Wall clock time and date at job start Tue Mar 31 2020 00:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64675 * 359.68852 * 9 7 2 11 11 C 1.55131 * 104.71847 * 155.81671 * 10 9 7 12 12 C 1.55153 * 101.48647 * 37.29562 * 11 10 9 13 13 H 1.09000 * 110.72126 * 205.96605 * 12 11 10 14 14 N 1.46501 * 110.87349 * 82.76438 * 12 11 10 15 15 C 1.34780 * 120.00341 * 159.93470 * 14 12 11 16 16 O 1.21280 * 119.99786 * 0.02562 * 15 14 12 17 17 C 1.50699 * 119.99949 * 180.02562 * 15 14 12 18 18 C 1.52999 * 109.46972 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.35912 * 55.00091 * 18 17 15 20 20 C 1.50071 * 109.35973 * 295.27817 * 18 17 15 21 21 C 1.29440 * 124.07511 * 222.68757 * 20 18 17 22 22 C 1.50069 * 124.07558 * 0.43773 * 21 20 18 23 23 C 1.53027 * 110.15014 * 342.87477 * 22 21 20 24 24 C 1.53027 * 109.35810 * 174.71973 * 18 17 15 25 25 C 1.47026 * 125.64697 * 179.97438 * 9 7 2 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.36510 * 274.74946 * 10 9 7 28 28 H 1.09001 * 110.36249 * 37.07349 * 10 9 7 29 29 H 1.08999 * 111.19687 * 279.19300 * 11 10 9 30 30 H 1.08999 * 110.93608 * 155.29072 * 11 10 9 31 31 H 0.97001 * 119.99714 * 339.93876 * 14 12 11 32 32 H 1.09000 * 109.47155 * 299.99734 * 17 15 14 33 33 H 1.08999 * 109.47478 * 60.00065 * 17 15 14 34 34 H 1.07990 * 117.96201 * 42.65834 * 20 18 17 35 35 H 1.07997 * 117.96468 * 180.41867 * 21 20 18 36 36 H 1.09011 * 109.35536 * 103.07813 * 22 21 20 37 37 H 1.08998 * 109.35998 * 222.79915 * 22 21 20 38 38 H 1.08998 * 109.64358 * 169.11407 * 23 22 21 39 39 H 1.08999 * 109.64066 * 289.54142 * 23 22 21 40 40 H 1.08996 * 109.64188 * 289.32894 * 24 18 17 41 41 H 1.09003 * 109.63765 * 49.96477 * 24 18 17 42 42 H 1.09003 * 109.87851 * 300.43791 * 25 9 7 43 43 H 1.08997 * 109.87950 * 61.60369 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0065 11 6 -0.4016 -3.9325 -0.6105 12 6 0.7785 -4.7524 -0.0255 13 1 1.0240 -5.5924 -0.6753 14 7 0.4692 -5.2197 1.3281 15 6 1.1500 -6.2567 1.8551 16 8 2.0190 -6.8027 1.2089 17 6 0.8313 -6.7376 3.2473 18 6 1.7413 -7.9157 3.6006 19 1 2.7823 -7.6203 3.4693 20 6 1.4341 -9.0711 2.6935 21 6 1.3435 -10.3001 3.0898 22 6 1.5239 -10.7400 4.5132 23 6 2.2288 -9.6458 5.3178 24 6 1.5081 -8.3173 5.0587 25 6 1.9319 -3.7275 0.0005 26 1 -0.4850 0.8401 0.0004 27 1 -0.5228 -2.4888 1.0266 28 1 -0.6018 -1.7576 -0.6056 29 1 -0.3522 -3.8987 -1.6989 30 1 -1.3589 -4.3332 -0.2772 31 1 -0.2256 -4.7827 1.8450 32 1 0.9943 -5.9273 3.9578 33 1 -0.2101 -7.0563 3.2922 34 1 1.2783 -8.8644 1.6451 35 1 1.1243 -11.0558 2.3501 36 1 0.5482 -10.9419 4.9553 37 1 2.1262 -11.6482 4.5371 38 1 2.1844 -9.8860 6.3801 39 1 3.2695 -9.5717 5.0021 40 1 1.9110 -7.5494 5.7191 41 1 0.4399 -8.4368 5.2394 42 1 2.5579 -3.8510 -0.8833 43 1 2.5289 -3.8641 0.9022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014903002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:24 Heat of formation + Delta-G solvation = -12.606882 kcal Electronic energy + Delta-G solvation = -21772.099831 eV Core-core repulsion = 18624.341997 eV Total energy + Delta-G solvation = -3147.757833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.95133 -38.44908 -37.06586 -33.78314 -32.75523 -31.69620 -31.08057 -29.22363 -27.81676 -26.62345 -24.46184 -22.64824 -22.23802 -20.36896 -20.17687 -19.71696 -18.01282 -17.08784 -16.69097 -16.05074 -15.77004 -15.13039 -14.70668 -14.37563 -14.06044 -13.82989 -13.51192 -13.21428 -12.92722 -12.77111 -12.55092 -12.27315 -12.17065 -11.96349 -11.60766 -11.54112 -11.05916 -10.99748 -10.87151 -10.74178 -10.63411 -10.40337 -10.18089 -10.15151 -9.88820 -9.59967 -9.39846 -9.00498 -8.70981 -8.57668 -6.84244 -5.66609 -3.07724 2.32048 2.93192 3.40348 3.44447 3.45779 3.51265 4.48947 4.57363 4.61209 4.70301 4.94584 5.06500 5.19316 5.29421 5.34518 5.41020 5.44351 5.46241 5.50046 5.58259 5.59795 5.70631 5.75553 5.77489 5.80950 5.88041 5.96575 6.22352 6.25013 6.29156 6.38018 6.49303 6.58298 6.71266 6.74166 6.95668 7.09412 7.42323 7.61509 7.80272 7.88460 8.34316 8.55177 9.21490 9.82151 10.46760 11.37406 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034241 B = 0.003313 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.540102 B = 8449.779272 C = 8781.440881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.153 4.153 12 C 0.131 3.869 13 H 0.085 0.915 14 N -0.712 5.712 15 C 0.511 3.489 16 O -0.545 6.545 17 C -0.134 4.134 18 C -0.043 4.043 19 H 0.088 0.912 20 C -0.129 4.129 21 C -0.176 4.176 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.128 3.872 26 H 0.252 0.748 27 H 0.010 0.990 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -17.676 8.751 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.192 4.192 12 C 0.026 3.974 13 H 0.103 0.897 14 N -0.363 5.363 15 C 0.297 3.703 16 O -0.423 6.423 17 C -0.174 4.174 18 C -0.062 4.062 19 H 0.106 0.894 20 C -0.147 4.147 21 C -0.194 4.194 22 C -0.125 4.125 23 C -0.158 4.158 24 C -0.154 4.154 25 C 0.001 3.999 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.126 0.874 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.234 0.766 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.248 -17.829 8.264 19.691 hybrid contribution 0.138 1.107 0.209 1.135 sum -1.110 -16.722 8.473 18.779 Atomic orbital electron populations 1.69766 1.04857 1.24846 1.57898 1.24769 0.95748 0.97679 1.02536 0.86136 0.78389 0.82975 0.77919 1.21572 1.21259 1.21156 1.19054 0.90530 0.82484 1.42805 0.90593 1.44521 1.01831 0.99782 1.86877 1.22000 0.84938 0.92484 0.97924 1.23365 0.95838 0.99164 1.00849 1.21952 0.96788 0.96175 0.82475 0.89661 1.46043 1.39438 1.33415 1.17380 1.20593 0.81504 0.79656 0.88500 1.90670 1.31937 1.57209 1.62486 1.21709 1.01739 0.99244 0.94755 1.19835 1.00186 0.92680 0.93470 0.89356 1.22219 0.98496 0.93687 1.00266 1.21986 1.03695 0.96753 0.96948 1.20425 1.00429 0.98287 0.93397 1.21588 0.99791 0.94905 0.99483 1.21670 1.00860 0.97282 0.95570 1.21678 0.93921 0.85881 0.98391 0.93718 0.97177 0.87374 0.90667 0.91811 0.76637 0.88676 0.89035 0.87065 0.88341 0.91315 0.91572 0.91835 0.91684 0.91545 0.91593 0.95223 0.95722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.08 55.49 0.56 -26.05 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.49 3.39 -169.93 -0.58 -16.07 16 10 C 0.15 3.54 5.89 -2.41 -0.01 3.52 16 11 C -0.15 -2.77 6.66 -24.46 -0.16 -2.94 16 12 C 0.13 2.37 3.24 -66.10 -0.21 2.16 16 13 H 0.09 1.53 7.69 -51.93 -0.40 1.13 16 14 N -0.71 -11.11 5.12 -52.03 -0.27 -11.38 16 15 C 0.51 7.77 7.46 -10.98 -0.08 7.69 16 16 O -0.55 -10.04 14.00 5.56 0.08 -9.97 16 17 C -0.13 -1.50 5.14 -27.88 -0.14 -1.64 16 18 C -0.04 -0.49 2.12 -92.06 -0.20 -0.68 16 19 H 0.09 1.15 7.95 -51.93 -0.41 0.74 16 20 C -0.13 -1.56 8.41 -35.90 -0.30 -1.86 16 21 C -0.18 -1.85 9.80 -35.90 -0.35 -2.20 16 22 C -0.09 -0.76 6.11 -28.17 -0.17 -0.93 16 23 C -0.12 -1.01 6.01 -26.54 -0.16 -1.17 16 24 C -0.12 -1.04 5.29 -26.54 -0.14 -1.18 16 25 C 0.13 2.83 6.98 -3.06 -0.02 2.81 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.11 2.87 5.86 -51.93 -0.30 2.57 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.40 5.57 8.62 -40.82 -0.35 5.22 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.57 6.51 -52.49 -0.34 1.23 16 35 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.58 8.04 -51.93 -0.42 0.16 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -31.20 338.86 -9.60 -40.80 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.27 Total: 3.67 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.21 Total: -3.22 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.28 Total: -53.50 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.20 -9.60 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.195 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds