Wall clock time and date at job start Tue Mar 31 2020 00:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99539 * 2 1 4 4 H 1.48501 * 109.46806 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46842 * 299.99595 * 3 2 1 6 6 H 1.48496 * 109.47191 * 59.99578 * 3 2 1 7 7 C 1.38809 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00472 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.64744 * 359.96620 * 9 7 2 11 11 C 1.55126 * 104.93964 * 204.03490 * 10 9 7 12 12 C 1.55153 * 101.48507 * 323.21747 * 11 10 9 13 13 H 1.08994 * 110.72051 * 276.83273 * 12 11 10 14 14 N 1.46502 * 110.71976 * 153.73524 * 12 11 10 15 15 C 1.34775 * 119.99887 * 157.44103 * 14 12 11 16 16 O 1.21277 * 120.00125 * 0.02562 * 15 14 12 17 17 C 1.50697 * 119.99757 * 180.02562 * 15 14 12 18 18 H 1.08999 * 110.09934 * 334.26508 * 17 15 14 19 19 C 1.54389 * 110.07060 * 212.75103 * 17 15 14 20 20 C 1.55075 * 104.30936 * 217.30533 * 19 17 15 21 21 C 1.54985 * 102.75019 * 37.53819 * 20 19 17 22 22 C 1.53478 * 110.07156 * 95.78159 * 17 15 14 23 23 C 1.52572 * 121.05437 * 263.45147 * 22 17 15 24 24 C 1.52558 * 121.08761 * 335.16499 * 22 17 15 25 25 C 1.47023 * 125.64841 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00596 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.36625 * 322.99381 * 10 9 7 28 28 H 1.08998 * 110.37569 * 85.20798 * 10 9 7 29 29 H 1.09003 * 111.16196 * 205.12610 * 11 10 9 30 30 H 1.08997 * 110.93677 * 81.21363 * 11 10 9 31 31 H 0.97003 * 120.00043 * 337.44237 * 14 12 11 32 32 H 1.09007 * 110.47919 * 335.89170 * 19 17 15 33 33 H 1.08995 * 110.48310 * 98.39149 * 19 17 15 34 34 H 1.08995 * 110.68179 * 279.26719 * 20 19 17 35 35 H 1.09000 * 110.86183 * 155.88913 * 20 19 17 36 36 H 1.09006 * 110.50837 * 203.89630 * 21 20 19 37 37 H 1.09002 * 110.51411 * 81.32550 * 21 20 19 38 38 H 1.09003 * 117.51240 * 217.93314 * 23 22 17 39 39 H 1.09002 * 117.50961 * 3.03024 * 23 22 17 40 40 H 1.08998 * 117.50372 * 357.02744 * 24 22 17 41 41 H 1.08996 * 117.51358 * 142.07580 * 24 22 17 42 42 H 1.09008 * 109.87609 * 59.49449 * 25 9 7 43 43 H 1.08995 * 109.88617 * 298.33305 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1414 -2.5332 0.0030 11 6 -0.4040 -3.9346 0.6142 12 6 0.7787 -4.7524 0.0314 13 1 0.5474 -5.1014 -0.9749 14 7 1.1096 -5.8803 0.9058 15 6 1.7592 -6.9511 0.4079 16 8 2.0701 -6.9807 -0.7640 17 6 2.0991 -8.1114 1.3073 18 1 2.1799 -7.7735 2.3404 19 6 3.4257 -8.7601 0.8568 20 6 3.2059 -10.2785 1.0822 21 6 1.7215 -10.4725 0.6809 22 6 1.0233 -9.2000 1.1919 23 6 -0.1196 -9.2870 2.1988 24 6 -0.3983 -8.8596 0.7555 25 6 1.9320 -3.7275 0.0017 26 1 -0.4851 0.8400 0.0004 27 1 -0.5987 -1.7583 0.6182 28 1 -0.5283 -2.4860 -1.0149 29 1 -1.3600 -4.3371 0.2792 30 1 -0.3563 -3.9000 1.7026 31 1 0.8613 -5.8564 1.8432 32 1 3.6111 -8.5562 -0.1979 33 1 4.2537 -8.3973 1.4657 34 1 3.3599 -10.5385 2.1294 35 1 3.8600 -10.8654 0.4373 36 1 1.3071 -11.3564 1.1660 37 1 1.6257 -10.5521 -0.4020 38 1 -0.4490 -10.2808 2.5021 39 1 -0.1706 -8.5185 2.9702 40 1 -0.6325 -7.8100 0.5775 41 1 -0.9107 -9.5719 0.1089 42 1 2.5596 -3.8501 0.8845 43 1 2.5274 -3.8650 -0.9008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014928011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:45 Heat of formation + Delta-G solvation = -15.014684 kcal Electronic energy + Delta-G solvation = -22206.196246 eV Core-core repulsion = 19058.334002 eV Total energy + Delta-G solvation = -3147.862244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55398 -39.61937 -38.47013 -35.70058 -34.95225 -33.75913 -31.23412 -30.31684 -28.65347 -26.84742 -26.24113 -23.39794 -22.88322 -22.24625 -21.56124 -21.27350 -19.82263 -18.95795 -18.02426 -17.38167 -16.81095 -16.71451 -16.16390 -15.88099 -15.54913 -15.20257 -14.92880 -14.42965 -14.27352 -13.83414 -13.62388 -13.50111 -13.42351 -13.03562 -12.76930 -12.62739 -12.49250 -12.35957 -12.22201 -12.00657 -11.95095 -11.87408 -11.80615 -11.51933 -11.45540 -11.14265 -11.07698 -10.79462 -10.39361 -10.11688 -8.94932 -7.81547 -5.27025 1.45565 1.46909 1.57342 1.62332 2.11057 2.48054 2.87307 3.28806 3.40847 3.63980 3.65378 3.73520 3.89525 3.91756 4.01794 4.11300 4.20271 4.30522 4.35812 4.49321 4.55352 4.68214 4.71478 4.79889 4.81701 4.87023 4.94594 4.97219 5.01433 5.03557 5.09503 5.17419 5.19773 5.26076 5.29877 5.41694 5.46956 5.53763 5.58239 5.74620 6.26465 6.58915 7.06893 7.28106 7.72021 8.35358 9.20459 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036029 B = 0.003696 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.957551 B = 7574.330515 C = 8052.312969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.983 3.017 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.623 5.623 10 C 0.153 3.847 11 C -0.126 4.126 12 C 0.149 3.851 13 H 0.074 0.926 14 N -0.704 5.704 15 C 0.519 3.481 16 O -0.583 6.583 17 C -0.072 4.072 18 H 0.115 0.885 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.087 4.087 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.190 4.190 25 C 0.129 3.871 26 H 0.250 0.750 27 H 0.083 0.917 28 H -0.013 1.013 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.030 0.970 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -22.165 8.242 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.811 3.189 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.164 4.164 12 C 0.043 3.957 13 H 0.092 0.908 14 N -0.356 5.356 15 C 0.307 3.693 16 O -0.463 6.463 17 C -0.093 4.093 18 H 0.133 0.867 19 C -0.155 4.155 20 C -0.148 4.148 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.176 4.176 24 C -0.227 4.227 25 C 0.002 3.998 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.005 0.995 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.251 0.749 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.048 0.952 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 0.572 -21.975 7.410 23.198 hybrid contribution 0.266 1.468 -0.323 1.527 sum 0.838 -20.507 7.087 21.713 Atomic orbital electron populations 1.70013 1.06099 1.25219 1.58205 1.25628 0.96723 1.00873 1.02223 0.84952 0.77907 0.79094 0.76989 1.19476 1.21828 1.21158 1.19462 0.90923 0.83770 1.43254 0.90648 1.44742 1.02901 1.00473 1.86897 1.21803 0.83799 0.94773 0.96840 1.23143 0.97061 0.95153 1.01091 1.21602 0.94406 0.85202 0.94465 0.90786 1.45985 1.58873 1.16990 1.13735 1.21202 0.75907 0.83569 0.88628 1.90660 1.54606 1.81408 1.19615 1.21502 0.96681 0.91564 0.99590 0.86689 1.22410 0.94838 0.96670 1.01579 1.22461 0.95710 0.94045 1.02615 1.21886 0.95215 0.95182 1.00124 1.21595 0.88774 0.96243 1.06147 1.23153 0.98718 1.04088 0.91632 1.23020 0.98054 1.01891 0.99722 1.21678 0.95229 0.85585 0.97275 0.94048 0.89864 0.99499 0.88966 0.89749 0.74923 0.92617 0.90106 0.89355 0.90560 0.89452 0.92608 0.86702 0.87451 0.90156 0.88474 0.95248 0.97895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.29 10.09 21.65 0.22 -56.07 16 2 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 3 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.25 -14.25 10.27 84.03 0.86 -13.39 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -33.51 3.40 -691.55 -2.35 -35.85 16 10 C 0.15 7.59 5.89 86.93 0.51 8.10 16 11 C -0.13 -4.47 6.73 32.06 0.22 -4.25 16 12 C 0.15 5.48 3.27 46.18 0.15 5.63 16 13 H 0.07 3.00 7.62 -2.39 -0.02 2.98 16 14 N -0.70 -19.83 4.83 -436.94 -2.11 -21.94 16 15 C 0.52 15.34 5.59 87.66 0.49 15.83 16 16 O -0.58 -22.89 15.46 -3.02 -0.05 -22.93 16 17 C -0.07 -1.49 3.16 -10.91 -0.03 -1.52 16 18 H 0.12 1.79 8.13 -2.39 -0.02 1.77 16 19 C -0.12 -2.38 6.33 31.78 0.20 -2.18 16 20 C -0.11 -1.61 6.93 31.98 0.22 -1.39 16 21 C -0.09 -1.37 6.57 31.57 0.21 -1.17 16 22 C -0.13 -2.25 2.26 -52.02 -0.12 -2.37 16 23 C -0.14 -1.84 10.23 30.48 0.31 -1.53 16 24 C -0.19 -3.62 9.63 30.48 0.29 -3.33 16 25 C 0.13 5.88 7.00 86.73 0.61 6.49 16 26 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.08 4.60 5.87 -2.39 -0.01 4.58 16 28 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.08 2.70 8.00 -2.39 -0.02 2.68 16 31 H 0.41 8.89 8.53 -92.71 -0.79 8.10 16 32 H 0.06 1.49 6.92 -2.38 -0.02 1.48 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.02 8.11 -2.38 -0.02 1.00 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.82 7.07 -2.39 -0.02 1.81 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.03 1.31 8.03 -2.38 -0.02 1.29 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -71.76 339.84 2.33 -69.44 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.20 Total: 17.33 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.39 Total: 1.84 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.24 Total: -113.86 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.76 2.33 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014928011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.421 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds