 -16.48 16 10 C 0.18 4.36 5.37 -3.07 -0.02 4.35 16 11 C -0.15 -2.72 6.58 -24.90 -0.16 -2.88 16 12 C 0.13 2.34 3.45 -65.52 -0.23 2.11 16 13 H 0.10 1.97 7.54 -51.93 -0.39 1.58 16 14 N -0.72 -10.25 5.21 -51.48 -0.27 -10.52 16 15 C 0.51 7.51 7.82 -10.99 -0.09 7.43 16 16 O -0.53 -10.20 15.67 5.56 0.09 -10.11 16 17 C -0.11 -1.14 5.71 -29.03 -0.17 -1.31 16 18 C -0.10 -1.11 4.33 -100.93 -0.44 -1.55 16 19 C -0.15 -1.64 9.37 -35.90 -0.34 -1.98 16 20 C -0.09 -0.83 6.11 -28.17 -0.17 -1.00 16 21 C -0.12 -1.01 6.01 -26.52 -0.16 -1.17 16 22 C -0.12 -1.16 6.01 -26.52 -0.16 -1.31 16 23 C -0.08 -0.81 5.80 -28.17 -0.16 -0.97 16 24 C 0.13 2.86 6.95 -2.27 -0.02 2.84 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 27 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 28 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.40 4.35 8.57 -40.82 -0.35 4.00 16 31 H 0.10 0.82 7.80 -51.93 -0.41 0.42 16 32 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.10 1.08 7.74 -52.49 -0.41 0.67 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -33.07 343.07 -9.75 -42.81 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.36 Total: 0.94 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.35 Total: -2.47 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.27 Total: -53.83 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.07 -9.75 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010385706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.613 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds