Wall clock time and date at job start Tue Mar 31 2020 00:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99747 * 2 1 4 4 H 1.48497 * 109.47288 * 274.98578 * 3 2 1 5 5 H 1.48498 * 109.47343 * 34.98692 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.98800 * 3 2 1 7 7 C 1.38813 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99672 * 187.05783 * 7 2 1 9 9 N 1.36936 * 119.99748 * 7.05042 * 7 2 1 10 10 C 1.47018 * 125.65214 * 354.79574 * 9 7 2 11 11 C 1.54319 * 107.27231 * 178.97195 * 10 9 7 12 12 C 1.55151 * 102.94348 * 337.80721 * 11 10 9 13 13 H 1.08999 * 111.00632 * 277.39019 * 12 11 10 14 14 N 1.46506 * 111.00761 * 153.57496 * 12 11 10 15 15 C 1.34773 * 119.99986 * 158.18050 * 14 12 11 16 16 O 1.21275 * 120.00557 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99505 * 180.02562 * 15 14 12 18 18 H 1.08998 * 115.57438 * 325.85057 * 17 15 14 19 19 C 1.52309 * 117.53659 * 111.82001 * 17 15 14 20 20 H 1.08998 * 115.91097 * 0.84636 * 19 17 15 21 21 C 1.52070 * 119.83477 * 217.19537 * 19 17 15 22 22 C 1.52873 * 110.51221 * 310.44714 * 21 19 17 23 23 C 1.53266 * 108.46572 * 305.07481 * 22 21 19 24 24 C 1.52882 * 108.59404 * 74.63638 * 23 22 21 25 25 C 1.52074 * 60.63586 * 107.37103 * 19 17 15 26 26 H 1.08997 * 116.53441 * 252.53604 * 25 19 17 27 27 C 1.47471 * 125.62535 * 174.79411 * 9 7 2 28 28 H 0.97005 * 120.00025 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.87756 * 59.55375 * 10 9 7 30 30 H 1.09001 * 109.88228 * 298.39272 * 10 9 7 31 31 H 1.09006 * 110.72210 * 219.44365 * 11 10 9 32 32 H 1.09000 * 110.87386 * 96.24544 * 11 10 9 33 33 H 0.97003 * 119.99179 * 338.18066 * 14 12 11 34 34 H 1.09001 * 109.26904 * 70.71565 * 21 19 17 35 35 H 1.09004 * 109.26524 * 190.21681 * 21 19 17 36 36 H 1.08992 * 109.61804 * 64.84739 * 22 21 19 37 37 H 1.09009 * 109.61475 * 185.19987 * 22 21 19 38 38 H 1.09000 * 109.72443 * 314.83777 * 23 22 21 39 39 H 1.09003 * 109.50089 * 194.29832 * 23 22 21 40 40 H 1.08998 * 109.35827 * 185.13297 * 24 23 22 41 41 H 1.08997 * 109.35620 * 65.41822 * 24 23 22 42 42 H 1.08998 * 110.35105 * 85.25553 * 27 9 7 43 43 H 1.09005 * 110.40192 * 322.91598 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1144 9 7 1.3334 -2.3835 -0.1466 10 6 -0.1282 -2.5323 -0.2033 11 6 -0.4286 -4.0331 -0.3999 12 6 0.8912 -4.5748 -1.0097 13 1 0.9256 -4.3996 -2.0850 14 7 1.0647 -5.9976 -0.7065 15 6 1.8717 -6.7566 -1.4741 16 8 2.4539 -6.2620 -2.4160 17 6 2.0497 -8.2203 -1.1624 18 1 2.0249 -8.4826 -0.1048 19 6 1.4764 -9.2258 -2.1524 20 1 0.9867 -8.8039 -3.0301 21 6 0.8473 -10.5135 -1.6441 22 6 1.7770 -11.2072 -0.6483 23 6 3.1393 -11.4145 -1.3193 24 6 3.8628 -10.0690 -1.3795 25 6 2.9827 -9.0322 -2.0741 26 1 3.4497 -8.5044 -2.9056 27 6 1.9502 -3.7170 -0.2732 28 1 -0.4850 0.8401 0.0004 29 1 -0.5266 -1.9614 -1.0420 30 1 -0.5726 -2.1843 0.7292 31 1 -1.2591 -4.1727 -1.0921 32 1 -0.6389 -4.5154 0.5547 33 1 0.5988 -6.3932 0.0467 34 1 -0.0980 -10.2826 -1.1529 35 1 0.6616 -11.1800 -2.4864 36 1 1.8947 -10.5837 0.2379 37 1 1.3549 -12.1712 -0.3640 38 1 2.9972 -11.7992 -2.3292 39 1 3.7288 -12.1212 -0.7351 40 1 4.7933 -10.1838 -1.9354 41 1 4.0860 -9.7333 -0.3669 42 1 2.1574 -4.1339 0.7123 43 1 2.8661 -3.6577 -0.8613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010437757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:00 Heat of formation + Delta-G solvation = -4.897363 kcal Electronic energy + Delta-G solvation = -21709.405723 eV Core-core repulsion = 18561.982199 eV Total energy + Delta-G solvation = -3147.423524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49665 -38.70176 -37.04855 -33.95550 -33.28791 -31.81347 -31.03838 -29.17656 -27.37519 -25.55499 -24.33312 -22.81442 -22.42288 -20.39210 -20.14280 -19.76039 -18.71811 -17.46998 -16.80766 -15.97957 -15.37665 -14.82645 -14.62461 -14.46961 -14.26781 -13.99915 -13.86069 -13.56598 -12.89141 -12.58197 -12.41113 -12.38559 -12.21027 -11.98130 -11.79066 -11.39543 -11.15126 -10.96804 -10.90396 -10.72695 -10.55134 -10.34325 -10.07788 -10.04245 -9.97623 -9.87038 -9.72821 -9.47892 -8.68897 -8.55627 -6.82065 -5.71263 -3.03365 2.64185 3.31965 3.43012 3.48282 3.49929 3.68210 4.41052 4.48142 4.50445 4.54426 4.72836 4.82133 4.90988 5.10919 5.12106 5.26536 5.32267 5.33369 5.43090 5.45932 5.60070 5.66092 5.67652 5.74485 5.77972 5.83294 5.83381 5.95028 6.02554 6.03355 6.19193 6.21659 6.35517 6.43357 6.63291 6.73353 7.01559 7.53126 7.60856 7.76606 7.84408 8.26087 8.48787 9.23103 9.83230 10.48830 11.41128 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041381 B = 0.003193 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.470595 B = 8765.834235 C = 9137.201897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.094 0.906 14 N -0.713 5.713 15 C 0.539 3.461 16 O -0.542 6.542 17 C -0.188 4.188 18 H 0.121 0.879 19 C -0.112 4.112 20 H 0.103 0.897 21 C -0.090 4.090 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.091 4.091 25 C -0.112 4.112 26 H 0.115 0.885 27 C 0.130 3.870 28 H 0.252 0.748 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.397 0.603 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.019 0.981 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -23.761 -0.951 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.187 4.187 12 C 0.022 3.978 13 H 0.112 0.888 14 N -0.363 5.363 15 C 0.325 3.675 16 O -0.419 6.419 17 C -0.209 4.209 18 H 0.139 0.861 19 C -0.131 4.131 20 H 0.121 0.879 21 C -0.127 4.127 22 C -0.162 4.162 23 C -0.157 4.157 24 C -0.128 4.128 25 C -0.131 4.131 26 H 0.133 0.867 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.036 0.964 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.202 -23.137 -1.609 23.224 hybrid contribution 0.128 0.882 0.496 1.020 sum 1.330 -22.255 -1.113 22.323 Atomic orbital electron populations 1.69964 1.04919 1.25070 1.56970 1.24823 0.95734 0.97674 1.02161 0.86097 0.78686 0.83477 0.77538 1.21569 1.21773 1.20609 1.19083 0.91211 0.82460 1.42810 0.90365 1.44409 1.01622 1.00942 1.86145 1.21149 0.84642 0.87706 1.01148 1.23166 0.95705 1.00279 0.99596 1.22296 0.96832 0.78019 1.00618 0.88814 1.45958 1.47500 1.10341 1.32485 1.19669 0.78642 0.86981 0.82221 1.90698 1.47186 1.74209 1.29801 1.22509 1.09389 0.90486 0.98563 0.86076 1.21867 0.95893 0.95946 0.99407 0.87860 1.20905 0.98318 0.94388 0.99076 1.21633 0.95658 1.00454 0.98415 1.21571 0.96165 0.96867 1.01064 1.21084 0.97642 0.93631 1.00454 1.22322 0.91544 0.98848 1.00368 0.86668 1.21834 0.95014 0.86648 0.96290 0.93743 0.93102 0.93768 0.91661 0.92060 0.76916 0.91285 0.91066 0.91731 0.91703 0.91584 0.91895 0.91215 0.91396 0.96377 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 10.36 55.49 0.57 -26.81 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.56 29.56 -169.99 -5.02 17.54 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.56 10.26 -15.06 -0.15 -6.71 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 N -0.60 -15.99 3.40 -170.04 -0.58 -16.57 16 10 C 0.18 4.36 5.38 -3.07 -0.02 4.34 16 11 C -0.15 -2.72 6.59 -24.90 -0.16 -2.88 16 12 C 0.13 2.39 3.37 -65.78 -0.22 2.17 16 13 H 0.09 1.96 7.63 -51.93 -0.40 1.56 16 14 N -0.71 -10.58 5.21 -51.73 -0.27 -10.85 16 15 C 0.54 8.31 7.61 -10.98 -0.08 8.23 16 16 O -0.54 -10.67 15.95 5.56 0.09 -10.58 16 17 C -0.19 -2.10 5.32 -91.78 -0.49 -2.59 16 18 H 0.12 1.13 7.26 -51.93 -0.38 0.76 16 19 C -0.11 -1.09 5.70 -91.92 -0.52 -1.61 16 20 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 21 C -0.09 -0.65 5.92 -27.27 -0.16 -0.81 16 22 C -0.12 -0.82 5.71 -26.66 -0.15 -0.97 16 23 C -0.12 -0.81 5.91 -26.65 -0.16 -0.96 16 24 C -0.09 -0.75 5.84 -26.94 -0.16 -0.90 16 25 C -0.11 -1.18 5.71 -90.90 -0.52 -1.70 16 26 H 0.12 1.43 7.67 -51.93 -0.40 1.04 16 27 C 0.13 2.89 6.93 -2.50 -0.02 2.87 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 29 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 30 H 0.04 1.17 7.61 -51.93 -0.40 0.78 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.99 7.99 -51.93 -0.42 0.58 16 33 H 0.40 4.66 8.54 -40.82 -0.35 4.31 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.44 7.11 -51.93 -0.37 0.07 16 37 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -32.69 338.17 -10.29 -42.98 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.27 Total: 1.04 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.91 Total: -1.86 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.27 Total: -54.22 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.69 -10.29 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010437757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.087 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds