Wall clock time and date at job start Tue Mar 31 2020 00:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99747 * 2 1 4 4 H 1.48497 * 109.47288 * 274.98578 * 3 2 1 5 5 H 1.48498 * 109.47343 * 34.98692 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.98800 * 3 2 1 7 7 C 1.38813 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99672 * 187.05783 * 7 2 1 9 9 N 1.36936 * 119.99748 * 7.05042 * 7 2 1 10 10 C 1.47018 * 125.65214 * 354.79574 * 9 7 2 11 11 C 1.54319 * 107.27231 * 178.97195 * 10 9 7 12 12 C 1.55151 * 102.94348 * 337.80721 * 11 10 9 13 13 H 1.08999 * 111.00632 * 277.39019 * 12 11 10 14 14 N 1.46506 * 111.00761 * 153.57496 * 12 11 10 15 15 C 1.34773 * 119.99986 * 158.18050 * 14 12 11 16 16 O 1.21275 * 120.00557 * 359.97438 * 15 14 12 17 17 C 1.50706 * 119.99505 * 180.02562 * 15 14 12 18 18 H 1.08998 * 115.57438 * 325.85057 * 17 15 14 19 19 C 1.52309 * 117.53659 * 111.82001 * 17 15 14 20 20 H 1.08998 * 115.91097 * 0.84636 * 19 17 15 21 21 C 1.52070 * 119.83477 * 217.19537 * 19 17 15 22 22 C 1.52873 * 110.51221 * 310.44714 * 21 19 17 23 23 C 1.53266 * 108.46572 * 305.07481 * 22 21 19 24 24 C 1.52882 * 108.59404 * 74.63638 * 23 22 21 25 25 C 1.52074 * 60.63586 * 107.37103 * 19 17 15 26 26 H 1.08997 * 116.53441 * 252.53604 * 25 19 17 27 27 C 1.47471 * 125.62535 * 174.79411 * 9 7 2 28 28 H 0.97005 * 120.00025 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.87756 * 59.55375 * 10 9 7 30 30 H 1.09001 * 109.88228 * 298.39272 * 10 9 7 31 31 H 1.09006 * 110.72210 * 219.44365 * 11 10 9 32 32 H 1.09000 * 110.87386 * 96.24544 * 11 10 9 33 33 H 0.97003 * 119.99179 * 338.18066 * 14 12 11 34 34 H 1.09001 * 109.26904 * 70.71565 * 21 19 17 35 35 H 1.09004 * 109.26524 * 190.21681 * 21 19 17 36 36 H 1.08992 * 109.61804 * 64.84739 * 22 21 19 37 37 H 1.09009 * 109.61475 * 185.19987 * 22 21 19 38 38 H 1.09000 * 109.72443 * 314.83777 * 23 22 21 39 39 H 1.09003 * 109.50089 * 194.29832 * 23 22 21 40 40 H 1.08998 * 109.35827 * 185.13297 * 24 23 22 41 41 H 1.08997 * 109.35620 * 65.41822 * 24 23 22 42 42 H 1.08998 * 110.35105 * 85.25553 * 27 9 7 43 43 H 1.09005 * 110.40192 * 322.91598 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1144 9 7 1.3334 -2.3835 -0.1466 10 6 -0.1282 -2.5323 -0.2033 11 6 -0.4286 -4.0331 -0.3999 12 6 0.8912 -4.5748 -1.0097 13 1 0.9256 -4.3996 -2.0850 14 7 1.0647 -5.9976 -0.7065 15 6 1.8717 -6.7566 -1.4741 16 8 2.4539 -6.2620 -2.4160 17 6 2.0497 -8.2203 -1.1624 18 1 2.0249 -8.4826 -0.1048 19 6 1.4764 -9.2258 -2.1524 20 1 0.9867 -8.8039 -3.0301 21 6 0.8473 -10.5135 -1.6441 22 6 1.7770 -11.2072 -0.6483 23 6 3.1393 -11.4145 -1.3193 24 6 3.8628 -10.0690 -1.3795 25 6 2.9827 -9.0322 -2.0741 26 1 3.4497 -8.5044 -2.9056 27 6 1.9502 -3.7170 -0.2732 28 1 -0.4850 0.8401 0.0004 29 1 -0.5266 -1.9614 -1.0420 30 1 -0.5726 -2.1843 0.7292 31 1 -1.2591 -4.1727 -1.0921 32 1 -0.6389 -4.5154 0.5547 33 1 0.5988 -6.3932 0.0467 34 1 -0.0980 -10.2826 -1.1529 35 1 0.6616 -11.1800 -2.4864 36 1 1.8947 -10.5837 0.2379 37 1 1.3549 -12.1712 -0.3640 38 1 2.9972 -11.7992 -2.3292 39 1 3.7288 -12.1212 -0.7351 40 1 4.7933 -10.1838 -1.9354 41 1 4.0860 -9.7333 -0.3669 42 1 2.1574 -4.1339 0.7123 43 1 2.8661 -3.6577 -0.8613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010437757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:59 Heat of formation + Delta-G solvation = -25.273464 kcal Electronic energy + Delta-G solvation = -21710.289297 eV Core-core repulsion = 18561.982199 eV Total energy + Delta-G solvation = -3148.307098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51862 -39.91194 -38.64466 -35.63152 -34.07193 -33.65581 -31.64422 -31.06199 -29.07715 -26.92302 -25.88865 -23.49222 -23.38335 -22.14792 -21.71738 -21.02053 -19.51736 -18.99216 -18.30163 -17.44234 -16.72966 -16.29742 -16.13257 -15.72319 -15.43758 -14.83431 -14.77658 -14.67539 -14.40685 -14.20260 -13.99083 -13.71819 -13.21480 -13.10322 -12.98244 -12.81116 -12.70798 -12.41480 -12.17721 -12.04170 -12.01155 -11.85582 -11.71831 -11.62185 -11.17368 -10.93223 -10.77214 -10.72982 -10.56686 -10.11008 -8.95408 -7.90872 -5.25971 1.43136 1.46224 1.47465 1.54887 2.08047 2.47711 2.79323 3.28003 3.55276 3.64859 3.72155 3.78699 3.82609 4.02431 4.03394 4.12395 4.17184 4.22470 4.40806 4.42657 4.55674 4.65368 4.70230 4.71749 4.83014 4.86429 4.94364 5.00903 5.07505 5.09456 5.12649 5.30190 5.35459 5.38440 5.39293 5.47073 5.52333 5.57456 5.60665 5.69925 6.15166 6.59073 7.05745 7.27518 7.70833 8.34894 9.19805 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041381 B = 0.003193 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.470595 B = 8765.834235 C = 9137.201897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.251 4.251 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.183 3.817 11 C -0.126 4.126 12 C 0.145 3.855 13 H 0.070 0.930 14 N -0.698 5.698 15 C 0.535 3.465 16 O -0.591 6.591 17 C -0.189 4.189 18 H 0.148 0.852 19 C -0.097 4.097 20 H 0.088 0.912 21 C -0.086 4.086 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.088 4.088 25 C -0.118 4.118 26 H 0.087 0.913 27 C 0.129 3.871 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.417 0.583 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -26.198 0.117 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.165 4.165 12 C 0.039 3.961 13 H 0.088 0.912 14 N -0.349 5.349 15 C 0.324 3.676 16 O -0.471 6.471 17 C -0.209 4.209 18 H 0.166 0.834 19 C -0.116 4.116 20 H 0.107 0.893 21 C -0.123 4.123 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.126 4.126 25 C -0.137 4.137 26 H 0.105 0.895 27 C 0.002 3.998 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.944 -25.629 -0.513 25.651 hybrid contribution 0.248 1.635 0.126 1.658 sum 1.193 -23.994 -0.387 24.027 Atomic orbital electron populations 1.70165 1.06184 1.25549 1.57550 1.25670 0.96715 1.00939 1.02090 0.85056 0.77867 0.79044 0.77348 1.21456 1.21494 1.19378 1.19420 0.91558 0.83960 1.43018 0.90549 1.44697 1.02753 1.01797 1.86103 1.20956 0.83455 0.91531 0.98263 1.22980 0.95922 0.95712 1.01858 1.21779 0.95724 0.79881 0.98733 0.91213 1.45723 1.47581 1.08461 1.33152 1.20442 0.77404 0.88643 0.81159 1.90683 1.49015 1.75487 1.31958 1.22492 1.10696 0.87502 1.00248 0.83399 1.21936 0.95172 0.96371 0.98160 0.89348 1.20948 0.98664 0.92975 0.99757 1.21652 0.95175 1.01179 0.98022 1.21570 0.96451 0.95942 1.01446 1.21098 0.97400 0.93837 1.00222 1.22363 0.92483 0.99208 0.99638 0.89463 1.21929 0.95135 0.85825 0.96873 0.94102 0.96665 0.96480 0.89254 0.88840 0.74505 0.90201 0.90145 0.91615 0.90121 0.91599 0.90572 0.91110 0.91048 0.95099 0.95990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 10.36 21.65 0.22 -57.43 16 2 C -0.06 -3.56 5.48 84.86 0.46 -3.09 16 3 Si 0.98 47.05 29.56 68.60 2.03 49.08 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.80 10.26 84.03 0.86 -13.94 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.37 16 9 N -0.63 -33.93 3.40 -691.88 -2.35 -36.28 16 10 C 0.18 9.12 5.38 86.73 0.47 9.58 16 11 C -0.13 -4.43 6.59 31.78 0.21 -4.22 16 12 C 0.15 5.38 3.37 46.38 0.16 5.54 16 13 H 0.07 2.96 7.63 -2.39 -0.02 2.94 16 14 N -0.70 -19.50 5.21 -435.96 -2.27 -21.77 16 15 C 0.53 16.12 7.61 87.66 0.67 16.79 16 16 O -0.59 -23.85 15.95 -3.01 -0.05 -23.90 16 17 C -0.19 -3.87 5.32 -11.55 -0.06 -3.93 16 18 H 0.15 2.25 7.26 -2.39 -0.02 2.24 16 19 C -0.10 -1.72 5.70 -11.63 -0.07 -1.78 16 20 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 21 C -0.09 -0.97 5.92 30.25 0.18 -0.80 16 22 C -0.12 -1.16 5.71 30.64 0.17 -0.99 16 23 C -0.12 -1.23 5.91 30.64 0.18 -1.05 16 24 C -0.09 -1.29 5.84 30.46 0.18 -1.11 16 25 C -0.12 -2.38 5.71 -10.98 -0.06 -2.44 16 26 H 0.09 2.26 7.67 -2.39 -0.02 2.24 16 27 C 0.13 5.81 6.93 86.85 0.60 6.41 16 28 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 29 H 0.02 0.85 7.30 -2.39 -0.02 0.83 16 30 H 0.02 0.93 7.61 -2.39 -0.02 0.91 16 31 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 33 H 0.42 8.40 8.54 -92.71 -0.79 7.61 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.63 7.11 -2.39 -0.02 0.61 16 37 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.07 0.71 8.04 -2.39 -0.02 0.69 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 42 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -73.99 338.17 1.73 -72.26 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.20 Total: 13.07 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 3.95 Total: 4.98 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -4.40 Total: -115.48 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -73.99 1.73 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010437757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.982 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds