Wall clock time and date at job start Tue Mar 31 2020 00:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47336 * 274.98388 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.98887 * 3 2 1 6 6 H 1.48508 * 109.47033 * 154.98580 * 3 2 1 7 7 C 1.38812 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99671 * 187.03447 * 7 2 1 9 9 N 1.36935 * 119.99721 * 7.03803 * 7 2 1 10 10 C 1.47022 * 125.64936 * 354.82888 * 9 7 2 11 11 C 1.54326 * 107.40188 * 178.90068 * 10 9 7 12 12 C 1.55406 * 102.82760 * 337.97911 * 11 10 9 13 13 H 1.08994 * 110.89286 * 277.26582 * 12 11 10 14 14 N 1.46504 * 111.06796 * 153.48319 * 12 11 10 15 15 C 1.34778 * 119.99782 * 161.21274 * 14 12 11 16 16 O 1.21280 * 120.00046 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00348 * 180.02562 * 15 14 12 18 18 H 1.09008 * 110.05002 * 25.47169 * 17 15 14 19 19 C 1.54385 * 110.07442 * 146.95684 * 17 15 14 20 20 C 1.55010 * 104.18128 * 142.76329 * 19 17 15 21 21 C 1.54991 * 102.84999 * 322.33884 * 20 19 17 22 22 C 1.53476 * 110.06934 * 263.98814 * 17 15 14 23 23 C 1.52571 * 121.05577 * 96.54135 * 22 17 15 24 24 C 1.52546 * 121.08649 * 24.82795 * 22 17 15 25 25 C 1.47426 * 125.64858 * 174.87859 * 9 7 2 26 26 H 0.97001 * 119.99980 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.88609 * 298.39776 * 10 9 7 28 28 H 1.08996 * 109.88010 * 59.41027 * 10 9 7 29 29 H 1.09001 * 110.71821 * 96.24959 * 11 10 9 30 30 H 1.08991 * 110.72406 * 219.52421 * 11 10 9 31 31 H 0.96998 * 120.00230 * 341.20822 * 14 12 11 32 32 H 1.08996 * 110.48538 * 261.48589 * 19 17 15 33 33 H 1.08999 * 110.48017 * 24.11661 * 19 17 15 34 34 H 1.08996 * 110.75405 * 203.98331 * 20 19 17 35 35 H 1.09000 * 110.85558 * 80.73975 * 20 19 17 36 36 H 1.09000 * 110.51055 * 278.89101 * 21 20 19 37 37 H 1.09003 * 110.62901 * 156.24407 * 21 20 19 38 38 H 1.08998 * 117.51034 * 356.97435 * 23 22 17 39 39 H 1.08997 * 117.51263 * 142.05879 * 23 22 17 40 40 H 1.09000 * 117.51098 * 217.88590 * 24 22 17 41 41 H 1.08998 * 117.51511 * 2.97007 * 24 22 17 42 42 H 1.09002 * 110.36136 * 322.92496 * 25 9 7 43 43 H 1.08997 * 110.37102 * 85.24863 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2055 0.1151 9 7 1.3334 -2.3836 -0.1442 10 6 -0.1282 -2.5323 -0.2011 11 6 -0.4322 -4.0325 -0.3978 12 6 0.8913 -4.5761 -1.0044 13 1 0.9264 -4.4018 -2.0798 14 7 1.0651 -5.9985 -0.6998 15 6 1.9210 -6.7437 -1.4268 16 8 2.5470 -6.2368 -2.3335 17 6 2.0995 -8.2070 -1.1139 18 1 1.2042 -8.5975 -0.6300 19 6 2.3875 -8.9947 -2.4101 20 6 3.4195 -10.0686 -1.9804 21 6 4.3086 -9.3057 -0.9656 22 6 3.3194 -8.4061 -0.2042 23 6 3.1621 -8.5239 1.3088 24 6 3.8199 -7.2834 0.6992 25 6 1.9494 -3.7173 -0.2679 26 1 -0.4850 0.8401 0.0004 27 1 -0.5730 -2.1830 0.7306 28 1 -0.5266 -1.9604 -1.0391 29 1 -0.6432 -4.5118 0.5582 30 1 -1.2620 -4.1703 -1.0909 31 1 0.5642 -6.4040 0.0252 32 1 1.4771 -9.4660 -2.7803 33 1 2.8139 -8.3382 -3.1686 34 1 4.0081 -10.4023 -2.8349 35 1 2.9242 -10.9130 -1.5012 36 1 5.0510 -8.7015 -1.4870 37 1 4.7956 -10.0017 -0.2826 38 1 2.1594 -8.4110 1.7211 39 1 3.8074 -9.2321 1.8285 40 1 4.8980 -7.1755 0.8180 41 1 3.2501 -6.3543 0.7105 42 1 2.8659 -3.6588 -0.8550 43 1 2.1556 -4.1329 0.7184 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014928006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:44 Heat of formation + Delta-G solvation = 3.229099 kcal Electronic energy + Delta-G solvation = -22342.417883 eV Core-core repulsion = 19195.346749 eV Total energy + Delta-G solvation = -3147.071134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45368 -38.31479 -36.97400 -34.35985 -33.83840 -31.89307 -29.69520 -28.96183 -27.03053 -25.81915 -24.40273 -22.58995 -21.71620 -20.55064 -20.34096 -19.90804 -18.76849 -17.11238 -16.76918 -15.95642 -15.75761 -15.14688 -14.60642 -14.50099 -14.34698 -13.88491 -13.50507 -12.98448 -12.88597 -12.59830 -12.42232 -12.20643 -11.81210 -11.67473 -11.54708 -11.23823 -11.06959 -10.93590 -10.88448 -10.75901 -10.69539 -10.37584 -10.34320 -10.08644 -10.02792 -9.89645 -9.72168 -9.31675 -8.69488 -8.55800 -6.82277 -5.71523 -3.03601 2.83074 3.29512 3.42699 3.48077 3.49614 3.74744 4.22220 4.45549 4.52732 4.70648 4.73808 4.92891 5.07608 5.11309 5.26573 5.31834 5.44642 5.46292 5.52822 5.61020 5.62099 5.68173 5.75488 5.76411 5.82277 5.87225 5.91577 5.95745 6.02993 6.07785 6.20538 6.24483 6.35409 6.42407 6.63787 6.73532 7.00943 7.52737 7.60424 7.75806 7.83969 8.25939 8.49126 9.22857 9.83090 10.48564 11.40824 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.003934 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.188962 B = 7114.937681 C = 7372.033619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.128 3.872 13 H 0.092 0.908 14 N -0.718 5.718 15 C 0.519 3.481 16 O -0.535 6.535 17 C -0.076 4.076 18 H 0.088 0.912 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.166 4.166 24 C -0.169 4.169 25 C 0.131 3.869 26 H 0.252 0.748 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -21.165 0.265 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.023 3.977 13 H 0.110 0.890 14 N -0.369 5.369 15 C 0.305 3.695 16 O -0.411 6.411 17 C -0.098 4.098 18 H 0.107 0.893 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.203 4.203 24 C -0.206 4.206 25 C 0.004 3.996 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.229 0.771 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.061 0.939 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.834 -20.541 -0.384 20.739 hybrid contribution 0.082 0.797 0.522 0.956 sum 2.917 -19.744 0.138 19.958 Atomic orbital electron populations 1.69964 1.04917 1.25061 1.56969 1.24815 0.95717 0.97650 1.02138 0.86108 0.78697 0.83509 0.77544 1.21564 1.21770 1.20612 1.19076 0.91195 0.82455 1.42841 0.90381 1.44389 1.01592 1.00908 1.86153 1.21144 0.84671 0.87728 1.01157 1.23206 0.95684 1.00305 0.99563 1.22325 0.96786 0.78161 1.00475 0.88990 1.46132 1.44221 1.10691 1.35834 1.20434 0.78946 0.88352 0.81779 1.90687 1.46029 1.73576 1.30837 1.21419 0.98177 0.92725 0.97481 0.89344 1.22369 0.99392 0.97055 0.96117 1.22449 0.97180 0.97399 0.98634 1.21870 0.96566 0.96893 0.97060 1.21502 0.97170 1.02246 0.90963 1.23032 1.02360 1.01047 0.93829 1.23063 1.01392 0.93482 1.02629 1.21812 0.95040 0.86621 0.96171 0.93753 0.93818 0.93112 0.92100 0.91611 0.77124 0.91331 0.89465 0.91262 0.91451 0.90883 0.91542 0.88720 0.88626 0.88562 0.88061 0.93854 0.96497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.36 55.49 0.57 -26.69 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.49 29.56 -169.99 -5.02 17.47 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.52 10.27 -15.06 -0.15 -6.68 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 9 N -0.60 -15.83 3.39 -170.08 -0.58 -16.40 16 10 C 0.18 4.32 5.38 -3.06 -0.02 4.30 16 11 C -0.15 -2.69 6.60 -24.76 -0.16 -2.85 16 12 C 0.13 2.35 3.31 -65.64 -0.22 2.13 16 13 H 0.09 1.89 7.73 -51.93 -0.40 1.49 16 14 N -0.72 -10.36 4.96 -51.60 -0.26 -10.62 16 15 C 0.52 7.80 5.58 -10.99 -0.06 7.74 16 16 O -0.54 -10.33 15.53 5.56 0.09 -10.24 16 17 C -0.08 -0.85 3.15 -90.80 -0.29 -1.14 16 18 H 0.09 0.80 8.13 -51.92 -0.42 0.38 16 19 C -0.11 -1.17 6.33 -24.94 -0.16 -1.32 16 20 C -0.12 -1.02 6.91 -24.62 -0.17 -1.19 16 21 C -0.09 -0.82 6.58 -25.23 -0.17 -0.99 16 22 C -0.12 -1.26 2.26 -154.26 -0.35 -1.61 16 23 C -0.17 -1.54 10.23 -26.91 -0.28 -1.81 16 24 C -0.17 -2.00 9.63 -26.92 -0.26 -2.26 16 25 C 0.13 2.87 6.93 -2.53 -0.02 2.86 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.04 1.16 7.61 -51.93 -0.40 0.76 16 28 H 0.05 1.36 7.29 -51.93 -0.38 0.98 16 29 H 0.06 0.98 8.00 -51.93 -0.42 0.56 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 4.53 8.51 -40.82 -0.35 4.19 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.12 6.93 -51.93 -0.36 0.76 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.10 1.42 7.08 -51.93 -0.37 1.05 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -32.37 340.72 -9.73 -42.10 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.28 Total: 2.36 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.39 Total: -3.11 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.26 Total: -53.71 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.37 -9.73 -42.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014928006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.332 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds