Wall clock time and date at job start Tue Mar 31 2020 00:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47398 * 90.00272 * 3 2 1 5 5 H 1.48504 * 109.46962 * 209.99792 * 3 2 1 6 6 H 1.48500 * 109.47439 * 329.99656 * 3 2 1 7 7 C 1.38807 * 120.00452 * 180.27372 * 2 1 3 8 8 H 1.08012 * 119.99629 * 24.23846 * 7 2 1 9 9 N 1.36934 * 120.00605 * 204.24780 * 7 2 1 10 10 C 1.47424 * 125.64535 * 12.90828 * 9 7 2 11 11 C 1.55130 * 104.72156 * 155.82192 * 10 9 7 12 12 C 1.55156 * 101.48324 * 37.29713 * 11 10 9 13 13 H 1.09000 * 110.71946 * 205.96858 * 12 11 10 14 14 N 1.46500 * 110.87212 * 82.76951 * 12 11 10 15 15 C 1.34777 * 120.00508 * 159.93598 * 14 12 11 16 16 O 1.21620 * 119.99373 * 359.97438 * 15 14 12 17 17 C 1.47096 * 120.00492 * 179.97438 * 15 14 12 18 18 C 1.31565 * 119.85509 * 179.97438 * 17 15 14 19 19 C 1.51407 * 120.29033 * 179.97438 * 18 17 15 20 20 C 1.53037 * 108.57134 * 71.57157 * 19 18 17 21 21 C 1.51780 * 110.81274 * 274.28594 * 20 19 18 22 22 C 1.51777 * 113.84276 * 66.93447 * 21 20 19 23 23 C 1.51414 * 119.85090 * 359.72665 * 17 15 14 24 24 C 1.47017 * 125.65134 * 193.22791 * 9 7 2 25 25 H 0.96996 * 119.99877 * 174.58278 * 1 2 3 26 26 H 1.08997 * 110.36983 * 274.75246 * 10 9 7 27 27 H 1.09000 * 110.36477 * 37.07515 * 10 9 7 28 28 H 1.08998 * 111.19284 * 279.19252 * 11 10 9 29 29 H 1.08999 * 110.93901 * 155.29312 * 11 10 9 30 30 H 0.97003 * 120.00045 * 339.93341 * 14 12 11 31 31 H 1.07999 * 119.85071 * 359.97438 * 18 17 15 32 32 H 1.08996 * 109.61797 * 191.29093 * 19 18 17 33 33 H 1.08998 * 109.62654 * 311.84611 * 19 18 17 34 34 H 1.09000 * 109.20947 * 34.63081 * 20 19 18 35 35 H 1.09004 * 109.21111 * 153.98400 * 20 19 18 36 36 H 1.08994 * 108.61447 * 188.07232 * 21 20 19 37 37 H 1.09009 * 108.60532 * 305.81596 * 21 20 19 38 38 H 1.09001 * 109.20598 * 53.40949 * 22 21 20 39 39 H 1.08997 * 109.21297 * 172.76391 * 22 21 20 40 40 H 1.09000 * 109.61346 * 228.15797 * 23 17 15 41 41 H 1.08999 * 109.61977 * 348.70123 * 23 17 15 42 42 H 1.09001 * 109.88097 * 300.43160 * 24 9 7 43 43 H 1.09002 * 109.88666 * 61.59761 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2020 -0.0057 8 1 1.5417 -2.0944 -0.3940 9 7 3.2890 -1.2567 0.4810 10 6 3.9516 -0.2063 1.2754 11 6 5.0527 -0.9518 2.0743 12 6 5.5318 -2.0001 1.0356 13 1 5.9522 -2.8732 1.5347 14 7 6.5069 -1.4131 0.1132 15 6 7.3368 -2.2110 -0.5876 16 8 7.2763 -3.4183 -0.4540 17 6 8.3155 -1.6216 -1.5142 18 6 9.1245 -2.4032 -2.1965 19 6 10.1352 -1.8071 -3.1534 20 6 11.2366 -1.1267 -2.3373 21 6 10.8431 0.2950 -1.9801 22 6 9.6721 0.3843 -1.0187 23 6 8.3835 -0.1184 -1.6826 24 6 4.2309 -2.3697 0.2923 25 1 -0.4850 -0.8363 -0.0793 26 1 4.3964 0.5418 0.6193 27 1 3.2396 0.2602 1.9563 28 1 4.6380 -1.4379 2.9574 29 1 5.8618 -0.2745 2.3475 30 1 6.5553 -0.4502 0.0069 31 1 9.0673 -3.4746 -2.0735 32 1 10.5690 -2.5971 -3.7664 33 1 9.6456 -1.0718 -3.7918 34 1 11.4060 -1.6928 -1.4214 35 1 12.1564 -1.1075 -2.9221 36 1 11.7024 0.7909 -1.5288 37 1 10.5817 0.8242 -2.8966 38 1 9.8838 -0.2227 -0.1384 39 1 9.5362 1.4220 -0.7143 40 1 8.3955 0.1307 -2.7437 41 1 7.5189 0.3429 -1.2054 42 1 3.8119 -3.2848 0.7110 43 1 4.4364 -2.5056 -0.7695 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010748135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:36 Heat of formation + Delta-G solvation = -10.204235 kcal Electronic energy + Delta-G solvation = -22342.348307 eV Core-core repulsion = 19194.694660 eV Total energy + Delta-G solvation = -3147.653647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15173 -38.40499 -37.28774 -34.02962 -32.79983 -32.33881 -31.68818 -29.39845 -28.00019 -25.89361 -24.61101 -23.75289 -21.79776 -20.86947 -20.62925 -19.76068 -18.40012 -17.43559 -17.20813 -16.27847 -15.26655 -15.19609 -15.04062 -14.55379 -14.26016 -13.97289 -13.85111 -13.44723 -13.31699 -13.23593 -12.98574 -12.22308 -12.09074 -11.97608 -11.86493 -11.36939 -11.21782 -11.12319 -10.98494 -10.96162 -10.92171 -10.86419 -10.68516 -10.05594 -9.69304 -9.56611 -9.24121 -9.18145 -8.77055 -8.49181 -7.05813 -6.30398 -3.18350 1.42690 3.34714 3.38219 3.43904 3.48791 3.64750 4.39728 4.57290 4.58388 4.58977 4.77057 4.79713 4.94626 5.02717 5.05336 5.13012 5.25754 5.33405 5.39678 5.45833 5.49714 5.54195 5.59591 5.61163 5.79742 5.84501 5.88046 5.90831 5.92760 6.04199 6.11016 6.17397 6.33217 6.36789 6.50309 6.51194 6.62579 6.71439 6.94502 7.69807 7.77631 8.36134 8.42097 9.06376 9.60653 10.28184 11.17708 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.004578 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.838009 B = 6115.309647 C = 6568.355337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.022 4.022 3 Si 1.067 2.933 4 H -0.294 1.294 5 H -0.289 1.289 6 H -0.299 1.299 7 C -0.325 4.325 8 H 0.075 0.925 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.138 4.138 12 C 0.131 3.869 13 H 0.093 0.907 14 N -0.709 5.709 15 C 0.552 3.448 16 O -0.549 6.549 17 C -0.174 4.174 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.084 4.084 24 C 0.127 3.873 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.399 0.601 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.680 1.355 -2.350 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.222 4.222 3 Si 0.900 3.100 4 H -0.222 1.222 5 H -0.216 1.216 6 H -0.227 1.227 7 C -0.453 4.453 8 H 0.092 0.908 9 N -0.335 5.335 10 C -0.022 4.022 11 C -0.176 4.176 12 C 0.026 3.974 13 H 0.111 0.889 14 N -0.361 5.361 15 C 0.341 3.659 16 O -0.428 6.428 17 C -0.177 4.177 18 C -0.096 4.096 19 C -0.133 4.133 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.121 4.121 24 C 0.000 4.000 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.235 0.765 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 23.319 2.130 -2.206 23.519 hybrid contribution 0.062 -1.260 -0.218 1.280 sum 23.381 0.870 -2.424 23.522 Atomic orbital electron populations 1.70893 1.05790 1.29996 1.49758 1.25876 0.96443 1.00799 0.99113 0.83805 0.74164 0.75950 0.76104 1.22183 1.21563 1.22716 1.20060 0.87158 0.96728 1.41318 0.90760 1.44822 1.11694 1.16247 1.60745 1.22073 0.94021 0.92523 0.93583 1.23086 0.98772 0.97960 0.97821 1.21982 0.88764 0.96671 0.90016 0.88891 1.45981 1.36178 1.10295 1.43605 1.18372 0.80710 0.86513 0.80333 1.90765 1.71416 1.14294 1.66370 1.21240 0.99219 0.96369 1.00893 1.23287 0.92841 1.00224 0.93201 1.20953 0.95341 1.00202 0.96816 1.21258 0.97504 0.96038 1.00299 1.21139 0.98139 0.96693 0.99692 1.21363 0.93927 1.01270 0.98682 1.20873 0.98215 0.91084 1.01953 1.21720 0.88338 0.92265 0.97643 0.92723 0.95457 0.91953 0.89618 0.90975 0.76498 0.85717 0.90813 0.90317 0.91683 0.91563 0.92212 0.92101 0.91695 0.91389 0.90173 0.91138 0.94523 0.95090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.19 13.70 55.49 0.76 -28.43 16 2 C -0.02 -0.66 5.42 -17.43 -0.09 -0.75 16 3 Si 1.07 26.50 24.69 -169.99 -4.20 22.31 16 4 H -0.29 -6.83 6.63 56.52 0.37 -6.45 16 5 H -0.29 -6.70 6.20 56.52 0.35 -6.35 16 6 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 7 C -0.33 -9.51 10.44 -15.06 -0.16 -9.67 16 8 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 9 N -0.61 -15.13 3.26 -169.94 -0.55 -15.68 16 10 C 0.10 2.18 4.68 -2.41 -0.01 2.17 16 11 C -0.14 -2.23 6.66 -24.46 -0.16 -2.40 16 12 C 0.13 2.26 3.24 -66.10 -0.21 2.05 16 13 H 0.09 1.58 7.69 -51.93 -0.40 1.18 16 14 N -0.71 -11.09 5.07 -53.21 -0.27 -11.36 16 15 C 0.55 8.88 7.74 -12.67 -0.10 8.78 16 16 O -0.55 -10.64 15.91 5.26 0.08 -10.55 16 17 C -0.17 -2.17 5.09 -102.53 -0.52 -2.69 16 18 C -0.08 -0.85 8.92 -35.81 -0.32 -1.17 16 19 C -0.10 -0.77 5.62 -27.52 -0.15 -0.93 16 20 C -0.11 -0.81 5.66 -27.33 -0.15 -0.97 16 21 C -0.12 -0.84 5.27 -27.97 -0.15 -0.99 16 22 C -0.11 -0.95 5.67 -27.13 -0.15 -1.10 16 23 C -0.08 -0.84 5.40 -27.31 -0.15 -0.99 16 24 C 0.13 2.76 6.98 -3.07 -0.02 2.74 16 25 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 26 H 0.03 0.58 5.56 -51.93 -0.29 0.29 16 27 H 0.06 1.40 6.25 -51.93 -0.32 1.08 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.40 5.54 6.41 -40.82 -0.26 5.28 16 31 H 0.13 1.53 7.44 -52.49 -0.39 1.14 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.61 6.73 -51.93 -0.35 0.26 16 34 H 0.06 0.51 7.85 -51.93 -0.41 0.11 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.40 7.88 -51.92 -0.41 -0.01 16 38 H 0.06 0.59 7.85 -51.93 -0.41 0.18 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.74 6.74 -51.93 -0.35 0.39 16 41 H 0.07 0.73 5.99 -51.93 -0.31 0.42 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -33.80 327.61 -8.53 -42.33 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.93 Total: 2.35 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.36 Total: -5.89 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.06 Total: -55.47 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.20 Total: 22.31 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.80 -8.53 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010748135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.123 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds