Wall clock time and date at job start Tue Mar 31 2020 00:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47398 * 90.00272 * 3 2 1 5 5 H 1.48504 * 109.46962 * 209.99792 * 3 2 1 6 6 H 1.48500 * 109.47439 * 329.99656 * 3 2 1 7 7 C 1.38807 * 120.00452 * 180.27372 * 2 1 3 8 8 H 1.08012 * 119.99629 * 24.23846 * 7 2 1 9 9 N 1.36934 * 120.00605 * 204.24780 * 7 2 1 10 10 C 1.47424 * 125.64535 * 12.90828 * 9 7 2 11 11 C 1.55130 * 104.72156 * 155.82192 * 10 9 7 12 12 C 1.55156 * 101.48324 * 37.29713 * 11 10 9 13 13 H 1.09000 * 110.71946 * 205.96858 * 12 11 10 14 14 N 1.46500 * 110.87212 * 82.76951 * 12 11 10 15 15 C 1.34777 * 120.00508 * 159.93598 * 14 12 11 16 16 O 1.21620 * 119.99373 * 359.97438 * 15 14 12 17 17 C 1.47096 * 120.00492 * 179.97438 * 15 14 12 18 18 C 1.31565 * 119.85509 * 179.97438 * 17 15 14 19 19 C 1.51407 * 120.29033 * 179.97438 * 18 17 15 20 20 C 1.53037 * 108.57134 * 71.57157 * 19 18 17 21 21 C 1.51780 * 110.81274 * 274.28594 * 20 19 18 22 22 C 1.51777 * 113.84276 * 66.93447 * 21 20 19 23 23 C 1.51414 * 119.85090 * 359.72665 * 17 15 14 24 24 C 1.47017 * 125.65134 * 193.22791 * 9 7 2 25 25 H 0.96996 * 119.99877 * 174.58278 * 1 2 3 26 26 H 1.08997 * 110.36983 * 274.75246 * 10 9 7 27 27 H 1.09000 * 110.36477 * 37.07515 * 10 9 7 28 28 H 1.08998 * 111.19284 * 279.19252 * 11 10 9 29 29 H 1.08999 * 110.93901 * 155.29312 * 11 10 9 30 30 H 0.97003 * 120.00045 * 339.93341 * 14 12 11 31 31 H 1.07999 * 119.85071 * 359.97438 * 18 17 15 32 32 H 1.08996 * 109.61797 * 191.29093 * 19 18 17 33 33 H 1.08998 * 109.62654 * 311.84611 * 19 18 17 34 34 H 1.09000 * 109.20947 * 34.63081 * 20 19 18 35 35 H 1.09004 * 109.21111 * 153.98400 * 20 19 18 36 36 H 1.08994 * 108.61447 * 188.07232 * 21 20 19 37 37 H 1.09009 * 108.60532 * 305.81596 * 21 20 19 38 38 H 1.09001 * 109.20598 * 53.40949 * 22 21 20 39 39 H 1.08997 * 109.21297 * 172.76391 * 22 21 20 40 40 H 1.09000 * 109.61346 * 228.15797 * 23 17 15 41 41 H 1.08999 * 109.61977 * 348.70123 * 23 17 15 42 42 H 1.09001 * 109.88097 * 300.43160 * 24 9 7 43 43 H 1.09002 * 109.88666 * 61.59761 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2020 -0.0057 8 1 1.5417 -2.0944 -0.3940 9 7 3.2890 -1.2567 0.4810 10 6 3.9516 -0.2063 1.2754 11 6 5.0527 -0.9518 2.0743 12 6 5.5318 -2.0001 1.0356 13 1 5.9522 -2.8732 1.5347 14 7 6.5069 -1.4131 0.1132 15 6 7.3368 -2.2110 -0.5876 16 8 7.2763 -3.4183 -0.4540 17 6 8.3155 -1.6216 -1.5142 18 6 9.1245 -2.4032 -2.1965 19 6 10.1352 -1.8071 -3.1534 20 6 11.2366 -1.1267 -2.3373 21 6 10.8431 0.2950 -1.9801 22 6 9.6721 0.3843 -1.0187 23 6 8.3835 -0.1184 -1.6826 24 6 4.2309 -2.3697 0.2923 25 1 -0.4850 -0.8363 -0.0793 26 1 4.3964 0.5418 0.6193 27 1 3.2396 0.2602 1.9563 28 1 4.6380 -1.4379 2.9574 29 1 5.8618 -0.2745 2.3475 30 1 6.5553 -0.4502 0.0069 31 1 9.0673 -3.4746 -2.0735 32 1 10.5690 -2.5971 -3.7664 33 1 9.6456 -1.0718 -3.7918 34 1 11.4060 -1.6928 -1.4214 35 1 12.1564 -1.1075 -2.9221 36 1 11.7024 0.7909 -1.5288 37 1 10.5817 0.8242 -2.8966 38 1 9.8838 -0.2227 -0.1384 39 1 9.5362 1.4220 -0.7143 40 1 8.3955 0.1307 -2.7437 41 1 7.5189 0.3429 -1.2054 42 1 3.8119 -3.2848 0.7110 43 1 4.4364 -2.5056 -0.7695 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010748135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:35 Heat of formation + Delta-G solvation = -33.258722 kcal Electronic energy + Delta-G solvation = -22343.348024 eV Core-core repulsion = 19194.694660 eV Total energy + Delta-G solvation = -3148.653364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35501 -39.56562 -38.57022 -35.66885 -34.18593 -33.42808 -32.73886 -31.10471 -29.63464 -26.73740 -25.98333 -25.07782 -22.92090 -22.61017 -21.43272 -21.15517 -19.73046 -19.25666 -18.19760 -17.60796 -17.02016 -16.20003 -16.08740 -15.81749 -15.61845 -15.36829 -15.11564 -14.84978 -14.47495 -14.11181 -13.94870 -13.72566 -13.67549 -13.08755 -12.93521 -12.87178 -12.65732 -12.57517 -12.37712 -12.06092 -11.79001 -11.59493 -11.56464 -11.49777 -11.31848 -11.24003 -10.86609 -10.68619 -10.27771 -9.92086 -9.17976 -8.66670 -5.48192 0.42672 1.39305 1.54617 1.71071 2.13860 2.27536 2.52804 3.04609 3.32146 3.56833 3.67712 3.75659 3.83735 3.99942 4.10578 4.12074 4.15748 4.23903 4.38105 4.47827 4.49294 4.60886 4.73493 4.76443 4.81376 4.85241 4.87593 4.91288 4.93481 4.99380 5.15310 5.25117 5.29146 5.30628 5.33805 5.47334 5.53233 5.53496 5.57468 5.66813 6.07671 6.52852 6.81019 7.18931 7.43225 8.09799 8.81407 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023827 B = 0.004578 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.838009 B = 6115.309647 C = 6568.355337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.077 4.077 3 Si 1.111 2.889 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.306 1.306 7 C -0.325 4.325 8 H 0.032 0.968 9 N -0.625 5.625 10 C 0.092 3.908 11 C -0.118 4.118 12 C 0.143 3.857 13 H 0.100 0.900 14 N -0.703 5.703 15 C 0.546 3.454 16 O -0.591 6.591 17 C -0.190 4.190 18 C -0.065 4.065 19 C -0.092 4.092 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.080 4.080 24 C 0.126 3.874 25 H 0.246 0.754 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.410 0.590 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.321 3.739 -2.050 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.270 4.270 3 Si 0.935 3.065 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.235 1.235 7 C -0.454 4.454 8 H 0.050 0.950 9 N -0.353 5.353 10 C -0.032 4.032 11 C -0.156 4.156 12 C 0.038 3.962 13 H 0.118 0.882 14 N -0.354 5.354 15 C 0.337 3.663 16 O -0.474 6.474 17 C -0.193 4.193 18 C -0.085 4.085 19 C -0.129 4.129 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.117 4.117 24 C -0.001 4.001 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.249 0.751 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 27.003 4.512 -1.887 27.442 hybrid contribution -1.099 -2.190 -0.371 2.478 sum 25.905 2.322 -2.258 26.106 Atomic orbital electron populations 1.71027 1.07130 1.29059 1.52629 1.27347 0.96322 1.04676 0.98644 0.83302 0.73864 0.71263 0.78066 1.18787 1.18663 1.23498 1.19914 0.89324 0.95391 1.40745 0.95047 1.44859 1.10912 1.18202 1.61329 1.22316 0.94941 0.92271 0.93646 1.23058 0.98226 0.97539 0.96784 1.21752 0.86811 0.97751 0.89927 0.88206 1.45901 1.35417 1.10884 1.43243 1.19026 0.80942 0.86067 0.80273 1.90741 1.72720 1.16164 1.67744 1.21242 0.99036 0.98042 1.00991 1.23521 0.92719 0.99437 0.92849 1.21035 0.94785 1.00806 0.96302 1.21258 0.97735 0.95936 0.99936 1.21152 0.98045 0.96628 0.99877 1.21353 0.93436 1.01678 0.98425 1.20913 0.99110 0.88903 1.02774 1.21782 0.90275 0.91158 0.96887 0.94501 0.93953 0.93053 0.88631 0.86390 0.75142 0.87540 0.89532 0.89396 0.92705 0.89728 0.91112 0.91218 0.92696 0.90059 0.89181 0.91451 0.95903 0.97432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.31 13.70 21.65 0.30 -62.02 16 2 C -0.08 -4.62 5.42 84.86 0.46 -4.16 16 3 Si 1.11 52.23 24.69 68.60 1.69 53.92 16 4 H -0.26 -10.99 6.63 99.48 0.66 -10.33 16 5 H -0.26 -11.00 6.20 99.48 0.62 -10.39 16 6 H -0.31 -14.74 7.11 99.48 0.71 -14.04 16 7 C -0.33 -19.66 10.44 84.03 0.88 -18.78 16 8 H 0.03 2.10 8.06 -2.90 -0.02 2.08 16 9 N -0.63 -31.17 3.26 -691.57 -2.26 -33.43 16 10 C 0.09 3.64 4.68 86.93 0.41 4.05 16 11 C -0.12 -3.39 6.66 32.06 0.21 -3.17 16 12 C 0.14 4.73 3.24 46.18 0.15 4.88 16 13 H 0.10 3.23 7.69 -2.39 -0.02 3.22 16 14 N -0.70 -20.57 5.07 -440.51 -2.24 -22.81 16 15 C 0.55 17.13 7.74 86.57 0.67 17.80 16 16 O -0.59 -23.13 15.91 -4.09 -0.07 -23.20 16 17 C -0.19 -4.45 5.09 -17.89 -0.09 -4.54 16 18 C -0.07 -1.38 8.92 25.34 0.23 -1.15 16 19 C -0.09 -1.23 5.62 30.09 0.17 -1.07 16 20 C -0.11 -1.24 5.66 30.21 0.17 -1.07 16 21 C -0.12 -1.24 5.27 29.79 0.16 -1.08 16 22 C -0.11 -1.46 5.67 30.33 0.17 -1.29 16 23 C -0.08 -1.37 5.40 30.22 0.16 -1.20 16 24 C 0.13 5.53 6.98 86.73 0.61 6.14 16 25 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 26 H 0.04 1.59 5.56 -2.39 -0.01 1.57 16 27 H 0.05 2.16 6.25 -2.39 -0.01 2.15 16 28 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.41 10.09 6.41 -92.71 -0.59 9.49 16 31 H 0.11 2.62 7.44 -2.91 -0.02 2.60 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.09 1.07 6.73 -2.39 -0.02 1.06 16 34 H 0.05 0.74 7.85 -2.39 -0.02 0.72 16 35 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.63 7.88 -2.38 -0.02 0.61 16 38 H 0.05 0.84 7.85 -2.39 -0.02 0.82 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.37 6.74 -2.39 -0.02 1.35 16 41 H 0.07 1.18 5.99 -2.39 -0.01 1.17 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.01 0.37 8.04 -2.39 -0.02 0.35 16 Total: -1.00 -77.24 327.61 2.01 -75.23 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.23 Total: 16.94 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.35 Total: -4.65 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -4.20 Total: -118.25 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 1.69 Total: 53.92 kcal Total: -77.24 2.01 -75.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010748135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.971 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds