Wall clock time and date at job start Tue Mar 31 2020 00:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47026 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.46920 * 29.99690 * 3 2 1 6 6 H 1.48508 * 109.47306 * 149.99729 * 3 2 1 7 7 C 1.38818 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.65005 * 359.95527 * 9 7 2 11 11 C 1.54904 * 104.83424 * 204.16561 * 10 9 7 12 12 C 1.55155 * 101.58277 * 322.98933 * 11 10 9 13 13 H 1.09002 * 110.87268 * 277.07067 * 12 11 10 14 14 N 1.46496 * 110.72344 * 153.86360 * 12 11 10 15 15 C 1.34777 * 120.00271 * 160.02126 * 14 12 11 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 12 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.35448 * 305.27182 * 18 17 15 20 20 C 1.50066 * 109.36072 * 65.00177 * 18 17 15 21 21 C 1.29442 * 124.07363 * 137.31881 * 20 18 17 22 22 C 1.50068 * 124.07806 * 359.54509 * 21 20 18 23 23 C 1.53021 * 110.14725 * 17.13689 * 22 21 20 24 24 C 1.53029 * 109.35538 * 185.69310 * 18 17 15 25 25 C 1.47018 * 125.65101 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00072 * 0.02562 * 1 2 3 27 27 H 1.09005 * 110.36516 * 323.00187 * 10 9 7 28 28 H 1.09000 * 110.36713 * 85.21320 * 10 9 7 29 29 H 1.08999 * 111.00869 * 204.91138 * 11 10 9 30 30 H 1.09007 * 111.00420 * 81.06235 * 11 10 9 31 31 H 0.97005 * 120.00266 * 340.02709 * 14 12 11 32 32 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 33 33 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 34 34 H 1.08002 * 117.95735 * 317.33657 * 20 18 17 35 35 H 1.08001 * 117.95969 * 179.53461 * 21 20 18 36 36 H 1.09000 * 109.35455 * 137.34231 * 22 21 20 37 37 H 1.09000 * 109.35744 * 256.92747 * 22 21 20 38 38 H 1.09000 * 109.63757 * 70.24332 * 23 22 21 39 39 H 1.08996 * 109.64307 * 190.66121 * 23 22 21 40 40 H 1.08998 * 109.63791 * 310.03619 * 24 18 17 41 41 H 1.08993 * 109.64291 * 70.66786 * 24 18 17 42 42 H 1.08994 * 109.88604 * 59.48335 * 25 9 7 43 43 H 1.09007 * 109.87949 * 298.31874 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4015 -3.9319 0.6138 12 6 0.7783 -4.7524 0.0290 13 1 0.5477 -5.1010 -0.9777 14 7 1.1087 -5.8806 0.9032 15 6 1.8006 -6.9300 0.4168 16 8 2.1502 -6.9400 -0.7445 17 6 2.1399 -8.0908 1.3159 18 6 2.9229 -9.1387 0.5223 19 1 2.3537 -9.4206 -0.3635 20 6 4.2428 -8.5610 0.1026 21 6 5.3660 -9.2018 0.1597 22 6 5.5068 -10.6086 0.6628 23 6 4.1415 -11.2993 0.6857 24 6 3.1428 -10.3761 1.3954 25 6 1.9317 -3.7275 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5992 -1.7584 0.6162 28 1 -0.5277 -2.4855 -1.0172 29 1 -1.3590 -4.3326 0.2809 30 1 -0.3516 -3.8970 1.7021 31 1 0.8293 -5.8725 1.8321 32 1 1.2208 -8.5356 1.6975 33 1 2.7469 -7.7390 2.1501 34 1 4.2563 -7.5474 -0.2700 35 1 6.2572 -8.6923 -0.1757 36 1 6.1802 -11.1609 0.0074 37 1 5.9203 -10.5920 1.6712 38 1 3.8078 -11.4849 -0.3352 39 1 4.2179 -12.2442 1.2236 40 1 3.5456 -10.0752 2.3625 41 1 2.1966 -10.8985 1.5355 42 1 2.5587 -3.8507 0.8835 43 1 2.5276 -3.8647 -0.9019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014903006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:29 Heat of formation + Delta-G solvation = -12.405436 kcal Electronic energy + Delta-G solvation = -21641.091670 eV Core-core repulsion = 18493.342572 eV Total energy + Delta-G solvation = -3147.749098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98313 -38.43560 -37.08228 -33.97431 -32.80084 -31.78835 -31.09122 -29.23020 -27.87927 -26.49488 -24.43065 -22.61746 -22.23781 -20.59094 -20.23315 -19.65128 -18.02953 -17.14008 -16.69736 -16.04895 -15.89938 -15.06138 -14.72695 -14.48264 -14.24962 -13.95669 -13.40800 -13.18010 -12.91811 -12.77186 -12.49566 -12.29630 -12.19285 -11.94951 -11.64810 -11.55133 -11.08905 -11.02908 -10.92210 -10.79926 -10.66994 -10.48605 -10.21142 -10.11296 -9.82397 -9.61051 -9.42427 -9.00259 -8.70040 -8.65202 -6.83710 -5.65853 -3.07203 2.32837 2.85920 3.40031 3.42033 3.46006 3.48087 4.49046 4.54660 4.56948 4.65559 4.88880 5.02325 5.14155 5.26625 5.31841 5.37658 5.43252 5.45829 5.52049 5.54028 5.55870 5.64611 5.73973 5.76821 5.80901 5.83775 5.92459 6.18256 6.21236 6.25031 6.41265 6.48656 6.57666 6.72572 6.76749 6.96612 7.05007 7.47445 7.62120 7.75344 7.84983 8.34119 8.48301 9.21869 9.82482 10.46796 11.38444 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.003267 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.027658 B = 8568.804646 C = 9191.774339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.131 3.869 13 H 0.089 0.911 14 N -0.719 5.719 15 C 0.508 3.492 16 O -0.539 6.539 17 C -0.134 4.134 18 C -0.043 4.043 19 H 0.087 0.913 20 C -0.132 4.132 21 C -0.174 4.174 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.116 4.116 25 C 0.130 3.870 26 H 0.252 0.748 27 H 0.110 0.890 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -21.062 5.568 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.188 4.188 12 C 0.026 3.974 13 H 0.107 0.893 14 N -0.370 5.370 15 C 0.295 3.705 16 O -0.416 6.416 17 C -0.174 4.174 18 C -0.061 4.061 19 H 0.106 0.894 20 C -0.150 4.150 21 C -0.192 4.192 22 C -0.126 4.126 23 C -0.157 4.157 24 C -0.153 4.153 25 C 0.002 3.998 26 H 0.063 0.937 27 H 0.128 0.872 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.828 -20.827 4.721 21.696 hybrid contribution 0.401 0.992 0.325 1.118 sum 4.228 -19.835 5.047 20.899 Atomic orbital electron populations 1.69768 1.04888 1.24801 1.57846 1.24785 0.95754 0.97713 1.02483 0.86051 0.78507 0.83220 0.77610 1.21599 1.21635 1.20698 1.19096 0.90553 0.82393 1.42845 0.90494 1.44457 1.01892 0.99705 1.86990 1.21935 0.84882 0.91935 0.98470 1.23310 0.95991 0.99156 1.00361 1.22074 0.96089 0.85012 0.94193 0.89262 1.46139 1.56898 1.19491 1.14423 1.20654 0.77640 0.83565 0.88690 1.90698 1.52551 1.80284 1.18068 1.21720 1.01839 0.94818 0.99046 1.19828 0.94667 0.93382 0.98244 0.89449 1.22222 0.93367 1.00615 0.98765 1.22001 0.97954 0.96525 1.02734 1.20422 0.97347 0.93895 1.00903 1.21589 0.95178 0.97943 1.01028 1.21676 0.99329 0.95564 0.98765 1.21595 0.93993 0.85879 0.98287 0.93705 0.87225 0.96687 0.91790 0.91683 0.76865 0.88866 0.88897 0.86929 0.88215 0.91516 0.91287 0.91740 0.91826 0.91595 0.91632 0.95797 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.09 55.49 0.56 -26.42 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.60 -15.84 3.39 -170.07 -0.58 -16.42 16 10 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 11 C -0.15 -2.72 6.69 -24.59 -0.16 -2.89 16 12 C 0.13 2.40 3.24 -66.10 -0.21 2.18 16 13 H 0.09 1.75 7.69 -51.93 -0.40 1.35 16 14 N -0.72 -10.30 5.13 -52.03 -0.27 -10.57 16 15 C 0.51 7.31 7.46 -10.98 -0.08 7.23 16 16 O -0.54 -9.87 14.02 5.56 0.08 -9.79 16 17 C -0.13 -1.34 5.13 -27.88 -0.14 -1.49 16 18 C -0.04 -0.45 2.11 -92.06 -0.19 -0.65 16 19 H 0.09 1.05 7.94 -51.93 -0.41 0.63 16 20 C -0.13 -1.63 8.42 -35.90 -0.30 -1.94 16 21 C -0.17 -1.90 9.80 -35.90 -0.35 -2.25 16 22 C -0.09 -0.76 6.11 -28.18 -0.17 -0.93 16 23 C -0.12 -0.96 6.01 -26.51 -0.16 -1.12 16 24 C -0.12 -0.94 5.30 -26.51 -0.14 -1.08 16 25 C 0.13 2.89 6.99 -3.07 -0.02 2.87 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.11 8.00 -51.93 -0.42 0.70 16 31 H 0.40 4.54 8.52 -40.82 -0.35 4.19 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.11 1.70 6.54 -52.49 -0.34 1.35 16 35 H 0.10 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.53 8.03 -51.93 -0.42 0.12 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -32.04 338.72 -9.59 -41.63 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.26 Total: 2.44 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.21 Total: -3.25 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.28 Total: -53.41 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.04 -9.59 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.227 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds