Wall clock time and date at job start Tue Mar 31 2020 00:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00132 * 2 1 4 4 H 1.48503 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47116 * 299.99823 * 3 2 1 6 6 H 1.48497 * 109.46891 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99951 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00275 * 359.72170 * 7 2 1 10 10 C 1.47027 * 125.64572 * 0.30039 * 9 7 2 11 11 C 1.54322 * 107.27109 * 181.02332 * 10 9 7 12 12 C 1.55153 * 102.94380 * 22.19503 * 11 10 9 13 13 H 1.08997 * 111.00794 * 82.56967 * 12 11 10 14 14 N 1.46497 * 111.00736 * 206.39057 * 12 11 10 15 15 C 1.34776 * 119.99958 * 205.00319 * 14 12 11 16 16 O 1.21282 * 120.00439 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99826 * 179.97438 * 15 14 12 18 18 H 1.08994 * 110.05667 * 336.97778 * 17 15 14 19 19 C 1.54386 * 110.07089 * 215.49291 * 17 15 14 20 20 C 1.54923 * 104.22926 * 217.22052 * 19 17 15 21 21 C 1.54988 * 102.81779 * 37.71611 * 20 19 17 22 22 C 1.53485 * 110.07294 * 98.46638 * 17 15 14 23 23 C 1.52557 * 121.08390 * 335.14532 * 22 17 15 24 24 C 1.52565 * 121.05288 * 263.43437 * 22 17 15 25 25 C 1.47424 * 125.65097 * 179.97438 * 9 7 2 26 26 H 0.97006 * 119.99740 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.88556 * 300.44190 * 10 9 7 28 28 H 1.09001 * 109.87990 * 61.45380 * 10 9 7 29 29 H 1.08995 * 110.71830 * 140.55680 * 11 10 9 30 30 H 1.08998 * 110.71791 * 263.65154 * 11 10 9 31 31 H 0.96998 * 120.00077 * 24.98787 * 14 12 11 32 32 H 1.09004 * 110.48000 * 335.90380 * 19 17 15 33 33 H 1.09001 * 110.48472 * 98.39816 * 19 17 15 34 34 H 1.09002 * 110.74588 * 156.04662 * 20 19 17 35 35 H 1.08996 * 110.73954 * 279.20665 * 20 19 17 36 36 H 1.09004 * 110.51285 * 81.07130 * 21 20 19 37 37 H 1.09002 * 110.51708 * 203.64903 * 21 20 19 38 38 H 1.09001 * 117.50862 * 357.03423 * 23 22 17 39 39 H 1.09006 * 117.50695 * 142.11376 * 23 22 17 40 40 H 1.08996 * 117.51090 * 217.94048 * 24 22 17 41 41 H 1.09003 * 117.51165 * 2.98036 * 24 22 17 42 42 H 1.08999 * 110.36383 * 274.74250 * 25 9 7 43 43 H 1.08990 * 110.36968 * 37.06655 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 0.0047 10 6 -0.1376 -2.5327 0.0049 11 6 -0.4486 -4.0439 0.0380 12 6 0.8515 -4.6535 0.6258 13 1 0.8562 -4.5890 1.7138 14 7 1.0284 -6.0389 0.1839 15 6 1.7583 -6.8950 0.9261 16 8 2.2691 -6.5183 1.9596 17 6 1.9398 -8.3204 0.4718 18 1 1.1318 -8.6035 -0.2026 19 6 1.9673 -9.2659 1.6919 20 6 3.0211 -10.3385 1.3188 21 6 4.1018 -9.5143 0.5739 22 6 3.2941 -8.4804 -0.2325 23 6 3.9839 -7.2906 -0.8929 24 6 3.4030 -8.4159 -1.7529 25 6 1.9334 -3.7311 0.0043 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5580 -2.0483 0.8862 28 1 -0.5544 -2.0859 -0.8978 29 1 -1.2988 -4.2484 0.6887 30 1 -0.6346 -4.4215 -0.9674 31 1 0.6201 -6.3403 -0.6428 32 1 2.2744 -8.7248 2.5869 33 1 0.9898 -9.7245 1.8412 34 1 3.4368 -10.7995 2.2148 35 1 2.5877 -11.0938 0.6633 36 1 4.7594 -9.0150 1.2855 37 1 4.6786 -10.1550 -0.0931 38 1 3.4565 -6.3367 -0.8883 39 1 5.0691 -7.2287 -0.8108 40 1 4.1058 -9.0942 -2.2366 41 1 2.4932 -8.2029 -2.3143 42 1 2.1620 -4.0437 -1.0146 43 1 2.8354 -3.7395 0.6160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014927998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:41 Heat of formation + Delta-G solvation = -17.263695 kcal Electronic energy + Delta-G solvation = -22305.448448 eV Core-core repulsion = 19157.488680 eV Total energy + Delta-G solvation = -3147.959768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53923 -39.60146 -38.48642 -35.68037 -34.96925 -33.77699 -31.22174 -30.32640 -28.65619 -26.83106 -26.24155 -23.44770 -22.88121 -22.07565 -21.64471 -21.37282 -19.82126 -18.94950 -18.08746 -17.30064 -16.69952 -16.67254 -16.13836 -15.94160 -15.50343 -15.35016 -14.68477 -14.44908 -14.19667 -14.04287 -13.76906 -13.60577 -13.42644 -12.98657 -12.81668 -12.56048 -12.45031 -12.35663 -12.14609 -12.01838 -11.94701 -11.85246 -11.78559 -11.61713 -11.50631 -11.14845 -11.07385 -10.75540 -10.40991 -10.08868 -8.95194 -7.89372 -5.25766 1.43636 1.45088 1.55516 1.63216 2.10810 2.47757 2.86156 3.29322 3.40633 3.63406 3.66209 3.72380 3.89024 3.95403 4.03208 4.10101 4.18058 4.30248 4.36327 4.49462 4.56355 4.69463 4.70033 4.78451 4.80853 4.83433 4.94255 4.94915 5.03562 5.04827 5.10890 5.18198 5.20631 5.24575 5.29959 5.39217 5.48062 5.54968 5.61553 5.70598 6.15570 6.60996 7.06290 7.30592 7.71390 8.34904 9.20850 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030838 B = 0.003895 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.747046 B = 7186.212923 C = 7521.343961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.626 5.626 10 C 0.184 3.816 11 C -0.127 4.127 12 C 0.145 3.855 13 H 0.071 0.929 14 N -0.703 5.703 15 C 0.518 3.482 16 O -0.585 6.585 17 C -0.071 4.071 18 H 0.121 0.879 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.089 4.089 22 C -0.123 4.123 23 C -0.197 4.197 24 C -0.137 4.137 25 C 0.132 3.868 26 H 0.249 0.751 27 H 0.013 0.987 28 H 0.018 0.982 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.415 0.585 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.031 0.969 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -23.737 -3.498 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.353 5.353 10 C 0.059 3.941 11 C -0.166 4.166 12 C 0.039 3.961 13 H 0.089 0.911 14 N -0.355 5.355 15 C 0.306 3.694 16 O -0.464 6.464 17 C -0.092 4.092 18 H 0.139 0.861 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.235 4.235 24 C -0.173 4.173 25 C 0.005 3.995 26 H 0.058 0.942 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.252 0.748 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.049 0.951 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.618 -23.260 -2.762 23.569 hybrid contribution 0.264 1.694 -0.093 1.717 sum 2.882 -21.566 -2.855 21.944 Atomic orbital electron populations 1.70167 1.06153 1.25402 1.57920 1.25643 0.96717 1.00906 1.02175 0.84997 0.78006 0.79249 0.76977 1.19383 1.21311 1.21695 1.19455 0.90869 0.83807 1.43636 0.90606 1.44687 1.02716 1.00728 1.87165 1.20944 0.83395 0.91413 0.98367 1.22984 0.96277 0.95262 1.02086 1.21810 0.95459 0.80536 0.98321 0.91109 1.45896 1.53110 1.09660 1.26792 1.21239 0.76477 0.88734 0.82939 1.90673 1.49522 1.79587 1.26634 1.21520 0.98636 0.89637 0.99416 0.86086 1.22381 1.01131 0.95920 0.95805 1.22432 0.94996 0.96771 1.00577 1.21924 0.97136 0.95562 0.97975 1.21640 0.95351 1.00077 0.95292 1.22984 1.00477 0.93589 1.06409 1.23145 1.03524 0.99922 0.90747 1.21937 0.95013 0.85365 0.97166 0.94168 0.96902 0.96389 0.89379 0.88948 0.74781 0.92741 0.89370 0.90605 0.89087 0.92903 0.89544 0.90783 0.88968 0.86703 0.87280 0.95107 0.96200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.66 10.31 21.65 0.22 -57.44 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 3 Si 0.98 46.97 29.55 68.60 2.03 48.99 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.25 -14.64 10.28 84.03 0.86 -13.78 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.73 3.39 -691.50 -2.35 -36.08 16 10 C 0.18 9.15 5.38 86.73 0.47 9.62 16 11 C -0.13 -4.47 6.59 31.78 0.21 -4.26 16 12 C 0.15 5.32 3.44 46.47 0.16 5.48 16 13 H 0.07 3.00 7.54 -2.39 -0.02 2.98 16 14 N -0.70 -19.18 5.05 -435.58 -2.20 -21.38 16 15 C 0.52 15.09 5.51 87.66 0.48 15.57 16 16 O -0.58 -23.08 15.49 -3.04 -0.05 -23.13 16 17 C -0.07 -1.40 3.16 -10.91 -0.03 -1.44 16 18 H 0.12 1.62 8.11 -2.39 -0.02 1.60 16 19 C -0.11 -2.14 6.33 31.72 0.20 -1.94 16 20 C -0.11 -1.54 6.91 31.93 0.22 -1.32 16 21 C -0.09 -1.48 6.59 31.61 0.21 -1.27 16 22 C -0.12 -2.33 2.26 -51.97 -0.12 -2.45 16 23 C -0.20 -4.49 9.64 30.48 0.29 -4.19 16 24 C -0.14 -2.06 10.24 30.48 0.31 -1.75 16 25 C 0.13 5.87 6.94 86.94 0.60 6.47 16 26 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 27 H 0.01 0.72 7.37 -2.39 -0.02 0.70 16 28 H 0.02 0.98 7.50 -2.39 -0.02 0.96 16 29 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.09 2.69 8.01 -2.39 -0.02 2.67 16 31 H 0.41 8.20 8.54 -92.71 -0.79 7.41 16 32 H 0.05 1.38 6.97 -2.39 -0.02 1.36 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 38 H 0.07 2.07 7.18 -2.39 -0.02 2.05 16 39 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.25 340.75 2.19 -72.07 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.20 Total: 15.31 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 4.33 Total: 1.65 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.32 Total: -114.89 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.25 2.19 -72.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014927998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.803 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds