Wall clock time and date at job start Tue Mar 31 2020 00:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99584 * 2 1 4 4 H 1.48509 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47375 * 299.99683 * 3 2 1 6 6 H 1.48496 * 109.47606 * 59.99783 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64999 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.40412 * 178.82784 * 10 9 7 12 12 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 13 13 H 1.09001 * 111.03900 * 153.47018 * 12 11 10 14 14 N 1.46495 * 110.92661 * 277.25487 * 12 11 10 15 15 C 1.34783 * 120.00206 * 198.70979 * 14 12 11 16 16 O 1.21614 * 119.99656 * 359.97438 * 15 14 12 17 17 C 1.47097 * 120.00176 * 179.97438 * 15 14 12 18 18 C 1.31557 * 119.85371 * 179.71978 * 17 15 14 19 19 C 1.51412 * 120.29105 * 179.79705 * 18 17 15 20 20 C 1.53041 * 108.75558 * 288.80034 * 19 18 17 21 21 C 1.51779 * 110.80687 * 85.64687 * 20 19 18 22 22 C 1.51777 * 113.84468 * 293.05875 * 21 20 19 23 23 C 1.51412 * 119.85251 * 359.97438 * 17 15 14 24 24 C 1.47426 * 125.64483 * 179.97438 * 9 7 2 25 25 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.88241 * 298.32312 * 10 9 7 27 27 H 1.09000 * 109.88049 * 59.33441 * 10 9 7 28 28 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 29 29 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 30 30 H 0.96998 * 120.00258 * 18.69815 * 14 12 11 31 31 H 1.07997 * 119.85560 * 0.02562 * 18 17 15 32 32 H 1.09004 * 109.58055 * 168.98808 * 19 18 17 33 33 H 1.08998 * 109.47933 * 48.54970 * 19 18 17 34 34 H 1.08998 * 109.20588 * 325.30619 * 20 19 18 35 35 H 1.09001 * 109.20934 * 205.99383 * 20 19 18 36 36 H 1.09000 * 108.60670 * 171.92760 * 21 20 19 37 37 H 1.09008 * 108.49669 * 54.11035 * 21 20 19 38 38 H 1.08996 * 109.21497 * 306.59648 * 22 21 20 39 39 H 1.09007 * 109.20873 * 187.27813 * 22 21 20 40 40 H 1.08999 * 109.62182 * 11.29145 * 23 17 15 41 41 H 1.08997 * 109.61762 * 131.65736 * 23 17 15 42 42 H 1.08999 * 110.36956 * 323.00754 * 24 9 7 43 43 H 1.09001 * 110.36709 * 85.21947 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4518 -4.0434 -0.0302 12 6 0.8524 -4.6558 -0.6124 13 1 0.9841 -5.6852 -0.2790 14 7 0.8608 -4.5754 -2.0751 15 6 1.6896 -5.3631 -2.7887 16 8 2.4309 -6.1403 -2.2182 17 6 1.6976 -5.2827 -4.2574 18 6 2.5117 -6.0490 -4.9508 19 6 2.5249 -5.9776 -6.4632 20 6 1.2330 -6.6013 -6.9965 21 6 0.1134 -5.5770 -7.0294 22 6 -0.3340 -5.1128 -5.6554 23 6 0.7729 -4.3142 -4.9643 24 6 1.9336 -3.7311 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5549 -2.0849 0.9013 27 1 -0.5571 -2.0494 -0.8828 28 1 -0.6376 -4.4185 0.9762 29 1 -1.3011 -4.2479 -0.6822 30 1 0.2698 -3.9553 -2.5301 31 1 3.1709 -6.7346 -4.4392 32 1 3.3832 -6.5288 -6.8475 33 1 2.5851 -4.9356 -6.7774 34 1 0.9420 -7.4301 -6.3513 35 1 1.4057 -6.9765 -8.0052 36 1 -0.7421 -6.0134 -7.5448 37 1 0.4543 -4.7101 -7.5956 38 1 -0.5827 -5.9819 -5.0465 39 1 -1.2182 -4.4839 -5.7597 40 1 0.3323 -3.6320 -4.2372 41 1 1.3352 -3.7461 -5.7053 42 1 2.8336 -3.7402 -0.6143 43 1 2.1676 -4.0416 1.0189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010748124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:34 Heat of formation + Delta-G solvation = -12.109592 kcal Electronic energy + Delta-G solvation = -22371.937460 eV Core-core repulsion = 19224.201190 eV Total energy + Delta-G solvation = -3147.736269 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94709 -38.18436 -36.98977 -33.78645 -32.66207 -32.19886 -31.38046 -29.15055 -27.30259 -25.74933 -24.67179 -24.06356 -21.65043 -20.54211 -20.09680 -19.74065 -18.18937 -17.17995 -16.72762 -16.09078 -15.07868 -14.90783 -14.61424 -14.50594 -14.06305 -13.79258 -13.70576 -13.37942 -13.19914 -12.90662 -12.36743 -12.06824 -11.91208 -11.81292 -11.70313 -11.19961 -10.95415 -10.89519 -10.85736 -10.79731 -10.67374 -10.54529 -10.32708 -10.10117 -9.94868 -9.67281 -9.45240 -9.03775 -8.68126 -8.46460 -6.80477 -5.71271 -3.03431 1.58120 3.39653 3.46043 3.48160 3.54946 3.64672 4.50982 4.52738 4.70016 4.71447 4.92777 4.93924 5.12260 5.27081 5.29739 5.39253 5.48011 5.49086 5.51609 5.63555 5.68717 5.74034 5.80187 5.85845 5.92121 5.96362 6.03095 6.04898 6.21413 6.25398 6.39491 6.47495 6.53624 6.56084 6.66174 6.74708 7.11107 7.54645 7.56732 7.80476 7.97575 8.25825 8.62287 9.23232 9.83119 10.49172 11.40829 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.004610 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.484118 B = 6072.180380 C = 6516.889437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.153 4.153 12 C 0.128 3.872 13 H 0.086 0.914 14 N -0.698 5.698 15 C 0.551 3.449 16 O -0.556 6.556 17 C -0.169 4.169 18 C -0.081 4.081 19 C -0.095 4.095 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.084 4.084 24 C 0.126 3.874 25 H 0.251 0.749 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.402 0.598 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -11.875 -13.154 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.023 3.977 13 H 0.104 0.896 14 N -0.349 5.349 15 C 0.339 3.661 16 O -0.436 6.436 17 C -0.172 4.172 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.121 4.121 24 C -0.001 4.001 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.238 0.762 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.256 -12.174 -12.716 17.648 hybrid contribution 0.185 1.320 -0.062 1.334 sum -1.070 -10.854 -12.778 16.800 Atomic orbital electron populations 1.69963 1.04802 1.24799 1.57669 1.24763 0.95717 0.97536 1.02497 0.86058 0.78775 0.83851 0.77199 1.20566 1.21830 1.21783 1.19116 0.90470 0.82407 1.43069 0.90525 1.44477 1.01459 0.99914 1.87180 1.21160 0.84603 0.87913 1.01226 1.23257 0.95588 1.00076 1.00270 1.22172 0.97374 0.99137 0.79050 0.89588 1.45831 1.41170 1.40685 1.07178 1.18357 0.80049 0.80330 0.87392 1.90740 1.41094 1.39497 1.72279 1.21263 1.01499 1.01597 0.92833 1.23244 0.95359 0.96034 0.95466 1.20936 0.98232 1.02018 0.92039 1.21256 0.94345 0.98580 1.00885 1.21143 0.98186 0.99005 0.97301 1.21279 0.97705 1.00143 0.96070 1.20783 0.95742 0.96226 0.99381 1.21929 0.94874 0.86305 0.97029 0.93902 0.93785 0.93646 0.90924 0.91610 0.76206 0.85829 0.90954 0.90392 0.91729 0.91669 0.92290 0.92137 0.91772 0.91385 0.90872 0.90309 0.93937 0.95522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.31 55.49 0.57 -26.20 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 9 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 10 C 0.18 4.13 5.36 -3.07 -0.02 4.12 16 11 C -0.15 -2.76 6.54 -24.76 -0.16 -2.92 16 12 C 0.13 2.38 3.33 -65.65 -0.22 2.16 16 13 H 0.09 1.55 7.73 -51.93 -0.40 1.15 16 14 N -0.70 -12.10 5.18 -52.78 -0.27 -12.37 16 15 C 0.55 9.62 7.74 -12.66 -0.10 9.52 16 16 O -0.56 -11.37 15.93 5.27 0.08 -11.29 16 17 C -0.17 -2.34 5.10 -102.53 -0.52 -2.86 16 18 C -0.08 -1.00 8.94 -35.81 -0.32 -1.32 16 19 C -0.10 -0.87 5.61 -27.51 -0.15 -1.02 16 20 C -0.11 -0.93 5.66 -27.33 -0.15 -1.08 16 21 C -0.12 -0.98 5.27 -27.97 -0.15 -1.12 16 22 C -0.11 -1.11 5.66 -27.36 -0.15 -1.26 16 23 C -0.08 -0.98 5.36 -27.54 -0.15 -1.13 16 24 C 0.13 2.78 6.93 -2.53 -0.02 2.76 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 26 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 27 H 0.05 1.16 7.37 -51.93 -0.38 0.77 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.40 6.56 6.40 -40.82 -0.26 6.30 16 31 H 0.12 1.65 7.44 -52.49 -0.39 1.26 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.70 6.74 -51.93 -0.35 0.35 16 34 H 0.06 0.58 7.86 -51.93 -0.41 0.17 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.47 7.87 -51.92 -0.41 0.06 16 38 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.92 5.99 -51.93 -0.31 0.61 16 41 H 0.08 0.86 6.76 -51.93 -0.35 0.51 16 42 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -31.63 333.75 -9.54 -41.18 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.99 Total: 3.37 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.37 Total: -0.93 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.28 Total: -54.57 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.63 -9.54 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010748124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.067 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds