Wall clock time and date at job start Tue Mar 31 2020 00:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99539 * 2 1 4 4 H 1.48501 * 109.46806 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46842 * 299.99595 * 3 2 1 6 6 H 1.48496 * 109.47191 * 59.99578 * 3 2 1 7 7 C 1.38809 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64744 * 359.96620 * 9 7 2 11 11 C 1.55126 * 104.93964 * 204.03490 * 10 9 7 12 12 C 1.55153 * 101.48507 * 323.21747 * 11 10 9 13 13 H 1.08994 * 110.72051 * 276.83273 * 12 11 10 14 14 N 1.46502 * 110.71976 * 153.73524 * 12 11 10 15 15 C 1.34775 * 119.99887 * 157.44103 * 14 12 11 16 16 O 1.21277 * 120.00125 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99757 * 180.02562 * 15 14 12 18 18 H 1.08999 * 110.09934 * 334.26508 * 17 15 14 19 19 C 1.54389 * 110.07060 * 212.75103 * 17 15 14 20 20 C 1.55075 * 104.30936 * 217.30533 * 19 17 15 21 21 C 1.54985 * 102.75019 * 37.53819 * 20 19 17 22 22 C 1.53478 * 110.07156 * 95.78159 * 17 15 14 23 23 C 1.52572 * 121.05437 * 263.45147 * 22 17 15 24 24 C 1.52558 * 121.08761 * 335.16499 * 22 17 15 25 25 C 1.47023 * 125.64841 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00596 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.36625 * 322.99381 * 10 9 7 28 28 H 1.08998 * 110.37569 * 85.20798 * 10 9 7 29 29 H 1.09003 * 111.16196 * 205.12610 * 11 10 9 30 30 H 1.08997 * 110.93677 * 81.21363 * 11 10 9 31 31 H 0.97003 * 120.00043 * 337.44237 * 14 12 11 32 32 H 1.09007 * 110.47919 * 335.89170 * 19 17 15 33 33 H 1.08995 * 110.48310 * 98.39149 * 19 17 15 34 34 H 1.08995 * 110.68179 * 279.26719 * 20 19 17 35 35 H 1.09000 * 110.86183 * 155.88913 * 20 19 17 36 36 H 1.09006 * 110.50837 * 203.89630 * 21 20 19 37 37 H 1.09002 * 110.51411 * 81.32550 * 21 20 19 38 38 H 1.09003 * 117.51240 * 217.93314 * 23 22 17 39 39 H 1.09002 * 117.50961 * 3.03024 * 23 22 17 40 40 H 1.08998 * 117.50372 * 357.02744 * 24 22 17 41 41 H 1.08996 * 117.51358 * 142.07580 * 24 22 17 42 42 H 1.09008 * 109.87609 * 59.49449 * 25 9 7 43 43 H 1.08995 * 109.88617 * 298.33305 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1414 -2.5332 0.0030 11 6 -0.4040 -3.9346 0.6142 12 6 0.7787 -4.7524 0.0314 13 1 0.5474 -5.1014 -0.9749 14 7 1.1096 -5.8803 0.9058 15 6 1.7592 -6.9511 0.4079 16 8 2.0701 -6.9807 -0.7640 17 6 2.0991 -8.1114 1.3073 18 1 2.1799 -7.7735 2.3404 19 6 3.4257 -8.7601 0.8568 20 6 3.2059 -10.2785 1.0822 21 6 1.7215 -10.4725 0.6809 22 6 1.0233 -9.2000 1.1919 23 6 -0.1196 -9.2870 2.1988 24 6 -0.3983 -8.8596 0.7555 25 6 1.9320 -3.7275 0.0017 26 1 -0.4851 0.8400 0.0004 27 1 -0.5987 -1.7583 0.6182 28 1 -0.5283 -2.4860 -1.0149 29 1 -1.3600 -4.3371 0.2792 30 1 -0.3563 -3.9000 1.7026 31 1 0.8613 -5.8564 1.8432 32 1 3.6111 -8.5562 -0.1979 33 1 4.2537 -8.3973 1.4657 34 1 3.3599 -10.5385 2.1294 35 1 3.8600 -10.8654 0.4373 36 1 1.3071 -11.3564 1.1660 37 1 1.6257 -10.5521 -0.4020 38 1 -0.4490 -10.2808 2.5021 39 1 -0.1706 -8.5185 2.9702 40 1 -0.6325 -7.8100 0.5775 41 1 -0.9107 -9.5719 0.1089 42 1 2.5596 -3.8501 0.8845 43 1 2.5274 -3.8650 -0.9008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014928011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:46 Heat of formation + Delta-G solvation = 4.461860 kcal Electronic energy + Delta-G solvation = -22205.351680 eV Core-core repulsion = 19058.334002 eV Total energy + Delta-G solvation = -3147.017677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47380 -38.35814 -36.96903 -34.39105 -33.84924 -31.89780 -29.71594 -28.95212 -27.00979 -25.85152 -24.42697 -22.66500 -21.69069 -20.62536 -20.42795 -19.76573 -18.80032 -17.11367 -16.73028 -15.98200 -15.90122 -15.20733 -14.69497 -14.56706 -14.18672 -13.93640 -13.54721 -13.17477 -12.84270 -12.62483 -12.42650 -11.93466 -11.70694 -11.63232 -11.62187 -11.26034 -11.13738 -11.00986 -10.92970 -10.80959 -10.72993 -10.50361 -10.42122 -10.10749 -10.07372 -9.82170 -9.59446 -9.32786 -8.70446 -8.65665 -6.83686 -5.66046 -3.07445 2.82008 3.27770 3.40223 3.45937 3.48465 3.70755 4.19106 4.41887 4.50046 4.66165 4.68743 4.89810 5.05928 5.09923 5.27240 5.38387 5.43639 5.46148 5.46630 5.53473 5.57923 5.66026 5.71361 5.80211 5.81193 5.83008 5.88858 5.93259 5.97221 6.01583 6.20740 6.25176 6.40981 6.48556 6.57815 6.76325 7.03970 7.47370 7.62400 7.75295 7.84848 8.33890 8.48205 9.21716 9.82291 10.46519 11.38282 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036029 B = 0.003696 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.957551 B = 7574.330515 C = 8052.312969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.154 3.846 11 C -0.149 4.149 12 C 0.131 3.869 13 H 0.090 0.910 14 N -0.717 5.717 15 C 0.520 3.480 16 O -0.538 6.538 17 C -0.077 4.077 18 H 0.090 0.910 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.166 4.166 24 C -0.170 4.170 25 C 0.129 3.871 26 H 0.252 0.748 27 H 0.110 0.890 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.396 0.604 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.025 0.975 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -20.505 5.982 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.189 4.189 12 C 0.026 3.974 13 H 0.108 0.892 14 N -0.368 5.368 15 C 0.306 3.694 16 O -0.414 6.414 17 C -0.099 4.099 18 H 0.108 0.892 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.203 4.203 24 C -0.207 4.207 25 C 0.002 3.998 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.042 0.958 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.513 -20.281 5.113 20.922 hybrid contribution 0.269 0.951 0.441 1.082 sum 0.782 -19.331 5.553 20.128 Atomic orbital electron populations 1.69780 1.04884 1.24683 1.57912 1.24784 0.95749 0.97708 1.02479 0.85980 0.78679 0.83516 0.77242 1.20522 1.21718 1.21737 1.19145 0.90590 0.82364 1.42742 0.90420 1.44460 1.01887 0.99702 1.86975 1.21964 0.84862 0.91864 0.98467 1.23350 0.95964 0.99202 1.00339 1.22081 0.96048 0.84999 0.94252 0.89192 1.46186 1.59014 1.18210 1.13341 1.20428 0.77254 0.83015 0.88727 1.90672 1.52941 1.80534 1.17296 1.21425 0.95983 0.92980 0.99486 0.89225 1.22383 0.94638 0.94630 1.03342 1.22466 0.95977 0.96003 1.01230 1.21865 0.94801 0.94775 1.00916 1.21513 0.89085 0.96453 1.04691 1.23045 1.01533 1.02857 0.92823 1.23023 0.97400 1.02790 0.97466 1.21599 0.93993 0.85891 0.98313 0.93761 0.87227 0.96715 0.91796 0.91747 0.76968 0.89480 0.91212 0.91416 0.91184 0.91569 0.90929 0.88588 0.88622 0.88346 0.88618 0.95757 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.84 3.40 -169.94 -0.58 -16.42 16 10 C 0.15 3.73 5.89 -2.41 -0.01 3.71 16 11 C -0.15 -2.74 6.73 -24.47 -0.16 -2.91 16 12 C 0.13 2.41 3.27 -66.10 -0.22 2.20 16 13 H 0.09 1.79 7.62 -51.93 -0.40 1.39 16 14 N -0.72 -10.58 4.83 -52.04 -0.25 -10.83 16 15 C 0.52 7.86 5.59 -10.99 -0.06 7.80 16 16 O -0.54 -10.30 15.46 5.56 0.09 -10.21 16 17 C -0.08 -0.88 3.16 -90.80 -0.29 -1.16 16 18 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 19 C -0.11 -1.22 6.33 -24.91 -0.16 -1.37 16 20 C -0.12 -1.02 6.93 -24.59 -0.17 -1.19 16 21 C -0.09 -0.78 6.57 -25.23 -0.17 -0.95 16 22 C -0.12 -1.18 2.26 -154.25 -0.35 -1.53 16 23 C -0.17 -1.41 10.23 -26.90 -0.28 -1.68 16 24 C -0.17 -1.77 9.63 -26.91 -0.26 -2.03 16 25 C 0.13 2.89 7.00 -3.06 -0.02 2.87 16 26 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.11 2.95 5.87 -51.93 -0.31 2.65 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.11 8.00 -51.93 -0.42 0.70 16 31 H 0.40 4.81 8.53 -40.82 -0.35 4.46 16 32 H 0.09 1.15 6.92 -51.93 -0.36 0.79 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.18 7.07 -51.93 -0.37 0.81 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.54 8.03 -51.92 -0.42 0.12 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -31.90 339.84 -9.70 -41.60 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.22 Total: 2.99 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.39 Total: -3.11 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.27 Total: -53.63 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.90 -9.70 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014928011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.064 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds