Wall clock time and date at job start Tue Mar 31 2020 00:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48502 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47352 * 299.99748 * 3 2 1 6 6 H 1.48498 * 109.47093 * 60.00266 * 3 2 1 7 7 C 1.38811 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00321 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.47435 * 125.64654 * 0.04364 * 9 7 2 11 11 C 1.54904 * 104.83391 * 204.09153 * 10 9 7 12 12 C 1.55164 * 101.58098 * 322.99259 * 11 10 9 13 13 H 1.09002 * 110.72127 * 153.86399 * 12 11 10 14 14 N 1.46502 * 110.86896 * 277.06824 * 12 11 10 15 15 C 1.34779 * 119.99434 * 202.45271 * 14 12 11 16 16 O 1.21280 * 120.00286 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99862 * 179.97438 * 15 14 12 18 18 C 1.52993 * 109.47347 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.35722 * 54.72298 * 18 17 15 20 20 C 1.50065 * 109.36060 * 295.00406 * 18 17 15 21 21 C 1.29446 * 124.07504 * 222.68485 * 20 18 17 22 22 C 1.50068 * 124.07667 * 0.44354 * 21 20 18 23 23 C 1.53028 * 110.14373 * 342.86772 * 22 21 20 24 24 C 1.53023 * 109.35930 * 174.30840 * 18 17 15 25 25 C 1.47022 * 125.65256 * 179.97438 * 9 7 2 26 26 H 0.96999 * 119.99318 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.36223 * 322.93371 * 10 9 7 28 28 H 1.09002 * 110.36419 * 85.14194 * 10 9 7 29 29 H 1.08995 * 111.00398 * 204.91709 * 11 10 9 30 30 H 1.09001 * 111.00339 * 81.06166 * 11 10 9 31 31 H 0.96999 * 120.00512 * 22.45422 * 14 12 11 32 32 H 1.09002 * 109.46979 * 300.00673 * 17 15 14 33 33 H 1.09003 * 109.46856 * 60.00041 * 17 15 14 34 34 H 1.07999 * 117.96021 * 42.65299 * 20 18 17 35 35 H 1.08004 * 117.96250 * 180.46273 * 21 20 18 36 36 H 1.08995 * 109.35771 * 103.07573 * 22 21 20 37 37 H 1.08997 * 109.35792 * 222.80484 * 22 21 20 38 38 H 1.09000 * 109.63876 * 169.12074 * 23 22 21 39 39 H 1.08993 * 109.64683 * 289.53882 * 23 22 21 40 40 H 1.08991 * 109.64636 * 289.33079 * 24 18 17 41 41 H 1.09000 * 109.64081 * 49.96067 * 24 18 17 42 42 H 1.09002 * 109.87665 * 59.56051 * 25 9 7 43 43 H 1.08995 * 109.88258 * 298.39996 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1416 -2.5332 0.0014 11 6 -0.4019 -3.9319 0.6140 12 6 0.7783 -4.7524 0.0297 13 1 1.0238 -5.5919 0.6802 14 7 0.4689 -5.2208 -1.3235 15 6 1.1160 -6.2884 -1.8314 16 8 1.9541 -6.8616 -1.1681 17 6 0.7973 -6.7707 -3.2232 18 6 1.6657 -7.9863 -3.5531 19 1 1.5312 -8.7461 -2.7831 20 6 3.1072 -7.5712 -3.5956 21 6 3.9487 -7.9638 -4.4975 22 6 3.5981 -8.8814 -5.6320 23 6 2.2809 -9.6030 -5.3384 24 6 1.2421 -8.5599 -4.9070 25 6 1.9317 -3.7275 0.0017 26 1 -0.4849 0.8401 -0.0004 27 1 -0.5994 -1.7584 0.6163 28 1 -0.5273 -2.4854 -1.0170 29 1 -1.3591 -4.3325 0.2805 30 1 -0.3525 -3.8971 1.7023 31 1 -0.2017 -4.7626 -1.8539 32 1 -0.2550 -7.0493 -3.2791 33 1 1.0008 -5.9743 -3.9391 34 1 3.4646 -6.9029 -2.8262 35 1 4.9665 -7.6092 -4.4290 36 1 3.4951 -8.3001 -6.5482 37 1 4.3910 -9.6185 -5.7588 38 1 1.9352 -10.1144 -6.2368 39 1 2.4308 -10.3283 -4.5387 40 1 0.2644 -9.0327 -4.8150 41 1 1.1976 -7.7599 -5.6460 42 1 2.5584 -3.8507 0.8851 43 1 2.5280 -3.8647 -0.9003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014903000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:21 Heat of formation + Delta-G solvation = -13.028320 kcal Electronic energy + Delta-G solvation = -21839.660328 eV Core-core repulsion = 18691.884220 eV Total energy + Delta-G solvation = -3147.776108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.94606 -38.43176 -37.07512 -33.78552 -32.74792 -31.70047 -31.04761 -29.22958 -27.82585 -26.61976 -24.46412 -22.63446 -22.22384 -20.35430 -20.17536 -19.74347 -17.98160 -17.09419 -16.69468 -16.02441 -15.79700 -15.07704 -14.71008 -14.37359 -14.04964 -13.86614 -13.46600 -13.19615 -12.98130 -12.75434 -12.46271 -12.29149 -12.16257 -11.99094 -11.61791 -11.51603 -11.06393 -10.98647 -10.90176 -10.76764 -10.61804 -10.39582 -10.16950 -10.10348 -9.88710 -9.59804 -9.40016 -8.95735 -8.72275 -8.58026 -6.84595 -5.67442 -3.08217 2.37433 2.92505 3.38860 3.44911 3.47250 3.51117 4.48485 4.59023 4.61973 4.70982 4.95482 5.07990 5.20137 5.30616 5.37597 5.40212 5.44570 5.47990 5.50630 5.59586 5.61702 5.69325 5.77248 5.77772 5.80806 5.87650 5.97095 6.23046 6.26837 6.29816 6.38015 6.49586 6.58068 6.73011 6.76894 7.00924 7.09152 7.42237 7.61902 7.80093 7.88172 8.33529 8.54696 9.20981 9.81611 10.46132 11.36886 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.003602 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.874388 B = 7772.660320 C = 8316.062567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.153 4.153 12 C 0.130 3.870 13 H 0.087 0.913 14 N -0.712 5.712 15 C 0.511 3.489 16 O -0.546 6.546 17 C -0.135 4.135 18 C -0.042 4.042 19 H 0.087 0.913 20 C -0.131 4.131 21 C -0.175 4.175 22 C -0.089 4.089 23 C -0.119 4.119 24 C -0.116 4.116 25 C 0.128 3.872 26 H 0.251 0.749 27 H 0.108 0.892 28 H 0.010 0.990 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.030 0.970 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -16.804 -9.307 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.192 4.192 12 C 0.025 3.975 13 H 0.105 0.895 14 N -0.363 5.363 15 C 0.297 3.703 16 O -0.423 6.423 17 C -0.175 4.175 18 C -0.060 4.060 19 H 0.105 0.895 20 C -0.149 4.149 21 C -0.193 4.193 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.154 4.154 25 C 0.001 3.999 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.138 -16.979 -8.815 19.131 hybrid contribution 0.237 1.243 -0.277 1.296 sum 0.099 -15.735 -9.092 18.173 Atomic orbital electron populations 1.69794 1.04856 1.24611 1.58029 1.24773 0.95754 0.97687 1.02563 0.85990 0.78700 0.83565 0.77227 1.20543 1.21781 1.21736 1.19145 0.90582 0.82456 1.42574 0.90488 1.44532 1.01831 0.99794 1.86862 1.21944 0.84918 0.92483 0.98011 1.23329 0.95903 0.99116 1.00857 1.21968 0.96725 0.96220 0.82542 0.89488 1.46041 1.42023 1.30921 1.17276 1.20600 0.81143 0.79972 0.88542 1.90669 1.33011 1.57229 1.61439 1.21717 1.01536 0.99453 0.94781 1.19815 0.92459 0.96293 0.97444 0.89509 1.22221 0.94645 0.99684 0.98302 1.21994 0.99364 1.00737 0.97198 1.20423 0.97281 0.97607 0.97245 1.21589 0.95187 0.97787 1.01138 1.21681 0.98464 0.98661 0.96587 1.21683 0.93941 0.85923 0.98365 0.93828 0.87447 0.97168 0.91774 0.90696 0.76605 0.88880 0.88828 0.86959 0.88248 0.91262 0.91554 0.91872 0.91759 0.91638 0.91547 0.95237 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.16 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16 10 C 0.15 3.53 5.87 -2.53 -0.01 3.52 16 11 C -0.15 -2.77 6.66 -24.58 -0.16 -2.93 16 12 C 0.13 2.36 3.28 -66.09 -0.22 2.14 16 13 H 0.09 1.56 7.62 -51.93 -0.40 1.17 16 14 N -0.71 -11.10 5.11 -52.02 -0.27 -11.37 16 15 C 0.51 7.75 7.46 -10.98 -0.08 7.66 16 16 O -0.55 -10.02 13.98 5.56 0.08 -9.94 16 17 C -0.13 -1.50 5.13 -27.88 -0.14 -1.64 16 18 C -0.04 -0.47 2.11 -92.07 -0.19 -0.66 16 19 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 20 C -0.13 -1.70 8.42 -35.90 -0.30 -2.00 16 21 C -0.17 -2.00 9.80 -35.90 -0.35 -2.36 16 22 C -0.09 -0.81 6.11 -28.17 -0.17 -0.98 16 23 C -0.12 -1.01 6.01 -26.51 -0.16 -1.17 16 24 C -0.12 -1.03 5.30 -26.51 -0.14 -1.17 16 25 C 0.13 2.81 6.98 -3.06 -0.02 2.79 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.11 2.85 5.87 -51.93 -0.31 2.55 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.40 5.61 8.64 -40.82 -0.35 5.25 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 1.76 6.54 -52.49 -0.34 1.41 16 35 H 0.10 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -31.23 338.85 -9.60 -40.84 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.27 Total: 3.88 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.21 Total: -3.56 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.28 Total: -53.43 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.23 -9.60 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.807 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds