Wall clock time and date at job start Tue Mar 31 2020 00:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48500 * 109.46891 * 269.99719 * 3 2 1 5 5 H 1.48493 * 109.46900 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47075 * 149.99997 * 3 2 1 7 7 C 1.38819 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00335 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99704 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.65289 * 0.02562 * 9 7 2 11 11 C 1.54319 * 107.27606 * 178.90843 * 10 9 7 12 12 C 1.55162 * 102.94003 * 337.80896 * 11 10 9 13 13 H 1.08997 * 111.00561 * 153.61090 * 12 11 10 14 14 N 1.46499 * 111.00809 * 277.42784 * 12 11 10 15 15 C 1.34777 * 120.00199 * 201.82276 * 14 12 11 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 12 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 12 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 H 1.09006 * 109.35341 * 304.99796 * 18 17 15 20 20 C 1.50074 * 109.35886 * 64.71820 * 18 17 15 21 21 C 1.29256 * 124.21634 * 137.49096 * 20 18 17 22 22 C 1.50067 * 124.01673 * 359.27017 * 21 20 18 23 23 C 1.53026 * 110.14995 * 17.26443 * 22 21 20 24 24 C 1.53021 * 109.36190 * 185.27493 * 18 17 15 25 25 C 1.47527 * 125.63597 * 179.97438 * 9 7 2 26 26 H 0.96999 * 120.00013 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.87607 * 59.49198 * 10 9 7 28 28 H 1.09003 * 109.88331 * 298.32830 * 10 9 7 29 29 H 1.08997 * 110.72437 * 219.44927 * 11 10 9 30 30 H 1.08998 * 110.72377 * 96.17099 * 11 10 9 31 31 H 0.97000 * 119.99484 * 21.81373 * 14 12 11 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 34 34 H 1.07997 * 117.95987 * 317.31987 * 20 18 17 35 35 H 1.07996 * 118.01622 * 179.38099 * 21 20 18 36 36 H 1.08999 * 109.35883 * 257.05188 * 22 21 20 37 37 H 1.09003 * 109.24612 * 137.39801 * 22 21 20 38 38 H 1.09002 * 109.64344 * 190.87846 * 23 22 21 39 39 H 1.08997 * 109.81882 * 70.34561 * 23 22 21 40 40 H 1.09000 * 109.64101 * 310.04375 * 24 18 17 41 41 H 1.09002 * 109.63911 * 70.66851 * 24 18 17 42 42 H 1.09002 * 110.37175 * 85.33707 * 25 9 7 43 43 H 1.09000 * 110.41141 * 322.99164 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4486 -4.0441 -0.0282 12 6 0.8522 -4.6559 -0.6122 13 1 0.9835 -5.6854 -0.2793 14 7 0.8601 -4.5749 -2.0749 15 6 1.6419 -5.4064 -2.7917 16 8 2.3393 -6.2214 -2.2257 17 6 1.6546 -5.3189 -4.2961 18 6 2.6232 -6.3606 -4.8595 19 1 3.6052 -6.2229 -4.4067 20 6 2.1161 -7.7362 -4.5388 21 6 2.1230 -8.7256 -5.3705 22 6 2.6259 -8.6329 -6.7814 23 6 3.4946 -7.3845 -6.9503 24 6 2.7342 -6.1829 -6.3753 25 6 1.9340 -3.7320 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5569 -2.0518 -0.8843 28 1 -0.5551 -2.0848 0.9012 29 1 -1.2981 -4.2512 -0.6789 30 1 -0.6325 -4.4185 0.9788 31 1 0.3025 -3.9228 -2.5275 32 1 0.6523 -5.5099 -4.6797 33 1 1.9759 -4.3225 -4.5994 34 1 1.7221 -7.9126 -3.5488 35 1 1.7421 -9.6771 -5.0301 36 1 1.7782 -8.5783 -7.4643 37 1 3.2182 -9.5188 -7.0107 38 1 3.6956 -7.2184 -8.0087 39 1 4.4350 -7.5133 -6.4146 40 1 1.7369 -6.1369 -6.8127 41 1 3.2778 -5.2646 -6.5976 42 1 2.1662 -4.0434 1.0190 43 1 2.8340 -3.7418 -0.6144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014903004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:25 Heat of formation + Delta-G solvation = -32.748623 kcal Electronic energy + Delta-G solvation = -21903.162667 eV Core-core repulsion = 18754.531422 eV Total energy + Delta-G solvation = -3148.631245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.12193 -39.53797 -38.52322 -35.36941 -33.83771 -33.29606 -31.85651 -31.02822 -29.27126 -27.89300 -26.35068 -23.57360 -23.03087 -22.05127 -21.59423 -21.08245 -18.94156 -18.80445 -17.94502 -17.26614 -16.89842 -16.63220 -16.25081 -15.68222 -15.46423 -15.01683 -14.83028 -14.56712 -13.91536 -13.87107 -13.72841 -13.56025 -13.48440 -13.18116 -12.97030 -12.89710 -12.79069 -12.39876 -12.23806 -12.10244 -12.01709 -11.81576 -11.70377 -11.60785 -11.38958 -11.00502 -10.72076 -10.60437 -9.99287 -9.84103 -8.86787 -7.85550 -5.19829 1.45886 1.46781 1.46906 1.55800 1.74241 2.33655 2.49014 3.33244 3.66967 3.70532 3.80352 3.84961 3.94242 4.08157 4.09180 4.31544 4.32360 4.43395 4.53347 4.55087 4.67760 4.73110 4.75569 4.82443 4.85473 4.90169 4.93085 5.01954 5.04371 5.10599 5.12378 5.25045 5.43508 5.46126 5.51641 5.61884 5.68846 5.76629 5.86008 6.13235 6.19499 6.67630 7.11439 7.35377 7.76649 8.41166 9.24355 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025499 B = 0.003741 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.837787 B = 7482.810800 C = 8130.647582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.621 5.621 10 C 0.185 3.815 11 C -0.133 4.133 12 C 0.142 3.858 13 H 0.098 0.902 14 N -0.706 5.706 15 C 0.509 3.491 16 O -0.580 6.580 17 C -0.127 4.127 18 C -0.039 4.039 19 H 0.063 0.937 20 C -0.152 4.152 21 C -0.164 4.164 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.113 4.113 25 C 0.123 3.877 26 H 0.248 0.752 27 H 0.022 0.978 28 H 0.008 0.992 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.408 0.592 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -14.681 -14.143 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.060 3.940 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.115 0.885 14 N -0.356 5.356 15 C 0.297 3.703 16 O -0.461 6.461 17 C -0.166 4.166 18 C -0.058 4.058 19 H 0.081 0.919 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.004 4.004 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.243 0.757 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.971 -15.048 -13.719 20.387 hybrid contribution 0.182 1.457 0.576 1.577 sum 1.153 -13.591 -13.143 18.942 Atomic orbital electron populations 1.70148 1.05954 1.25267 1.58105 1.25539 0.96631 1.00560 1.02513 0.85129 0.77524 0.79414 0.77549 1.21056 1.21908 1.20049 1.19352 0.90680 0.83898 1.43287 0.90986 1.44733 1.02485 1.00484 1.87044 1.20953 0.83353 0.91423 0.98293 1.23067 0.96528 0.95589 1.02001 1.21882 0.95667 0.98583 0.80336 0.88452 1.45908 1.45478 1.37705 1.06491 1.21267 0.78261 0.79518 0.91207 1.90645 1.42795 1.38896 1.73753 1.21743 1.03394 1.02120 0.89390 1.19777 0.97755 0.91769 0.96504 0.91929 1.22049 1.00827 0.95234 0.98875 1.22197 1.01189 0.98224 0.96588 1.20495 0.99798 0.98679 0.93597 1.21616 0.98193 0.94440 1.01574 1.21674 1.01759 0.98935 0.92649 1.22057 0.95425 0.85756 0.97113 0.94303 0.95993 0.97404 0.88718 0.89422 0.75708 0.86721 0.87438 0.89701 0.87869 0.89751 0.90356 0.89878 0.92778 0.90442 0.90791 0.95506 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.43 10.31 21.65 0.22 -55.20 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 3 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.24 -13.74 10.28 84.04 0.86 -12.88 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -31.73 3.40 -691.75 -2.35 -34.08 16 10 C 0.18 8.67 5.36 86.73 0.47 9.14 16 11 C -0.13 -4.53 6.53 31.78 0.21 -4.32 16 12 C 0.14 4.94 3.37 46.38 0.16 5.10 16 13 H 0.10 3.27 7.63 -2.39 -0.02 3.25 16 14 N -0.71 -22.16 5.20 -435.98 -2.27 -24.43 16 15 C 0.51 15.66 7.46 87.66 0.65 16.31 16 16 O -0.58 -21.74 13.97 -3.04 -0.04 -21.78 16 17 C -0.13 -2.83 5.14 29.85 0.15 -2.68 16 18 C -0.04 -0.89 2.12 -11.73 -0.02 -0.92 16 19 H 0.06 1.71 7.95 -2.38 -0.02 1.69 16 20 C -0.15 -3.68 8.40 27.22 0.23 -3.45 16 21 C -0.16 -3.27 9.80 27.22 0.27 -3.01 16 22 C -0.09 -1.33 6.11 29.66 0.18 -1.14 16 23 C -0.12 -1.83 6.01 30.73 0.18 -1.64 16 24 C -0.11 -1.87 5.30 30.73 0.16 -1.70 16 25 C 0.12 5.33 6.93 86.83 0.60 5.93 16 26 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.02 1.12 7.38 -2.38 -0.02 1.10 16 28 H 0.01 0.41 7.51 -2.39 -0.02 0.40 16 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.41 11.91 8.64 -92.71 -0.80 11.11 16 32 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.48 6.51 -2.91 -0.02 2.46 16 35 H 0.10 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 40 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.07 339.53 2.33 -65.73 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.18 Total: 20.23 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 4.57 Total: 1.88 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -4.40 Total: -113.71 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.04 Total: -21.78 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.07 2.33 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.983 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds