Wall clock time and date at job start Tue Mar 31 2020 00:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48503 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47116 * 299.99823 * 3 2 1 6 6 H 1.48497 * 109.46891 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99951 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00275 * 359.72170 * 7 2 1 10 10 C 1.47027 * 125.64572 * 0.30039 * 9 7 2 11 11 C 1.54322 * 107.27109 * 181.02332 * 10 9 7 12 12 C 1.55153 * 102.94380 * 22.19503 * 11 10 9 13 13 H 1.08997 * 111.00794 * 82.56967 * 12 11 10 14 14 N 1.46497 * 111.00736 * 206.39057 * 12 11 10 15 15 C 1.34776 * 119.99958 * 205.00319 * 14 12 11 16 16 O 1.21282 * 120.00439 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99826 * 179.97438 * 15 14 12 18 18 H 1.08994 * 110.05667 * 336.97778 * 17 15 14 19 19 C 1.54386 * 110.07089 * 215.49291 * 17 15 14 20 20 C 1.54923 * 104.22926 * 217.22052 * 19 17 15 21 21 C 1.54988 * 102.81779 * 37.71611 * 20 19 17 22 22 C 1.53485 * 110.07294 * 98.46638 * 17 15 14 23 23 C 1.52557 * 121.08390 * 335.14532 * 22 17 15 24 24 C 1.52565 * 121.05288 * 263.43437 * 22 17 15 25 25 C 1.47424 * 125.65097 * 179.97438 * 9 7 2 26 26 H 0.97006 * 119.99740 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.88556 * 300.44190 * 10 9 7 28 28 H 1.09001 * 109.87990 * 61.45380 * 10 9 7 29 29 H 1.08995 * 110.71830 * 140.55680 * 11 10 9 30 30 H 1.08998 * 110.71791 * 263.65154 * 11 10 9 31 31 H 0.96998 * 120.00077 * 24.98787 * 14 12 11 32 32 H 1.09004 * 110.48000 * 335.90380 * 19 17 15 33 33 H 1.09001 * 110.48472 * 98.39816 * 19 17 15 34 34 H 1.09002 * 110.74588 * 156.04662 * 20 19 17 35 35 H 1.08996 * 110.73954 * 279.20665 * 20 19 17 36 36 H 1.09004 * 110.51285 * 81.07130 * 21 20 19 37 37 H 1.09002 * 110.51708 * 203.64903 * 21 20 19 38 38 H 1.09001 * 117.50862 * 357.03423 * 23 22 17 39 39 H 1.09006 * 117.50695 * 142.11376 * 23 22 17 40 40 H 1.08996 * 117.51090 * 217.94048 * 24 22 17 41 41 H 1.09003 * 117.51165 * 2.98036 * 24 22 17 42 42 H 1.08999 * 110.36383 * 274.74250 * 25 9 7 43 43 H 1.08990 * 110.36968 * 37.06655 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 0.0047 10 6 -0.1376 -2.5327 0.0049 11 6 -0.4486 -4.0439 0.0380 12 6 0.8515 -4.6535 0.6258 13 1 0.8562 -4.5890 1.7138 14 7 1.0284 -6.0389 0.1839 15 6 1.7583 -6.8950 0.9261 16 8 2.2691 -6.5183 1.9596 17 6 1.9398 -8.3204 0.4718 18 1 1.1318 -8.6035 -0.2026 19 6 1.9673 -9.2659 1.6919 20 6 3.0211 -10.3385 1.3188 21 6 4.1018 -9.5143 0.5739 22 6 3.2941 -8.4804 -0.2325 23 6 3.9839 -7.2906 -0.8929 24 6 3.4030 -8.4159 -1.7529 25 6 1.9334 -3.7311 0.0043 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5580 -2.0483 0.8862 28 1 -0.5544 -2.0859 -0.8978 29 1 -1.2988 -4.2484 0.6887 30 1 -0.6346 -4.4215 -0.9674 31 1 0.6201 -6.3403 -0.6428 32 1 2.2744 -8.7248 2.5869 33 1 0.9898 -9.7245 1.8412 34 1 3.4368 -10.7995 2.2148 35 1 2.5877 -11.0938 0.6633 36 1 4.7594 -9.0150 1.2855 37 1 4.6786 -10.1550 -0.0931 38 1 3.4565 -6.3367 -0.8883 39 1 5.0691 -7.2287 -0.8108 40 1 4.1058 -9.0942 -2.2366 41 1 2.4932 -8.2029 -2.3143 42 1 2.1620 -4.0437 -1.0146 43 1 2.8354 -3.7395 0.6160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014927998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:41 Heat of formation + Delta-G solvation = 3.022436 kcal Electronic energy + Delta-G solvation = -22304.568775 eV Core-core repulsion = 19157.488680 eV Total energy + Delta-G solvation = -3147.080095 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45171 -38.31945 -36.98172 -34.35651 -33.85849 -31.89627 -29.70002 -28.95672 -27.02569 -25.82604 -24.40256 -22.59138 -21.70883 -20.54992 -20.33282 -19.95720 -18.77205 -17.11845 -16.79483 -15.94353 -15.76181 -15.14704 -14.61227 -14.50119 -14.31685 -13.89784 -13.50778 -12.98593 -12.88874 -12.60876 -12.41765 -12.19485 -11.80835 -11.68334 -11.55880 -11.24554 -11.08647 -10.94213 -10.88995 -10.77842 -10.71977 -10.37827 -10.34704 -10.07551 -10.01893 -9.89663 -9.71382 -9.32333 -8.69715 -8.58086 -6.82919 -5.70540 -3.03976 2.82032 3.29189 3.41650 3.47348 3.49824 3.74661 4.21438 4.45350 4.52236 4.70128 4.73340 4.92689 5.07002 5.11367 5.25935 5.33298 5.44396 5.46307 5.52700 5.61424 5.62603 5.67689 5.74994 5.76027 5.80987 5.86397 5.90972 5.95052 6.02512 6.07493 6.20510 6.23658 6.34813 6.43135 6.62438 6.71138 7.00591 7.55047 7.58559 7.75718 7.83955 8.25658 8.48381 9.22829 9.82812 10.47812 11.41420 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003895 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.747046 B = 7186.212923 C = 7521.343961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.126 3.874 13 H 0.096 0.904 14 N -0.718 5.718 15 C 0.519 3.481 16 O -0.536 6.536 17 C -0.076 4.076 18 H 0.088 0.912 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.118 4.118 23 C -0.168 4.168 24 C -0.166 4.166 25 C 0.131 3.869 26 H 0.252 0.748 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.018 0.982 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -21.121 -2.024 21.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.021 3.979 13 H 0.114 0.886 14 N -0.368 5.368 15 C 0.305 3.695 16 O -0.413 6.413 17 C -0.098 4.098 18 H 0.106 0.894 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.205 4.205 24 C -0.203 4.203 25 C 0.003 3.997 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.229 0.771 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.036 0.964 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.856 -20.594 -1.257 20.829 hybrid contribution 0.139 0.876 -0.572 1.056 sum 2.995 -19.718 -1.829 20.028 Atomic orbital electron populations 1.69961 1.04879 1.24923 1.57346 1.24799 0.95746 0.97667 1.02256 0.86027 0.78762 0.83677 0.77220 1.20481 1.21762 1.21710 1.19126 0.90529 0.82288 1.43497 0.90349 1.44400 1.01637 0.99822 1.87218 1.21143 0.84530 0.87482 1.01455 1.23170 0.95973 1.00048 0.99662 1.22349 0.96715 0.78815 0.99989 0.88614 1.46124 1.53072 1.11576 1.26034 1.20440 0.77905 0.87245 0.83900 1.90685 1.47758 1.78457 1.24360 1.21417 0.97135 0.92823 0.98417 0.89369 1.22353 0.99417 0.95701 0.97460 1.22433 0.96104 0.97164 0.99960 1.21886 0.96931 0.95530 0.98004 1.21520 0.95749 1.00659 0.93916 1.23046 1.00709 0.93752 1.02983 1.23033 1.03181 1.02215 0.91834 1.21857 0.94860 0.86210 0.96774 0.93807 0.93253 0.93622 0.91705 0.92124 0.77095 0.89562 0.91320 0.91254 0.91429 0.90868 0.91549 0.88137 0.88558 0.88623 0.88702 0.96394 0.94010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 10.31 55.49 0.57 -26.74 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 9 N -0.60 -15.79 3.39 -169.92 -0.58 -16.37 16 10 C 0.18 4.34 5.38 -3.06 -0.02 4.33 16 11 C -0.15 -2.72 6.59 -24.90 -0.16 -2.88 16 12 C 0.13 2.33 3.44 -65.65 -0.23 2.10 16 13 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 14 N -0.72 -10.36 5.05 -51.61 -0.26 -10.62 16 15 C 0.52 7.77 5.51 -10.99 -0.06 7.71 16 16 O -0.54 -10.31 15.49 5.56 0.09 -10.22 16 17 C -0.08 -0.85 3.16 -90.79 -0.29 -1.14 16 18 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 19 C -0.11 -1.16 6.33 -24.99 -0.16 -1.31 16 20 C -0.12 -1.01 6.91 -24.67 -0.17 -1.18 16 21 C -0.09 -0.81 6.59 -25.16 -0.17 -0.98 16 22 C -0.12 -1.25 2.26 -154.19 -0.35 -1.60 16 23 C -0.17 -1.98 9.64 -26.91 -0.26 -2.24 16 24 C -0.17 -1.54 10.24 -26.91 -0.28 -1.81 16 25 C 0.13 2.84 6.94 -2.40 -0.02 2.82 16 26 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 27 H 0.05 1.33 7.37 -51.93 -0.38 0.94 16 28 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 31 H 0.40 4.56 8.54 -40.82 -0.35 4.21 16 32 H 0.09 1.10 6.97 -51.93 -0.36 0.74 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 38 H 0.10 1.40 7.18 -51.93 -0.37 1.03 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -32.34 340.75 -9.75 -42.08 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.28 Total: 2.44 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.40 Total: -3.15 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.27 Total: -53.72 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.34 -9.75 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014927998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.104 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds