Wall clock time and date at job start Tue Mar 31 2020 00:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47026 * 269.99933 * 3 2 1 5 5 H 1.48500 * 109.46920 * 29.99690 * 3 2 1 6 6 H 1.48508 * 109.47306 * 149.99729 * 3 2 1 7 7 C 1.38818 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.65005 * 359.95527 * 9 7 2 11 11 C 1.54904 * 104.83424 * 204.16561 * 10 9 7 12 12 C 1.55155 * 101.58277 * 322.98933 * 11 10 9 13 13 H 1.09002 * 110.87268 * 277.07067 * 12 11 10 14 14 N 1.46496 * 110.72344 * 153.86360 * 12 11 10 15 15 C 1.34777 * 120.00271 * 160.02126 * 14 12 11 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 12 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 12 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.35448 * 305.27182 * 18 17 15 20 20 C 1.50066 * 109.36072 * 65.00177 * 18 17 15 21 21 C 1.29442 * 124.07363 * 137.31881 * 20 18 17 22 22 C 1.50068 * 124.07806 * 359.54509 * 21 20 18 23 23 C 1.53021 * 110.14725 * 17.13689 * 22 21 20 24 24 C 1.53029 * 109.35538 * 185.69310 * 18 17 15 25 25 C 1.47018 * 125.65101 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00072 * 0.02562 * 1 2 3 27 27 H 1.09005 * 110.36516 * 323.00187 * 10 9 7 28 28 H 1.09000 * 110.36713 * 85.21320 * 10 9 7 29 29 H 1.08999 * 111.00869 * 204.91138 * 11 10 9 30 30 H 1.09007 * 111.00420 * 81.06235 * 11 10 9 31 31 H 0.97005 * 120.00266 * 340.02709 * 14 12 11 32 32 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 33 33 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 34 34 H 1.08002 * 117.95735 * 317.33657 * 20 18 17 35 35 H 1.08001 * 117.95969 * 179.53461 * 21 20 18 36 36 H 1.09000 * 109.35455 * 137.34231 * 22 21 20 37 37 H 1.09000 * 109.35744 * 256.92747 * 22 21 20 38 38 H 1.09000 * 109.63757 * 70.24332 * 23 22 21 39 39 H 1.08996 * 109.64307 * 190.66121 * 23 22 21 40 40 H 1.08998 * 109.63791 * 310.03619 * 24 18 17 41 41 H 1.08993 * 109.64291 * 70.66786 * 24 18 17 42 42 H 1.08994 * 109.88604 * 59.48335 * 25 9 7 43 43 H 1.09007 * 109.87949 * 298.31874 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4015 -3.9319 0.6138 12 6 0.7783 -4.7524 0.0290 13 1 0.5477 -5.1010 -0.9777 14 7 1.1087 -5.8806 0.9032 15 6 1.8006 -6.9300 0.4168 16 8 2.1502 -6.9400 -0.7445 17 6 2.1399 -8.0908 1.3159 18 6 2.9229 -9.1387 0.5223 19 1 2.3537 -9.4206 -0.3635 20 6 4.2428 -8.5610 0.1026 21 6 5.3660 -9.2018 0.1597 22 6 5.5068 -10.6086 0.6628 23 6 4.1415 -11.2993 0.6857 24 6 3.1428 -10.3761 1.3954 25 6 1.9317 -3.7275 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5992 -1.7584 0.6162 28 1 -0.5277 -2.4855 -1.0172 29 1 -1.3590 -4.3326 0.2809 30 1 -0.3516 -3.8970 1.7021 31 1 0.8293 -5.8725 1.8321 32 1 1.2208 -8.5356 1.6975 33 1 2.7469 -7.7390 2.1501 34 1 4.2563 -7.5474 -0.2700 35 1 6.2572 -8.6923 -0.1757 36 1 6.1802 -11.1609 0.0074 37 1 5.9203 -10.5920 1.6712 38 1 3.8078 -11.4849 -0.3352 39 1 4.2179 -12.2442 1.2236 40 1 3.5456 -10.0752 2.3625 41 1 2.1966 -10.8985 1.5355 42 1 2.5587 -3.8507 0.8835 43 1 2.5276 -3.8647 -0.9019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014903006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:28 Heat of formation + Delta-G solvation = -32.270922 kcal Electronic energy + Delta-G solvation = -21641.953102 eV Core-core repulsion = 18493.342572 eV Total energy + Delta-G solvation = -3148.610530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13459 -39.51520 -38.58259 -35.59787 -33.91413 -33.38153 -31.84588 -31.06401 -29.25299 -27.83723 -26.32015 -23.50215 -23.01705 -22.29406 -21.68513 -21.08193 -19.03757 -18.81300 -17.93877 -17.39204 -16.91156 -16.68849 -16.23084 -15.91378 -15.48752 -15.03160 -14.71208 -14.39629 -14.25828 -13.77993 -13.71365 -13.51621 -13.48950 -13.19396 -13.03209 -12.96532 -12.75334 -12.48866 -12.34695 -12.19592 -12.03383 -11.86916 -11.68624 -11.44686 -11.39398 -11.01907 -10.79317 -10.61559 -10.06580 -9.85960 -8.95055 -7.81746 -5.27145 1.42835 1.44773 1.47070 1.55850 1.72124 2.22457 2.48507 3.28197 3.62291 3.73961 3.80021 3.83536 3.96047 4.03284 4.07293 4.22898 4.32610 4.44050 4.53263 4.56568 4.57336 4.72568 4.74763 4.83543 4.86877 4.88970 4.92870 5.00341 5.06493 5.10541 5.13416 5.26168 5.40959 5.45694 5.52916 5.55773 5.60844 5.75066 5.82963 6.11392 6.26762 6.65959 7.06829 7.36022 7.72141 8.35460 9.20011 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032587 B = 0.003267 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.027658 B = 8568.804646 C = 9191.774339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.983 3.017 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.624 5.624 10 C 0.152 3.848 11 C -0.125 4.125 12 C 0.149 3.851 13 H 0.075 0.925 14 N -0.707 5.707 15 C 0.504 3.496 16 O -0.583 6.583 17 C -0.123 4.123 18 C -0.041 4.041 19 H 0.068 0.932 20 C -0.155 4.155 21 C -0.167 4.167 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.109 4.109 25 C 0.130 3.870 26 H 0.250 0.750 27 H 0.083 0.917 28 H -0.013 1.013 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.416 0.584 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 -23.139 7.722 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.351 5.351 10 C 0.027 3.973 11 C -0.164 4.164 12 C 0.043 3.957 13 H 0.093 0.907 14 N -0.360 5.360 15 C 0.293 3.707 16 O -0.463 6.463 17 C -0.162 4.162 18 C -0.060 4.060 19 H 0.086 0.914 20 C -0.173 4.173 21 C -0.185 4.185 22 C -0.126 4.126 23 C -0.158 4.158 24 C -0.147 4.147 25 C 0.003 3.997 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.005 0.995 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 3.859 -22.939 6.912 24.267 hybrid contribution 0.472 1.639 -0.421 1.757 sum 4.331 -21.300 6.491 22.684 Atomic orbital electron populations 1.70004 1.06080 1.25310 1.58125 1.25633 0.96747 1.00884 1.02232 0.85024 0.77651 0.78854 0.77441 1.21517 1.21271 1.19545 1.19418 0.90878 0.83860 1.43373 0.90790 1.44749 1.02968 1.00469 1.86888 1.21784 0.83738 0.94966 0.96859 1.23106 0.97183 0.95014 1.01113 1.21593 0.94277 0.85299 0.94578 0.90705 1.45944 1.56955 1.18207 1.14866 1.21539 0.76290 0.84225 0.88671 1.90692 1.54020 1.81162 1.20448 1.21769 1.03660 0.92652 0.98152 1.19826 0.93198 0.94684 0.98259 0.91375 1.22153 0.95197 0.99409 1.00560 1.22240 0.97223 0.97836 1.01232 1.20491 0.98312 0.92055 1.01701 1.21625 0.94522 0.98810 1.00887 1.21666 1.00449 0.94179 0.98388 1.21675 0.95320 0.85666 0.97051 0.94013 0.89905 0.99465 0.88766 0.89670 0.74627 0.85226 0.87059 0.90690 0.88783 0.90609 0.89811 0.92739 0.89613 0.90514 0.89703 0.95504 0.98130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.45 10.09 21.65 0.22 -56.23 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.37 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.41 10.27 84.04 0.86 -13.55 16 8 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.62 -33.68 3.39 -691.99 -2.35 -36.03 16 10 C 0.15 7.51 5.89 86.85 0.51 8.02 16 11 C -0.13 -4.41 6.69 31.98 0.21 -4.19 16 12 C 0.15 5.40 3.24 46.18 0.15 5.54 16 13 H 0.07 2.97 7.69 -2.39 -0.02 2.95 16 14 N -0.71 -19.04 5.13 -436.92 -2.24 -21.28 16 15 C 0.50 14.01 7.46 87.66 0.65 14.66 16 16 O -0.58 -21.92 14.02 -3.02 -0.04 -21.96 16 17 C -0.12 -2.13 5.13 29.85 0.15 -1.98 16 18 C -0.04 -0.81 2.11 -11.73 -0.02 -0.83 16 19 H 0.07 1.60 7.94 -2.39 -0.02 1.58 16 20 C -0.15 -3.87 8.42 27.04 0.23 -3.64 16 21 C -0.17 -3.57 9.80 27.04 0.27 -3.30 16 22 C -0.09 -1.32 6.11 29.66 0.18 -1.14 16 23 C -0.12 -1.58 6.01 30.74 0.18 -1.40 16 24 C -0.11 -1.41 5.30 30.74 0.16 -1.25 16 25 C 0.13 5.93 6.99 86.73 0.61 6.54 16 26 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.08 4.57 5.87 -2.38 -0.01 4.56 16 28 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 29 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.08 2.68 8.00 -2.38 -0.02 2.67 16 31 H 0.42 8.15 8.52 -92.70 -0.79 7.36 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.42 6.54 -2.91 -0.02 2.40 16 35 H 0.09 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 43 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 Total: -1.00 -73.30 338.72 2.42 -70.88 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.19 Total: 15.88 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.61 Total: 0.36 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.37 Total: -113.54 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.04 Total: -21.96 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.30 2.42 -70.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014903006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.613 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds