Wall clock time and date at job start Tue Mar 31 2020 00:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47336 * 274.98388 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.98887 * 3 2 1 6 6 H 1.48508 * 109.47033 * 154.98580 * 3 2 1 7 7 C 1.38812 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99671 * 187.03447 * 7 2 1 9 9 N 1.36935 * 119.99721 * 7.03803 * 7 2 1 10 10 C 1.47022 * 125.64936 * 354.82888 * 9 7 2 11 11 C 1.54326 * 107.40188 * 178.90068 * 10 9 7 12 12 C 1.55406 * 102.82760 * 337.97911 * 11 10 9 13 13 H 1.08994 * 110.89286 * 277.26582 * 12 11 10 14 14 N 1.46504 * 111.06796 * 153.48319 * 12 11 10 15 15 C 1.34778 * 119.99782 * 161.21274 * 14 12 11 16 16 O 1.21280 * 120.00046 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00348 * 180.02562 * 15 14 12 18 18 H 1.09008 * 110.05002 * 25.47169 * 17 15 14 19 19 C 1.54385 * 110.07442 * 146.95684 * 17 15 14 20 20 C 1.55010 * 104.18128 * 142.76329 * 19 17 15 21 21 C 1.54991 * 102.84999 * 322.33884 * 20 19 17 22 22 C 1.53476 * 110.06934 * 263.98814 * 17 15 14 23 23 C 1.52571 * 121.05577 * 96.54135 * 22 17 15 24 24 C 1.52546 * 121.08649 * 24.82795 * 22 17 15 25 25 C 1.47426 * 125.64858 * 174.87859 * 9 7 2 26 26 H 0.97001 * 119.99980 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.88609 * 298.39776 * 10 9 7 28 28 H 1.08996 * 109.88010 * 59.41027 * 10 9 7 29 29 H 1.09001 * 110.71821 * 96.24959 * 11 10 9 30 30 H 1.08991 * 110.72406 * 219.52421 * 11 10 9 31 31 H 0.96998 * 120.00230 * 341.20822 * 14 12 11 32 32 H 1.08996 * 110.48538 * 261.48589 * 19 17 15 33 33 H 1.08999 * 110.48017 * 24.11661 * 19 17 15 34 34 H 1.08996 * 110.75405 * 203.98331 * 20 19 17 35 35 H 1.09000 * 110.85558 * 80.73975 * 20 19 17 36 36 H 1.09000 * 110.51055 * 278.89101 * 21 20 19 37 37 H 1.09003 * 110.62901 * 156.24407 * 21 20 19 38 38 H 1.08998 * 117.51034 * 356.97435 * 23 22 17 39 39 H 1.08997 * 117.51263 * 142.05879 * 23 22 17 40 40 H 1.09000 * 117.51098 * 217.88590 * 24 22 17 41 41 H 1.08998 * 117.51511 * 2.97007 * 24 22 17 42 42 H 1.09002 * 110.36136 * 322.92496 * 25 9 7 43 43 H 1.08997 * 110.37102 * 85.24863 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2055 0.1151 9 7 1.3334 -2.3836 -0.1442 10 6 -0.1282 -2.5323 -0.2011 11 6 -0.4322 -4.0325 -0.3978 12 6 0.8913 -4.5761 -1.0044 13 1 0.9264 -4.4018 -2.0798 14 7 1.0651 -5.9985 -0.6998 15 6 1.9210 -6.7437 -1.4268 16 8 2.5470 -6.2368 -2.3335 17 6 2.0995 -8.2070 -1.1139 18 1 1.2042 -8.5975 -0.6300 19 6 2.3875 -8.9947 -2.4101 20 6 3.4195 -10.0686 -1.9804 21 6 4.3086 -9.3057 -0.9656 22 6 3.3194 -8.4061 -0.2042 23 6 3.1621 -8.5239 1.3088 24 6 3.8199 -7.2834 0.6992 25 6 1.9494 -3.7173 -0.2679 26 1 -0.4850 0.8401 0.0004 27 1 -0.5730 -2.1830 0.7306 28 1 -0.5266 -1.9604 -1.0391 29 1 -0.6432 -4.5118 0.5582 30 1 -1.2620 -4.1703 -1.0909 31 1 0.5642 -6.4040 0.0252 32 1 1.4771 -9.4660 -2.7803 33 1 2.8139 -8.3382 -3.1686 34 1 4.0081 -10.4023 -2.8349 35 1 2.9242 -10.9130 -1.5012 36 1 5.0510 -8.7015 -1.4870 37 1 4.7956 -10.0017 -0.2826 38 1 2.1594 -8.4110 1.7211 39 1 3.8074 -9.2321 1.8285 40 1 4.8980 -7.1755 0.8180 41 1 3.2501 -6.3543 0.7105 42 1 2.8659 -3.6588 -0.8550 43 1 2.1556 -4.1329 0.7184 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014928006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:43 Heat of formation + Delta-G solvation = -17.093183 kcal Electronic energy + Delta-G solvation = -22343.299123 eV Core-core repulsion = 19195.346749 eV Total energy + Delta-G solvation = -3147.952374 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54499 -39.59700 -38.48477 -35.68990 -34.95256 -33.77918 -31.22065 -30.33265 -28.66572 -26.83321 -26.23952 -23.45447 -22.89784 -22.10004 -21.59473 -21.35486 -19.82625 -18.94714 -18.05604 -17.31889 -16.70531 -16.67848 -16.16899 -15.94812 -15.49237 -15.35723 -14.67954 -14.45827 -14.21647 -14.05013 -13.77886 -13.58890 -13.41831 -12.99548 -12.81433 -12.54837 -12.41889 -12.34990 -12.14742 -12.04584 -11.94765 -11.85891 -11.78724 -11.62103 -11.50207 -11.14773 -11.07582 -10.72944 -10.40661 -10.09638 -8.95165 -7.90957 -5.25927 1.42958 1.45785 1.54313 1.63896 2.10867 2.47404 2.86072 3.28017 3.40977 3.62815 3.66045 3.70638 3.89130 3.94974 4.04237 4.10332 4.18186 4.30383 4.36586 4.49598 4.55296 4.69366 4.70832 4.78770 4.81023 4.84518 4.94298 4.94922 5.03576 5.04592 5.11477 5.18478 5.20704 5.24939 5.30051 5.38750 5.48291 5.55433 5.60952 5.70249 6.15353 6.61249 7.05884 7.31113 7.71046 8.35006 9.19610 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030094 B = 0.003934 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.188962 B = 7114.937681 C = 7372.033619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.626 5.626 10 C 0.183 3.817 11 C -0.126 4.126 12 C 0.146 3.854 13 H 0.068 0.932 14 N -0.703 5.703 15 C 0.517 3.483 16 O -0.584 6.584 17 C -0.071 4.071 18 H 0.122 0.878 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.089 4.089 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.199 4.199 25 C 0.133 3.867 26 H 0.250 0.750 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.415 0.585 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.019 0.981 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -23.935 1.299 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.353 5.353 10 C 0.057 3.943 11 C -0.165 4.165 12 C 0.040 3.960 13 H 0.087 0.913 14 N -0.355 5.355 15 C 0.306 3.694 16 O -0.463 6.463 17 C -0.092 4.092 18 H 0.140 0.860 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.173 4.173 24 C -0.236 4.236 25 C 0.006 3.994 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.037 0.963 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.400 -23.363 0.676 23.495 hybrid contribution 0.271 1.666 0.196 1.699 sum 2.670 -21.697 0.872 21.878 Atomic orbital electron populations 1.70163 1.06153 1.25527 1.57523 1.25642 0.96685 1.00848 1.02040 0.85079 0.77860 0.79138 0.77371 1.21428 1.21442 1.19469 1.19402 0.91495 0.84006 1.43103 0.90704 1.44675 1.02742 1.01739 1.86099 1.20955 0.83439 0.91617 0.98249 1.23023 0.95936 0.95662 1.01833 1.21795 0.95573 0.80081 0.98570 0.91338 1.45900 1.44434 1.08750 1.36409 1.21240 0.77623 0.89974 0.80607 1.90675 1.47765 1.74872 1.33038 1.21519 0.99917 0.89384 0.98372 0.86015 1.22394 1.00759 0.97122 0.94984 1.22446 0.96460 0.97181 0.98680 1.21908 0.96261 0.96942 0.97531 1.21617 0.97096 1.01686 0.91991 1.23148 1.03003 0.98685 0.92441 1.22999 1.01125 0.93639 1.05808 1.21876 0.95080 0.85811 0.96625 0.94106 0.96584 0.96656 0.88944 0.89071 0.74768 0.89392 0.92698 0.90642 0.89080 0.92958 0.89534 0.87202 0.86722 0.89050 0.90674 0.96294 0.95427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 10.36 21.65 0.22 -57.28 16 2 C -0.06 -3.43 5.48 84.86 0.46 -2.97 16 3 Si 0.98 47.08 29.56 68.60 2.03 49.11 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.25 -14.86 10.27 84.03 0.86 -14.00 16 8 H 0.08 4.33 7.84 -2.91 -0.02 4.31 16 9 N -0.63 -33.86 3.39 -692.00 -2.35 -36.21 16 10 C 0.18 9.06 5.38 86.73 0.47 9.53 16 11 C -0.13 -4.38 6.60 31.87 0.21 -4.17 16 12 C 0.15 5.36 3.31 46.47 0.15 5.52 16 13 H 0.07 2.88 7.73 -2.39 -0.02 2.86 16 14 N -0.70 -19.18 4.96 -435.56 -2.16 -21.34 16 15 C 0.52 15.14 5.58 87.66 0.49 15.63 16 16 O -0.58 -23.20 15.53 -3.03 -0.05 -23.24 16 17 C -0.07 -1.40 3.15 -10.91 -0.03 -1.44 16 18 H 0.12 1.63 8.13 -2.38 -0.02 1.61 16 19 C -0.11 -2.16 6.33 31.75 0.20 -1.96 16 20 C -0.11 -1.55 6.91 31.96 0.22 -1.33 16 21 C -0.09 -1.50 6.58 31.57 0.21 -1.30 16 22 C -0.12 -2.34 2.26 -52.02 -0.12 -2.46 16 23 C -0.14 -2.04 10.23 30.48 0.31 -1.73 16 24 C -0.20 -4.53 9.63 30.47 0.29 -4.23 16 25 C 0.13 5.98 6.93 86.85 0.60 6.58 16 26 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 28 H 0.02 0.85 7.29 -2.39 -0.02 0.83 16 29 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16 30 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.41 8.14 8.51 -92.71 -0.79 7.35 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.41 6.93 -2.39 -0.02 1.39 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.11 8.11 -2.39 -0.02 1.09 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.07 2.10 7.08 -2.39 -0.02 2.08 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -74.51 340.72 2.23 -72.28 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.20 Total: 15.01 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 4.33 Total: 1.68 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.28 Total: -114.83 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -74.51 2.23 -72.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014928006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.187 kcal (2) G-P(sol) polarization free energy of solvation -74.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds