Wall clock time and date at job start Tue Mar 31 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99584 * 2 1 4 4 H 1.48509 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47375 * 299.99683 * 3 2 1 6 6 H 1.48496 * 109.47606 * 59.99783 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64999 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.40412 * 178.82784 * 10 9 7 12 12 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 13 13 H 1.09001 * 111.03900 * 153.47018 * 12 11 10 14 14 N 1.46495 * 110.92661 * 277.25487 * 12 11 10 15 15 C 1.34783 * 120.00206 * 198.70979 * 14 12 11 16 16 O 1.21614 * 119.99656 * 359.97438 * 15 14 12 17 17 C 1.47097 * 120.00176 * 179.97438 * 15 14 12 18 18 C 1.31557 * 119.85371 * 179.71978 * 17 15 14 19 19 C 1.51412 * 120.29105 * 179.79705 * 18 17 15 20 20 C 1.53041 * 108.75558 * 288.80034 * 19 18 17 21 21 C 1.51779 * 110.80687 * 85.64687 * 20 19 18 22 22 C 1.51777 * 113.84468 * 293.05875 * 21 20 19 23 23 C 1.51412 * 119.85251 * 359.97438 * 17 15 14 24 24 C 1.47426 * 125.64483 * 179.97438 * 9 7 2 25 25 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.88241 * 298.32312 * 10 9 7 27 27 H 1.09000 * 109.88049 * 59.33441 * 10 9 7 28 28 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 29 29 H 1.09002 * 110.72265 * 219.52294 * 11 10 9 30 30 H 0.96998 * 120.00258 * 18.69815 * 14 12 11 31 31 H 1.07997 * 119.85560 * 0.02562 * 18 17 15 32 32 H 1.09004 * 109.58055 * 168.98808 * 19 18 17 33 33 H 1.08998 * 109.47933 * 48.54970 * 19 18 17 34 34 H 1.08998 * 109.20588 * 325.30619 * 20 19 18 35 35 H 1.09001 * 109.20934 * 205.99383 * 20 19 18 36 36 H 1.09000 * 108.60670 * 171.92760 * 21 20 19 37 37 H 1.09008 * 108.49669 * 54.11035 * 21 20 19 38 38 H 1.08996 * 109.21497 * 306.59648 * 22 21 20 39 39 H 1.09007 * 109.20873 * 187.27813 * 22 21 20 40 40 H 1.08999 * 109.62182 * 11.29145 * 23 17 15 41 41 H 1.08997 * 109.61762 * 131.65736 * 23 17 15 42 42 H 1.08999 * 110.36956 * 323.00754 * 24 9 7 43 43 H 1.09001 * 110.36709 * 85.21947 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4518 -4.0434 -0.0302 12 6 0.8524 -4.6558 -0.6124 13 1 0.9841 -5.6852 -0.2790 14 7 0.8608 -4.5754 -2.0751 15 6 1.6896 -5.3631 -2.7887 16 8 2.4309 -6.1403 -2.2182 17 6 1.6976 -5.2827 -4.2574 18 6 2.5117 -6.0490 -4.9508 19 6 2.5249 -5.9776 -6.4632 20 6 1.2330 -6.6013 -6.9965 21 6 0.1134 -5.5770 -7.0294 22 6 -0.3340 -5.1128 -5.6554 23 6 0.7729 -4.3142 -4.9643 24 6 1.9336 -3.7311 0.0005 25 1 -0.4851 0.8400 -0.0004 26 1 -0.5549 -2.0849 0.9013 27 1 -0.5571 -2.0494 -0.8828 28 1 -0.6376 -4.4185 0.9762 29 1 -1.3011 -4.2479 -0.6822 30 1 0.2698 -3.9553 -2.5301 31 1 3.1709 -6.7346 -4.4392 32 1 3.3832 -6.5288 -6.8475 33 1 2.5851 -4.9356 -6.7774 34 1 0.9420 -7.4301 -6.3513 35 1 1.4057 -6.9765 -8.0052 36 1 -0.7421 -6.0134 -7.5448 37 1 0.4543 -4.7101 -7.5956 38 1 -0.5827 -5.9819 -5.0465 39 1 -1.2182 -4.4839 -5.7597 40 1 0.3323 -3.6320 -4.2372 41 1 1.3352 -3.7461 -5.7053 42 1 2.8336 -3.7402 -0.6143 43 1 2.1676 -4.0416 1.0189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010748124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:33 Heat of formation + Delta-G solvation = -31.139050 kcal Electronic energy + Delta-G solvation = -22372.762639 eV Core-core repulsion = 19224.201190 eV Total energy + Delta-G solvation = -3148.561449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.25152 -39.39548 -38.45867 -35.48500 -33.93783 -33.32958 -32.63091 -30.98028 -29.03462 -26.81164 -26.36623 -25.14558 -22.91946 -21.96294 -21.43031 -21.12558 -19.48329 -18.75160 -18.14945 -17.54615 -16.70152 -16.15936 -15.97614 -15.82601 -15.51157 -15.27863 -14.83306 -14.50033 -14.15360 -13.97731 -13.93167 -13.79358 -13.56143 -12.92635 -12.89720 -12.83500 -12.58809 -12.29728 -12.17871 -12.01583 -11.97480 -11.83262 -11.64420 -11.57605 -11.50383 -11.31323 -10.81005 -10.73529 -10.18534 -9.87865 -8.87865 -7.86503 -5.20871 0.46405 1.44716 1.45271 1.55629 2.22433 2.34507 2.48016 3.32308 3.63848 3.65467 3.75390 3.80589 4.00393 4.06291 4.12582 4.12932 4.24329 4.28758 4.49374 4.60429 4.65415 4.70964 4.78912 4.82549 4.85992 4.89065 4.98008 4.99535 5.00770 5.24916 5.28734 5.30089 5.33664 5.42377 5.51084 5.54237 5.59504 5.64616 5.71171 5.74962 6.18634 6.60256 7.10600 7.24312 7.75329 8.39941 9.23686 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.004610 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.484118 B = 6072.180380 C = 6516.889437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.184 3.816 11 C -0.132 4.132 12 C 0.139 3.861 13 H 0.099 0.901 14 N -0.697 5.697 15 C 0.545 3.455 16 O -0.592 6.592 17 C -0.190 4.190 18 C -0.065 4.065 19 C -0.092 4.092 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.111 4.111 23 C -0.078 4.078 24 C 0.124 3.876 25 H 0.248 0.752 26 H 0.011 0.989 27 H 0.021 0.979 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.406 0.594 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.023 0.977 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -12.482 -14.998 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.803 3.197 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.059 3.941 11 C -0.171 4.171 12 C 0.033 3.967 13 H 0.117 0.883 14 N -0.347 5.347 15 C 0.336 3.664 16 O -0.475 6.475 17 C -0.193 4.193 18 C -0.085 4.085 19 C -0.129 4.129 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.003 4.003 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.039 0.961 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.244 0.756 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.041 0.959 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.487 -12.795 -14.572 19.449 hybrid contribution 0.325 1.470 0.526 1.595 sum -1.162 -11.325 -14.046 18.081 Atomic orbital electron populations 1.70152 1.05928 1.25226 1.58123 1.25521 0.96629 1.00488 1.02432 0.85070 0.77929 0.79737 0.76935 1.19766 1.21500 1.21731 1.19380 0.90646 0.83900 1.43286 0.91100 1.44703 1.02505 1.00450 1.87034 1.20956 0.83325 0.91394 0.98386 1.23121 0.96171 0.95589 1.02194 1.22018 0.96087 0.98777 0.79812 0.88307 1.45835 1.41362 1.40833 1.06688 1.18978 0.79077 0.79416 0.88969 1.90711 1.42485 1.40999 1.73337 1.21227 1.03596 1.03666 0.90765 1.23511 0.93367 0.94087 0.97531 1.21035 0.99709 1.02933 0.89234 1.21256 0.93555 0.98167 1.01800 1.21150 0.98743 0.99410 0.96293 1.21265 0.97256 0.99608 0.96717 1.20775 0.95925 0.95729 0.99118 1.22027 0.95251 0.85810 0.97191 0.94256 0.97120 0.96121 0.88941 0.88686 0.75623 0.87239 0.89247 0.89661 0.92621 0.89482 0.90992 0.91318 0.92722 0.90548 0.92302 0.89398 0.95903 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.75 10.31 21.65 0.22 -55.53 16 2 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 7 C -0.24 -13.96 10.28 84.03 0.86 -13.10 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -32.33 3.39 -691.99 -2.35 -34.68 16 10 C 0.18 8.79 5.36 86.73 0.46 9.25 16 11 C -0.13 -4.59 6.54 31.87 0.21 -4.39 16 12 C 0.14 5.08 3.33 46.47 0.15 5.24 16 13 H 0.10 3.44 7.73 -2.39 -0.02 3.42 16 14 N -0.70 -24.04 5.18 -439.14 -2.27 -26.32 16 15 C 0.55 19.12 7.74 86.57 0.67 19.79 16 16 O -0.59 -24.53 15.93 -4.07 -0.06 -24.59 16 17 C -0.19 -5.15 5.10 -17.88 -0.09 -5.24 16 18 C -0.07 -1.54 8.94 25.34 0.23 -1.31 16 19 C -0.09 -1.44 5.61 30.09 0.17 -1.27 16 20 C -0.11 -1.48 5.66 30.21 0.17 -1.31 16 21 C -0.12 -1.60 5.27 29.79 0.16 -1.44 16 22 C -0.11 -1.94 5.66 30.19 0.17 -1.77 16 23 C -0.08 -1.73 5.36 30.07 0.16 -1.57 16 24 C 0.12 5.54 6.93 86.85 0.60 6.14 16 25 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 26 H 0.01 0.57 7.51 -2.39 -0.02 0.55 16 27 H 0.02 1.07 7.37 -2.39 -0.02 1.06 16 28 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.41 13.24 6.40 -92.71 -0.59 12.64 16 31 H 0.11 2.90 7.44 -2.91 -0.02 2.88 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.27 6.74 -2.39 -0.02 1.26 16 34 H 0.05 0.86 7.86 -2.39 -0.02 0.84 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 38 H 0.05 1.06 7.85 -2.39 -0.02 1.04 16 39 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.46 5.99 -2.39 -0.01 1.44 16 41 H 0.09 1.77 6.76 -2.39 -0.02 1.75 16 42 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.45 333.75 2.36 -67.10 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.40 Total: 19.68 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 4.39 Total: 6.23 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -4.40 Total: -116.53 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -69.45 2.36 -67.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010748124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.958 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds