Wall clock time and date at job start Tue Mar 31 2020 00:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64675 * 359.68852 * 9 7 2 11 11 C 1.55131 * 104.71847 * 155.81671 * 10 9 7 12 12 C 1.55153 * 101.48647 * 37.29562 * 11 10 9 13 13 H 1.09000 * 110.72126 * 205.96605 * 12 11 10 14 14 N 1.46501 * 110.87349 * 82.76438 * 12 11 10 15 15 C 1.34780 * 120.00341 * 159.93470 * 14 12 11 16 16 O 1.21280 * 119.99786 * 0.02562 * 15 14 12 17 17 C 1.50699 * 119.99949 * 180.02562 * 15 14 12 18 18 C 1.52999 * 109.46972 * 180.02562 * 17 15 14 19 19 H 1.09001 * 109.35912 * 55.00091 * 18 17 15 20 20 C 1.50071 * 109.35973 * 295.27817 * 18 17 15 21 21 C 1.29440 * 124.07511 * 222.68757 * 20 18 17 22 22 C 1.50069 * 124.07558 * 0.43773 * 21 20 18 23 23 C 1.53027 * 110.15014 * 342.87477 * 22 21 20 24 24 C 1.53027 * 109.35810 * 174.71973 * 18 17 15 25 25 C 1.47026 * 125.64697 * 179.97438 * 9 7 2 26 26 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 27 27 H 1.08994 * 110.36510 * 274.74946 * 10 9 7 28 28 H 1.09001 * 110.36249 * 37.07349 * 10 9 7 29 29 H 1.08999 * 111.19687 * 279.19300 * 11 10 9 30 30 H 1.08999 * 110.93608 * 155.29072 * 11 10 9 31 31 H 0.97001 * 119.99714 * 339.93876 * 14 12 11 32 32 H 1.09000 * 109.47155 * 299.99734 * 17 15 14 33 33 H 1.08999 * 109.47478 * 60.00065 * 17 15 14 34 34 H 1.07990 * 117.96201 * 42.65834 * 20 18 17 35 35 H 1.07997 * 117.96468 * 180.41867 * 21 20 18 36 36 H 1.09011 * 109.35536 * 103.07813 * 22 21 20 37 37 H 1.08998 * 109.35998 * 222.79915 * 22 21 20 38 38 H 1.08998 * 109.64358 * 169.11407 * 23 22 21 39 39 H 1.08999 * 109.64066 * 289.54142 * 23 22 21 40 40 H 1.08996 * 109.64188 * 289.32894 * 24 18 17 41 41 H 1.09003 * 109.63765 * 49.96477 * 24 18 17 42 42 H 1.09003 * 109.87851 * 300.43791 * 25 9 7 43 43 H 1.08997 * 109.87950 * 61.60369 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0065 11 6 -0.4016 -3.9325 -0.6105 12 6 0.7785 -4.7524 -0.0255 13 1 1.0240 -5.5924 -0.6753 14 7 0.4692 -5.2197 1.3281 15 6 1.1500 -6.2567 1.8551 16 8 2.0190 -6.8027 1.2089 17 6 0.8313 -6.7376 3.2473 18 6 1.7413 -7.9157 3.6006 19 1 2.7823 -7.6203 3.4693 20 6 1.4341 -9.0711 2.6935 21 6 1.3435 -10.3001 3.0898 22 6 1.5239 -10.7400 4.5132 23 6 2.2288 -9.6458 5.3178 24 6 1.5081 -8.3173 5.0587 25 6 1.9319 -3.7275 0.0005 26 1 -0.4850 0.8401 0.0004 27 1 -0.5228 -2.4888 1.0266 28 1 -0.6018 -1.7576 -0.6056 29 1 -0.3522 -3.8987 -1.6989 30 1 -1.3589 -4.3332 -0.2772 31 1 -0.2256 -4.7827 1.8450 32 1 0.9943 -5.9273 3.9578 33 1 -0.2101 -7.0563 3.2922 34 1 1.2783 -8.8644 1.6451 35 1 1.1243 -11.0558 2.3501 36 1 0.5482 -10.9419 4.9553 37 1 2.1262 -11.6482 4.5371 38 1 2.1844 -9.8860 6.3801 39 1 3.2695 -9.5717 5.0021 40 1 1.9110 -7.5494 5.7191 41 1 0.4399 -8.4368 5.2394 42 1 2.5579 -3.8510 -0.8833 43 1 2.5289 -3.8641 0.9022 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014903002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:23 Heat of formation + Delta-G solvation = -31.169054 kcal Electronic energy + Delta-G solvation = -21772.904747 eV Core-core repulsion = 18624.341997 eV Total energy + Delta-G solvation = -3148.562750 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15610 -39.54362 -38.53128 -35.45968 -33.84762 -33.30074 -31.84555 -31.01646 -29.25772 -27.89073 -26.38018 -23.55485 -23.03091 -22.09599 -21.60335 -21.14746 -18.97048 -18.81214 -17.99122 -17.26260 -16.91417 -16.66665 -16.26570 -15.67718 -15.44687 -15.02130 -14.75417 -14.61711 -14.13898 -13.84575 -13.70705 -13.50116 -13.40746 -13.17644 -13.00186 -12.96384 -12.77452 -12.41290 -12.29120 -12.11226 -12.05171 -11.84761 -11.70797 -11.46800 -11.38740 -11.00940 -10.75900 -10.62089 -10.01931 -9.83849 -8.90606 -7.79054 -5.23251 1.45455 1.46027 1.48642 1.55244 1.72623 2.28862 2.48662 3.30472 3.64634 3.74716 3.79484 3.84376 3.93890 4.06798 4.08301 4.29637 4.32198 4.43354 4.53337 4.54992 4.64033 4.72864 4.73482 4.82939 4.84420 4.91127 4.92913 5.03508 5.04666 5.10605 5.12025 5.25232 5.42548 5.45790 5.51697 5.60075 5.64424 5.79795 5.85366 6.12404 6.30889 6.65104 7.10430 7.33907 7.76101 8.39440 9.21943 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034241 B = 0.003313 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.540102 B = 8449.779272 C = 8781.440881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.061 4.061 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.092 0.908 14 N -0.709 5.709 15 C 0.508 3.492 16 O -0.580 6.580 17 C -0.126 4.126 18 C -0.041 4.041 19 H 0.062 0.938 20 C -0.152 4.152 21 C -0.164 4.164 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.112 4.112 25 C 0.127 3.873 26 H 0.249 0.751 27 H -0.001 1.001 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.410 0.590 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.022 0.978 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -18.815 10.222 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.171 4.171 12 C 0.039 3.961 13 H 0.110 0.890 14 N -0.360 5.360 15 C 0.296 3.704 16 O -0.460 6.460 17 C -0.165 4.165 18 C -0.060 4.060 19 H 0.080 0.920 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.126 4.126 23 C -0.159 4.159 24 C -0.149 4.149 25 C 0.001 3.999 26 H 0.059 0.941 27 H 0.017 0.983 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.246 0.754 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -2.025 -18.989 9.751 21.442 hybrid contribution 0.418 1.403 -0.266 1.488 sum -1.608 -17.585 9.485 20.045 Atomic orbital electron populations 1.70002 1.05905 1.25212 1.58202 1.25561 0.96717 1.00655 1.02408 0.85145 0.77207 0.78874 0.78034 1.21453 1.20678 1.20551 1.19355 0.90810 0.83996 1.43238 0.91041 1.44783 1.02999 1.00313 1.86800 1.21827 0.83570 0.94655 0.97015 1.23196 0.97431 0.95646 1.00820 1.21664 0.95077 0.95148 0.84164 0.89040 1.45993 1.39835 1.33609 1.16587 1.21353 0.80488 0.78802 0.89724 1.90658 1.33449 1.58213 1.63724 1.21753 1.03150 0.99648 0.91970 1.19797 0.98654 0.92402 0.95112 0.91977 1.22102 1.00941 0.94799 0.99192 1.22241 1.01412 0.96168 0.98406 1.20499 1.01530 0.98682 0.91874 1.21617 0.99022 0.94603 1.00639 1.21662 1.01805 0.97819 0.93627 1.21761 0.95254 0.85751 0.97170 0.94121 0.98295 0.90607 0.90236 0.88276 0.75440 0.87031 0.86475 0.89783 0.87996 0.89700 0.90449 0.89840 0.92837 0.90668 0.90296 0.95993 0.97297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.06 10.08 21.65 0.22 -54.84 16 2 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 3 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.05 10.27 84.03 0.86 -13.19 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.62 -32.51 3.39 -691.55 -2.35 -34.85 16 10 C 0.15 7.24 5.89 86.93 0.51 7.75 16 11 C -0.13 -4.61 6.66 32.06 0.21 -4.39 16 12 C 0.15 5.17 3.24 46.18 0.15 5.32 16 13 H 0.09 3.20 7.69 -2.39 -0.02 3.19 16 14 N -0.71 -21.33 5.12 -436.93 -2.24 -23.56 16 15 C 0.51 15.12 7.46 87.66 0.65 15.78 16 16 O -0.58 -21.68 14.00 -3.03 -0.04 -21.73 16 17 C -0.13 -2.59 5.14 29.85 0.15 -2.44 16 18 C -0.04 -0.89 2.12 -11.73 -0.02 -0.91 16 19 H 0.06 1.65 7.95 -2.39 -0.02 1.63 16 20 C -0.15 -3.61 8.41 27.04 0.23 -3.39 16 21 C -0.16 -3.22 9.80 27.04 0.27 -2.95 16 22 C -0.09 -1.28 6.11 29.66 0.18 -1.10 16 23 C -0.12 -1.75 6.01 30.72 0.18 -1.56 16 24 C -0.11 -1.72 5.29 30.72 0.16 -1.56 16 25 C 0.13 5.71 6.98 86.73 0.61 6.31 16 26 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.08 4.10 5.86 -2.39 -0.01 4.09 16 29 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.41 10.70 8.62 -92.71 -0.80 9.90 16 32 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 2.44 6.51 -2.92 -0.02 2.42 16 35 H 0.10 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 42 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.01 0.43 8.04 -2.39 -0.02 0.41 16 Total: -1.00 -68.91 338.86 2.42 -66.49 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.18 Total: 20.00 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 4.61 Total: 0.70 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.36 Total: -113.26 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -68.91 2.42 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.322 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds