Wall clock time and date at job start Tue Mar 31 2020 00:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48502 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47352 * 299.99748 * 3 2 1 6 6 H 1.48498 * 109.47093 * 60.00266 * 3 2 1 7 7 C 1.38811 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00321 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.47435 * 125.64654 * 0.04364 * 9 7 2 11 11 C 1.54904 * 104.83391 * 204.09153 * 10 9 7 12 12 C 1.55164 * 101.58098 * 322.99259 * 11 10 9 13 13 H 1.09002 * 110.72127 * 153.86399 * 12 11 10 14 14 N 1.46502 * 110.86896 * 277.06824 * 12 11 10 15 15 C 1.34779 * 119.99434 * 202.45271 * 14 12 11 16 16 O 1.21280 * 120.00286 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99862 * 179.97438 * 15 14 12 18 18 C 1.52993 * 109.47347 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.35722 * 54.72298 * 18 17 15 20 20 C 1.50065 * 109.36060 * 295.00406 * 18 17 15 21 21 C 1.29446 * 124.07504 * 222.68485 * 20 18 17 22 22 C 1.50068 * 124.07667 * 0.44354 * 21 20 18 23 23 C 1.53028 * 110.14373 * 342.86772 * 22 21 20 24 24 C 1.53023 * 109.35930 * 174.30840 * 18 17 15 25 25 C 1.47022 * 125.65256 * 179.97438 * 9 7 2 26 26 H 0.96999 * 119.99318 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.36223 * 322.93371 * 10 9 7 28 28 H 1.09002 * 110.36419 * 85.14194 * 10 9 7 29 29 H 1.08995 * 111.00398 * 204.91709 * 11 10 9 30 30 H 1.09001 * 111.00339 * 81.06166 * 11 10 9 31 31 H 0.96999 * 120.00512 * 22.45422 * 14 12 11 32 32 H 1.09002 * 109.46979 * 300.00673 * 17 15 14 33 33 H 1.09003 * 109.46856 * 60.00041 * 17 15 14 34 34 H 1.07999 * 117.96021 * 42.65299 * 20 18 17 35 35 H 1.08004 * 117.96250 * 180.46273 * 21 20 18 36 36 H 1.08995 * 109.35771 * 103.07573 * 22 21 20 37 37 H 1.08997 * 109.35792 * 222.80484 * 22 21 20 38 38 H 1.09000 * 109.63876 * 169.12074 * 23 22 21 39 39 H 1.08993 * 109.64683 * 289.53882 * 23 22 21 40 40 H 1.08991 * 109.64636 * 289.33079 * 24 18 17 41 41 H 1.09000 * 109.64081 * 49.96067 * 24 18 17 42 42 H 1.09002 * 109.87665 * 59.56051 * 25 9 7 43 43 H 1.08995 * 109.88258 * 298.39996 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1416 -2.5332 0.0014 11 6 -0.4019 -3.9319 0.6140 12 6 0.7783 -4.7524 0.0297 13 1 1.0238 -5.5919 0.6802 14 7 0.4689 -5.2208 -1.3235 15 6 1.1160 -6.2884 -1.8314 16 8 1.9541 -6.8616 -1.1681 17 6 0.7973 -6.7707 -3.2232 18 6 1.6657 -7.9863 -3.5531 19 1 1.5312 -8.7461 -2.7831 20 6 3.1072 -7.5712 -3.5956 21 6 3.9487 -7.9638 -4.4975 22 6 3.5981 -8.8814 -5.6320 23 6 2.2809 -9.6030 -5.3384 24 6 1.2421 -8.5599 -4.9070 25 6 1.9317 -3.7275 0.0017 26 1 -0.4849 0.8401 -0.0004 27 1 -0.5994 -1.7584 0.6163 28 1 -0.5273 -2.4854 -1.0170 29 1 -1.3591 -4.3325 0.2805 30 1 -0.3525 -3.8971 1.7023 31 1 -0.2017 -4.7626 -1.8539 32 1 -0.2550 -7.0493 -3.2791 33 1 1.0008 -5.9743 -3.9391 34 1 3.4646 -6.9029 -2.8262 35 1 4.9665 -7.6092 -4.4290 36 1 3.4951 -8.3001 -6.5482 37 1 4.3910 -9.6185 -5.7588 38 1 1.9352 -10.1144 -6.2368 39 1 2.4308 -10.3283 -4.5387 40 1 0.2644 -9.0327 -4.8150 41 1 1.1976 -7.7599 -5.6460 42 1 2.5584 -3.8507 0.8851 43 1 2.5280 -3.8647 -0.9003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014903000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:20 Heat of formation + Delta-G solvation = -31.713478 kcal Electronic energy + Delta-G solvation = -21840.470578 eV Core-core repulsion = 18691.884220 eV Total energy + Delta-G solvation = -3148.586358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15409 -39.54610 -38.54263 -35.46254 -33.85224 -33.30888 -31.85270 -31.02642 -29.27492 -27.89300 -26.38683 -23.56101 -23.03206 -22.09204 -21.59833 -21.16657 -18.97906 -18.81876 -17.99788 -17.27769 -16.93388 -16.68805 -16.22877 -15.66730 -15.45761 -15.02411 -14.81020 -14.57507 -14.18092 -13.82786 -13.69702 -13.50853 -13.41548 -13.19695 -13.01366 -12.96330 -12.82585 -12.39686 -12.29898 -12.11380 -12.00608 -11.85636 -11.69765 -11.46438 -11.39686 -11.02261 -10.77548 -10.61289 -10.02690 -9.86252 -8.91246 -7.80282 -5.24094 1.42577 1.45517 1.45991 1.56507 1.72268 2.29087 2.47674 3.29719 3.64423 3.73470 3.81717 3.82798 3.93851 4.06256 4.07482 4.29993 4.31944 4.43308 4.52499 4.55402 4.63252 4.71832 4.74273 4.81873 4.85683 4.90153 4.92194 5.03643 5.04860 5.09645 5.12552 5.25478 5.42294 5.44905 5.52617 5.59722 5.64344 5.79314 5.82407 6.10867 6.30020 6.65095 7.09811 7.33794 7.75186 8.38497 9.21266 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.003602 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.874388 B = 7772.660320 C = 8316.062567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.094 0.906 14 N -0.709 5.709 15 C 0.508 3.492 16 O -0.581 6.581 17 C -0.126 4.126 18 C -0.038 4.038 19 H 0.073 0.927 20 C -0.155 4.155 21 C -0.167 4.167 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.111 4.111 25 C 0.127 3.873 26 H 0.249 0.751 27 H 0.075 0.925 28 H -0.001 1.001 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.410 0.590 32 H 0.127 0.873 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.022 0.978 43 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -18.055 -10.830 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.171 4.171 12 C 0.039 3.961 13 H 0.111 0.889 14 N -0.360 5.360 15 C 0.296 3.704 16 O -0.461 6.461 17 C -0.166 4.166 18 C -0.057 4.057 19 H 0.091 0.909 20 C -0.173 4.173 21 C -0.186 4.186 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.149 4.149 25 C 0.000 4.000 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.017 0.983 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.145 0.855 33 H 0.120 0.880 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -1.094 -18.249 -10.353 21.009 hybrid contribution 0.626 1.629 0.194 1.756 sum -0.468 -16.620 -10.158 19.484 Atomic orbital electron populations 1.70021 1.05889 1.25057 1.58298 1.25556 0.96724 1.00627 1.02433 0.85006 0.77844 0.79445 0.76981 1.19789 1.21575 1.21491 1.19417 0.90782 0.83989 1.43041 0.91091 1.44793 1.03014 1.00316 1.86779 1.21774 0.83523 0.94688 0.97072 1.23161 0.97498 0.95569 1.00832 1.21677 0.94995 0.95183 0.84243 0.88850 1.45993 1.42385 1.31167 1.16481 1.21372 0.80061 0.79162 0.89784 1.90659 1.34415 1.58269 1.62731 1.21767 1.03494 0.99576 0.91728 1.19801 0.91199 0.95922 0.98758 0.90922 1.22153 0.96384 1.00529 0.98243 1.22242 0.98858 1.00109 0.97341 1.20496 0.98275 0.97487 0.96326 1.21619 0.94610 0.97563 1.01915 1.21677 0.99451 0.98923 0.94800 1.21768 0.95297 0.85816 0.97110 0.94136 0.90678 0.98319 0.88193 0.90253 0.75456 0.85451 0.87978 0.90653 0.88712 0.90040 0.90395 0.89661 0.92399 0.89674 0.90938 0.96006 0.97395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.05 10.09 21.65 0.22 -54.83 16 2 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 3 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -32.56 3.39 -691.98 -2.35 -34.91 16 10 C 0.15 7.25 5.87 86.85 0.51 7.76 16 11 C -0.13 -4.59 6.66 31.99 0.21 -4.38 16 12 C 0.15 5.15 3.28 46.18 0.15 5.30 16 13 H 0.09 3.27 7.62 -2.39 -0.02 3.25 16 14 N -0.71 -21.30 5.11 -436.89 -2.23 -23.54 16 15 C 0.51 15.03 7.46 87.66 0.65 15.68 16 16 O -0.58 -21.59 13.98 -3.03 -0.04 -21.64 16 17 C -0.13 -2.56 5.13 29.85 0.15 -2.41 16 18 C -0.04 -0.81 2.11 -11.73 -0.02 -0.83 16 19 H 0.07 1.74 7.94 -2.39 -0.02 1.72 16 20 C -0.15 -4.06 8.42 27.03 0.23 -3.84 16 21 C -0.17 -3.76 9.80 27.03 0.27 -3.49 16 22 C -0.09 -1.42 6.11 29.66 0.18 -1.24 16 23 C -0.12 -1.68 6.01 30.74 0.18 -1.50 16 24 C -0.11 -1.63 5.30 30.74 0.16 -1.46 16 25 C 0.13 5.69 6.98 86.73 0.61 6.30 16 26 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.08 4.06 5.87 -2.39 -0.01 4.05 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.10 2.79 8.14 -2.39 -0.02 2.78 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.41 10.75 8.64 -92.71 -0.80 9.95 16 32 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 2.51 6.54 -2.91 -0.02 2.49 16 35 H 0.09 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.01 0.38 8.04 -2.39 -0.02 0.37 16 Total: -1.00 -69.52 338.85 2.42 -67.10 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.18 Total: 20.06 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 4.61 Total: -0.19 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.36 Total: -113.27 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -69.52 2.42 -67.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.387 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds