Wall clock time and date at job start Mon Mar 30 2020 23:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48498 * 109.47244 * 270.00096 * 3 2 1 5 5 H 1.48500 * 109.46885 * 30.00063 * 3 2 1 6 6 H 1.48496 * 109.47319 * 149.99759 * 3 2 1 7 7 C 1.38821 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65157 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27531 * 178.90454 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09001 * 111.00741 * 277.51995 * 12 11 10 14 14 N 1.46506 * 111.00374 * 153.66359 * 12 11 10 15 15 C 1.34774 * 119.99806 * 155.00501 * 14 12 11 16 16 O 1.21282 * 120.00225 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99807 * 180.02562 * 15 14 12 18 18 C 1.50704 * 109.47236 * 179.97438 * 17 15 14 19 19 C 1.29434 * 117.96123 * 94.73285 * 18 17 15 20 20 C 1.50071 * 124.07703 * 180.23758 * 19 18 17 21 21 C 1.53029 * 110.20029 * 343.32311 * 20 19 18 22 22 C 1.53387 * 108.43759 * 49.24272 * 21 20 19 23 23 C 1.50071 * 117.95809 * 275.00141 * 18 17 15 24 24 C 1.47431 * 125.64700 * 179.97438 * 9 7 2 25 25 H 0.96994 * 119.99831 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.88251 * 59.48195 * 10 9 7 27 27 H 1.09004 * 109.88394 * 298.32108 * 10 9 7 28 28 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 29 29 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 30 30 H 0.96996 * 119.99506 * 335.00056 * 14 12 11 31 31 H 1.08994 * 109.47044 * 299.99727 * 17 15 14 32 32 H 1.08998 * 109.47068 * 59.99941 * 17 15 14 33 33 H 1.07998 * 117.96615 * 0.47207 * 19 18 17 34 34 H 1.08996 * 109.48527 * 223.00232 * 20 19 18 35 35 H 1.08995 * 109.06317 * 103.37508 * 20 19 18 36 36 H 1.08996 * 109.63664 * 289.56323 * 21 20 19 37 37 H 1.08998 * 109.64224 * 168.93312 * 21 20 19 38 38 H 1.08997 * 109.64247 * 172.88283 * 22 21 20 39 39 H 1.08996 * 109.64487 * 52.25417 * 22 21 20 40 40 H 1.08996 * 109.35783 * 283.04872 * 23 18 17 41 41 H 1.08996 * 109.36464 * 42.63833 * 23 18 17 42 42 H 1.08999 * 110.36190 * 323.00007 * 24 9 7 43 43 H 1.08999 * 110.36356 * 85.32528 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0287 12 6 0.8492 -4.6593 -0.6160 13 1 0.8530 -4.5978 -1.7043 14 7 1.0226 -6.0439 -0.1697 15 6 1.7492 -6.9045 -0.9099 16 8 2.2592 -6.5328 -1.9456 17 6 1.9271 -8.3289 -0.4511 18 6 2.7736 -9.0761 -1.4492 19 6 4.0465 -9.1539 -1.2277 20 6 5.0157 -9.8583 -2.1314 21 6 4.2666 -10.7928 -3.0840 22 6 3.1155 -10.0091 -3.7270 23 6 2.0891 -9.6784 -2.6412 24 6 1.9334 -3.7312 -0.0016 25 1 -0.4849 0.8400 0.0004 26 1 -0.5576 -2.0513 -0.8836 27 1 -0.5543 -2.0854 0.9018 28 1 -0.6317 -4.4190 0.9783 29 1 -1.3005 -4.2505 -0.6765 30 1 0.6145 -6.3412 0.6585 31 1 2.4184 -8.3385 0.5218 32 1 0.9520 -8.8091 -0.3706 33 1 4.4348 -8.6860 -0.3352 34 1 5.7158 -10.4394 -1.5314 35 1 5.5654 -9.1167 -2.7110 36 1 3.8668 -11.6400 -2.5268 37 1 4.9462 -11.1477 -3.8588 38 1 2.6467 -10.6160 -4.5015 39 1 3.4987 -9.0862 -4.1622 40 1 1.5752 -10.5911 -2.3398 41 1 1.3610 -8.9699 -3.0361 42 1 2.8328 -3.7400 -0.6173 43 1 2.1665 -4.0429 1.0165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010385706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:48 Heat of formation + Delta-G solvation = -35.949089 kcal Electronic energy + Delta-G solvation = -21604.489294 eV Core-core repulsion = 18455.719266 eV Total energy + Delta-G solvation = -3148.770028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.05314 -39.46946 -38.59583 -35.57840 -34.00633 -33.49734 -31.60160 -31.06096 -29.32163 -27.88595 -26.29774 -24.14587 -22.96818 -22.14786 -21.82677 -21.27755 -19.03882 -18.45404 -17.96555 -17.35910 -16.74542 -16.42715 -16.22744 -15.83723 -15.44991 -14.89805 -14.71613 -14.43825 -14.38158 -14.15099 -13.92528 -13.71722 -13.45460 -13.09443 -12.98337 -12.97302 -12.78145 -12.57006 -12.36661 -12.12652 -12.05063 -11.83652 -11.64346 -11.60259 -11.31282 -11.07812 -10.88672 -10.74423 -10.05846 -9.62523 -8.94585 -7.88896 -5.25286 1.28362 1.43863 1.46440 1.55006 1.71109 2.30598 2.50457 3.29609 3.66617 3.68222 3.77173 3.83213 4.03169 4.06725 4.10776 4.21097 4.32282 4.38520 4.49958 4.57854 4.61018 4.71153 4.72772 4.77241 4.79211 4.84728 4.96453 5.01267 5.05777 5.09567 5.12096 5.21664 5.34544 5.39561 5.48770 5.56007 5.62965 5.71114 5.78518 6.14023 6.16125 6.66120 7.06741 7.36147 7.72106 8.35623 9.21215 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.003250 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.814239 B = 8613.437749 C = 9074.692674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.981 3.019 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.627 5.627 10 C 0.184 3.816 11 C -0.127 4.127 12 C 0.146 3.854 13 H 0.070 0.930 14 N -0.705 5.705 15 C 0.508 3.492 16 O -0.583 6.583 17 C -0.101 4.101 18 C -0.114 4.114 19 C -0.159 4.159 20 C -0.092 4.092 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.080 4.080 24 C 0.129 3.871 25 H 0.249 0.751 26 H 0.012 0.988 27 H 0.018 0.982 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.418 0.582 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -24.601 -0.213 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.059 3.941 11 C -0.166 4.166 12 C 0.039 3.961 13 H 0.088 0.912 14 N -0.357 5.357 15 C 0.297 3.703 16 O -0.462 6.462 17 C -0.140 4.140 18 C -0.115 4.115 19 C -0.177 4.177 20 C -0.128 4.128 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.117 4.117 24 C 0.002 3.998 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.036 0.964 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.255 0.745 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.974 -24.130 -0.926 24.330 hybrid contribution 0.212 1.583 0.257 1.618 sum 3.186 -22.547 -0.669 22.781 Atomic orbital electron populations 1.70158 1.06171 1.25494 1.57886 1.25665 0.96740 1.00977 1.02213 0.85051 0.77678 0.78915 0.77512 1.21339 1.21491 1.19457 1.19429 0.90898 0.83814 1.43691 0.90544 1.44685 1.02747 1.00758 1.87177 1.20946 0.83391 0.91515 0.98295 1.22983 0.96329 0.95151 1.02137 1.21810 0.95351 0.80678 0.98264 0.91181 1.45809 1.53515 1.09447 1.26948 1.21396 0.76912 0.88661 0.83360 1.90711 1.49310 1.79863 1.26295 1.20908 1.03897 0.89184 1.00008 1.20504 0.94947 0.99093 0.96932 1.22085 0.94465 1.00501 1.00631 1.20469 0.97204 0.98146 0.97024 1.21586 0.97141 0.97841 0.98623 1.21592 0.96785 0.99761 0.97782 1.20359 0.97683 1.00340 0.93270 1.22010 0.95106 0.85350 0.97329 0.94158 0.96991 0.96409 0.88880 0.89437 0.74479 0.86197 0.85430 0.88113 0.89663 0.92114 0.90678 0.90816 0.90471 0.94003 0.89051 0.92732 0.96102 0.94974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.78 10.31 21.65 0.22 -57.55 16 2 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 3 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.25 -14.67 10.28 84.04 0.86 -13.80 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -33.73 3.40 -691.03 -2.35 -36.08 16 10 C 0.18 9.12 5.37 86.73 0.47 9.59 16 11 C -0.13 -4.42 6.58 31.78 0.21 -4.21 16 12 C 0.15 5.26 3.45 46.55 0.16 5.42 16 13 H 0.07 2.93 7.54 -2.39 -0.02 2.91 16 14 N -0.70 -18.37 5.21 -435.17 -2.27 -20.64 16 15 C 0.51 14.10 7.82 87.66 0.69 14.78 16 16 O -0.58 -22.36 15.67 -3.03 -0.05 -22.41 16 17 C -0.10 -1.77 5.71 29.10 0.17 -1.61 16 18 C -0.11 -2.35 4.33 -15.09 -0.07 -2.41 16 19 C -0.16 -3.26 9.37 27.05 0.25 -3.01 16 20 C -0.09 -1.61 6.11 29.66 0.18 -1.43 16 21 C -0.11 -1.73 6.01 30.73 0.18 -1.55 16 22 C -0.12 -2.24 6.01 30.73 0.18 -2.05 16 23 C -0.08 -1.51 5.80 29.66 0.17 -1.34 16 24 C 0.13 5.69 6.95 87.02 0.61 6.30 16 25 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 27 H 0.02 0.97 7.51 -2.38 -0.02 0.95 16 28 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.42 7.51 8.57 -92.71 -0.79 6.71 16 31 H 0.12 1.58 7.80 -2.39 -0.02 1.57 16 32 H 0.13 1.48 8.11 -2.39 -0.02 1.46 16 33 H 0.10 2.00 7.74 -2.91 -0.02 1.98 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.04 343.07 2.31 -72.73 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.19 Total: 13.53 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.53 Total: 1.47 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.39 Total: -114.27 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.41 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.04 2.31 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010385706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.785 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds