Wall clock time and date at job start Tue Mar 31 2020 00:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48500 * 109.46891 * 269.99719 * 3 2 1 5 5 H 1.48493 * 109.46900 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47075 * 149.99997 * 3 2 1 7 7 C 1.38819 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99704 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65289 * 0.02562 * 9 7 2 11 11 C 1.54319 * 107.27606 * 178.90843 * 10 9 7 12 12 C 1.55162 * 102.94003 * 337.80896 * 11 10 9 13 13 H 1.08997 * 111.00561 * 153.61090 * 12 11 10 14 14 N 1.46499 * 111.00809 * 277.42784 * 12 11 10 15 15 C 1.34777 * 120.00199 * 201.82276 * 14 12 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 12 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 H 1.09006 * 109.35341 * 304.99796 * 18 17 15 20 20 C 1.50074 * 109.35886 * 64.71820 * 18 17 15 21 21 C 1.29256 * 124.21634 * 137.49096 * 20 18 17 22 22 C 1.50067 * 124.01673 * 359.27017 * 21 20 18 23 23 C 1.53026 * 110.14995 * 17.26443 * 22 21 20 24 24 C 1.53021 * 109.36190 * 185.27493 * 18 17 15 25 25 C 1.47527 * 125.63597 * 179.97438 * 9 7 2 26 26 H 0.96999 * 120.00013 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.87607 * 59.49198 * 10 9 7 28 28 H 1.09003 * 109.88331 * 298.32830 * 10 9 7 29 29 H 1.08997 * 110.72437 * 219.44927 * 11 10 9 30 30 H 1.08998 * 110.72377 * 96.17099 * 11 10 9 31 31 H 0.97000 * 119.99484 * 21.81373 * 14 12 11 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 34 34 H 1.07997 * 117.95987 * 317.31987 * 20 18 17 35 35 H 1.07996 * 118.01622 * 179.38099 * 21 20 18 36 36 H 1.08999 * 109.35883 * 257.05188 * 22 21 20 37 37 H 1.09003 * 109.24612 * 137.39801 * 22 21 20 38 38 H 1.09002 * 109.64344 * 190.87846 * 23 22 21 39 39 H 1.08997 * 109.81882 * 70.34561 * 23 22 21 40 40 H 1.09000 * 109.64101 * 310.04375 * 24 18 17 41 41 H 1.09002 * 109.63911 * 70.66851 * 24 18 17 42 42 H 1.09002 * 110.37175 * 85.33707 * 25 9 7 43 43 H 1.09000 * 110.41141 * 322.99164 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4486 -4.0441 -0.0282 12 6 0.8522 -4.6559 -0.6122 13 1 0.9835 -5.6854 -0.2793 14 7 0.8601 -4.5749 -2.0749 15 6 1.6419 -5.4064 -2.7917 16 8 2.3393 -6.2214 -2.2257 17 6 1.6546 -5.3189 -4.2961 18 6 2.6232 -6.3606 -4.8595 19 1 3.6052 -6.2229 -4.4067 20 6 2.1161 -7.7362 -4.5388 21 6 2.1230 -8.7256 -5.3705 22 6 2.6259 -8.6329 -6.7814 23 6 3.4946 -7.3845 -6.9503 24 6 2.7342 -6.1829 -6.3753 25 6 1.9340 -3.7320 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5569 -2.0518 -0.8843 28 1 -0.5551 -2.0848 0.9012 29 1 -1.2981 -4.2512 -0.6789 30 1 -0.6325 -4.4185 0.9788 31 1 0.3025 -3.9228 -2.5275 32 1 0.6523 -5.5099 -4.6797 33 1 1.9759 -4.3225 -4.5994 34 1 1.7221 -7.9126 -3.5488 35 1 1.7421 -9.6771 -5.0301 36 1 1.7782 -8.5783 -7.4643 37 1 3.2182 -9.5188 -7.0107 38 1 3.6956 -7.2184 -8.0087 39 1 4.4350 -7.5133 -6.4146 40 1 1.7369 -6.1369 -6.8127 41 1 3.2778 -5.2646 -6.5976 42 1 2.1662 -4.0434 1.0190 43 1 2.8340 -3.7418 -0.6144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014903004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:27 Heat of formation + Delta-G solvation = -14.441114 kcal Electronic energy + Delta-G solvation = -21902.368794 eV Core-core repulsion = 18754.531422 eV Total energy + Delta-G solvation = -3147.837372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.89345 -38.41754 -37.05837 -33.67991 -32.71151 -31.70158 -31.06275 -29.22967 -27.82247 -26.62477 -24.43081 -22.62829 -22.20499 -20.43609 -20.04784 -19.66649 -17.97465 -17.07969 -16.61820 -16.01354 -15.75358 -15.08492 -14.65576 -14.35241 -14.02959 -13.85062 -13.44624 -13.31510 -12.90828 -12.73709 -12.43799 -12.20931 -12.12427 -11.92469 -11.80469 -11.47541 -10.97392 -10.94990 -10.89170 -10.68700 -10.60293 -10.35672 -10.15088 -10.13506 -9.95759 -9.68035 -9.36706 -8.98391 -8.70644 -8.48882 -6.82393 -5.72737 -3.05113 2.35643 2.98782 3.38941 3.44708 3.46449 3.58189 4.49604 4.60928 4.65212 4.74103 4.99612 5.10571 5.23544 5.30573 5.37963 5.41064 5.47109 5.48332 5.50013 5.62070 5.64530 5.75675 5.78389 5.79525 5.84302 5.85339 6.00003 6.21634 6.26134 6.30386 6.38587 6.49671 6.55157 6.70621 6.73897 6.98689 7.09934 7.52857 7.55642 7.78756 7.95003 8.24213 8.61319 9.21554 9.81452 10.47543 11.39221 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.003741 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.837787 B = 7482.810800 C = 8130.647582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.128 3.872 13 H 0.087 0.913 14 N -0.706 5.706 15 C 0.512 3.488 16 O -0.549 6.549 17 C -0.135 4.135 18 C -0.043 4.043 19 H 0.088 0.912 20 C -0.128 4.128 21 C -0.176 4.176 22 C -0.088 4.088 23 C -0.120 4.120 24 C -0.117 4.117 25 C 0.126 3.874 26 H 0.251 0.749 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.402 0.598 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -13.932 -12.268 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.192 4.192 12 C 0.023 3.977 13 H 0.105 0.895 14 N -0.356 5.356 15 C 0.298 3.702 16 O -0.428 6.428 17 C -0.175 4.175 18 C -0.061 4.061 19 H 0.106 0.894 20 C -0.146 4.146 21 C -0.194 4.194 22 C -0.125 4.125 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.002 4.002 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.236 0.764 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.128 -14.278 -11.829 18.576 hybrid contribution 0.091 1.290 -0.032 1.294 sum 1.219 -12.988 -11.861 17.631 Atomic orbital electron populations 1.69951 1.04815 1.24947 1.57480 1.24775 0.95726 0.97573 1.02448 0.86122 0.78623 0.83537 0.77528 1.21675 1.21708 1.20743 1.19064 0.90432 0.82428 1.43329 0.90581 1.44503 1.01468 0.99893 1.87231 1.21163 0.84568 0.87933 1.01188 1.23215 0.95735 1.00074 1.00220 1.22098 0.97249 0.99141 0.79239 0.89528 1.45892 1.45118 1.37343 1.07211 1.20574 0.79396 0.80554 0.89651 1.90658 1.41658 1.37669 1.72780 1.21703 1.01851 1.01376 0.92527 1.19826 0.99273 0.92143 0.94861 0.89372 1.22174 0.98740 0.94157 0.99511 1.21937 1.03084 0.98688 0.95739 1.20418 0.99090 0.98082 0.94919 1.21589 0.98807 0.94777 1.00572 1.21681 1.00832 0.98223 0.94692 1.21949 0.94854 0.86349 0.97007 0.93830 0.93632 0.93826 0.91649 0.91049 0.76389 0.89105 0.88595 0.87109 0.88363 0.91326 0.91602 0.91856 0.91717 0.91621 0.91502 0.95604 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.31 55.49 0.57 -26.04 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.21 3.40 -170.00 -0.58 -15.79 16 10 C 0.18 4.10 5.36 -3.07 -0.02 4.08 16 11 C -0.15 -2.72 6.53 -24.90 -0.16 -2.88 16 12 C 0.13 2.30 3.37 -65.79 -0.22 2.08 16 13 H 0.09 1.52 7.63 -51.93 -0.40 1.12 16 14 N -0.71 -11.42 5.20 -51.73 -0.27 -11.68 16 15 C 0.51 8.02 7.46 -10.98 -0.08 7.93 16 16 O -0.55 -10.20 13.97 5.55 0.08 -10.13 16 17 C -0.13 -1.59 5.14 -27.88 -0.14 -1.74 16 18 C -0.04 -0.50 2.12 -92.07 -0.20 -0.69 16 19 H 0.09 1.19 7.95 -51.93 -0.41 0.77 16 20 C -0.13 -1.59 8.40 -35.85 -0.30 -1.89 16 21 C -0.18 -1.90 9.80 -35.85 -0.35 -2.25 16 22 C -0.09 -0.78 6.11 -28.18 -0.17 -0.95 16 23 C -0.12 -1.05 6.01 -26.52 -0.16 -1.21 16 24 C -0.12 -1.10 5.30 -26.52 -0.14 -1.24 16 25 C 0.13 2.70 6.93 -2.48 -0.02 2.68 16 26 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 28 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.40 6.12 8.64 -40.82 -0.35 5.77 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.11 1.59 6.51 -52.49 -0.34 1.25 16 35 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -30.96 339.53 -9.63 -40.59 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.32 Total: 3.74 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.21 Total: -2.83 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.27 Total: -53.51 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.96 -9.63 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.148 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds