Wall clock time and date at job start Tue Mar 31 2020 00:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47573 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47115 * 299.99913 * 3 2 1 6 6 H 1.48501 * 109.47376 * 59.99502 * 3 2 1 7 7 C 1.38817 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00020 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.65098 * 359.97176 * 9 7 2 11 11 C 1.54318 * 107.27550 * 178.97902 * 10 9 7 12 12 C 1.55161 * 102.94278 * 337.80920 * 11 10 9 13 13 H 1.09000 * 111.00308 * 153.61477 * 12 11 10 14 14 N 1.46499 * 111.00246 * 277.42748 * 12 11 10 15 15 C 1.34773 * 119.99973 * 201.81684 * 14 12 11 16 16 O 1.21288 * 119.99881 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00101 * 179.97438 * 15 14 12 18 18 H 1.08996 * 110.05370 * 23.13114 * 17 15 14 19 19 C 1.54387 * 110.07031 * 144.61507 * 17 15 14 20 20 C 1.54922 * 104.22166 * 142.83520 * 19 17 15 21 21 C 1.54990 * 102.82612 * 322.28128 * 20 19 17 22 22 C 1.53485 * 110.11837 * 261.61343 * 17 15 14 23 23 C 1.52567 * 121.05011 * 96.54246 * 22 17 15 24 24 C 1.52548 * 121.08384 * 24.82982 * 22 17 15 25 25 C 1.47525 * 125.63941 * 180.02562 * 9 7 2 26 26 H 0.97002 * 119.99610 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.88038 * 59.56275 * 10 9 7 28 28 H 1.09003 * 109.88054 * 298.40214 * 10 9 7 29 29 H 1.09004 * 110.72530 * 219.44437 * 11 10 9 30 30 H 1.09005 * 110.87380 * 96.24277 * 11 10 9 31 31 H 0.96999 * 120.00021 * 21.81922 * 14 12 11 32 32 H 1.09001 * 110.48154 * 261.52609 * 19 17 15 33 33 H 1.09001 * 110.48142 * 24.02296 * 19 17 15 34 34 H 1.08996 * 110.73907 * 80.62036 * 20 19 17 35 35 H 1.09002 * 110.74051 * 203.76198 * 20 19 17 36 36 H 1.08997 * 110.51085 * 156.21456 * 21 20 19 37 37 H 1.09001 * 110.51070 * 278.79353 * 21 20 19 38 38 H 1.09009 * 117.50981 * 356.97067 * 23 22 17 39 39 H 1.09003 * 117.51227 * 142.06018 * 23 22 17 40 40 H 1.09003 * 117.50627 * 217.87880 * 24 22 17 41 41 H 1.08994 * 117.51718 * 2.96503 * 24 22 17 42 42 H 1.09000 * 110.37193 * 85.26719 * 25 9 7 43 43 H 1.09002 * 110.40678 * 322.91570 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1376 -2.5328 0.0006 11 6 -0.4486 -4.0441 -0.0257 12 6 0.8518 -4.6564 -0.6101 13 1 0.9832 -5.6857 -0.2766 14 7 0.8585 -4.5765 -2.0729 15 6 1.6398 -5.4085 -2.7897 16 8 2.3370 -6.2237 -2.2236 17 6 1.6463 -5.3267 -4.2944 18 1 1.3197 -4.3379 -4.6164 19 6 3.0627 -5.6187 -4.8348 20 6 2.8155 -6.4222 -6.1361 21 6 1.6025 -7.3128 -5.7653 22 6 0.7264 -6.4037 -4.8857 23 6 -0.7098 -6.0791 -5.2853 24 6 -0.4330 -6.9790 -4.0782 25 6 1.9340 -3.7320 0.0016 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5576 -2.0525 -0.8832 28 1 -0.5544 -2.0841 0.9023 29 1 -1.2986 -4.2517 -0.6757 30 1 -0.6335 -4.4201 0.9806 31 1 0.3007 -3.9247 -2.5256 32 1 3.5864 -4.6883 -5.0546 33 1 3.6290 -6.2139 -4.1185 34 1 2.5664 -5.7543 -6.9607 35 1 3.6843 -7.0320 -6.3842 36 1 1.0609 -7.6132 -6.6622 37 1 1.9291 -8.1894 -5.2058 38 1 -1.0713 -5.0697 -5.0884 39 1 -1.1007 -6.5515 -6.1866 40 1 -0.6419 -8.0435 -4.1855 41 1 -0.6126 -6.5619 -3.0874 42 1 2.1665 -4.0424 1.0203 43 1 2.8337 -3.7423 -0.6137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014928017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:48 Heat of formation + Delta-G solvation = -16.122425 kcal Electronic energy + Delta-G solvation = -22583.504615 eV Core-core repulsion = 19435.594336 eV Total energy + Delta-G solvation = -3147.910279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53016 -39.65738 -38.39838 -35.47877 -34.95731 -33.63105 -31.19640 -30.26761 -28.79370 -26.80713 -26.30632 -23.42246 -23.00028 -21.99109 -21.46899 -21.22133 -19.83932 -18.87964 -18.02433 -17.29080 -16.79385 -16.66554 -16.06556 -15.76024 -15.57192 -15.24861 -15.03512 -14.44515 -14.06598 -13.87866 -13.63434 -13.58392 -13.42309 -12.91524 -12.84627 -12.57469 -12.37372 -12.29970 -12.10252 -12.00481 -11.96059 -11.83581 -11.81397 -11.62135 -11.52763 -11.14513 -11.04901 -10.74082 -10.38158 -10.04601 -8.88025 -7.86791 -5.20949 1.44692 1.45459 1.55612 1.65762 2.21692 2.47894 2.88377 3.32392 3.41274 3.63208 3.66732 3.73844 3.89557 3.90728 4.06864 4.11600 4.28338 4.29489 4.35164 4.48769 4.65617 4.68414 4.72895 4.78968 4.81029 4.87557 4.93523 4.97970 5.00624 5.02431 5.08860 5.16451 5.18956 5.25785 5.28871 5.42573 5.46479 5.59214 5.66673 5.75064 6.18275 6.61604 7.10419 7.29080 7.75354 8.39892 9.23449 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.004635 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.019619 B = 6038.893440 C = 6412.547116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.620 5.620 10 C 0.185 3.815 11 C -0.133 4.133 12 C 0.142 3.858 13 H 0.098 0.902 14 N -0.702 5.702 15 C 0.523 3.477 16 O -0.581 6.581 17 C -0.077 4.077 18 H 0.097 0.903 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.083 4.083 22 C -0.125 4.125 23 C -0.147 4.147 24 C -0.181 4.181 25 C 0.123 3.877 26 H 0.248 0.752 27 H 0.021 0.979 28 H 0.009 0.991 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.405 0.595 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -13.865 -13.023 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.803 3.197 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.061 3.939 11 C -0.171 4.171 12 C 0.035 3.965 13 H 0.115 0.885 14 N -0.352 5.352 15 C 0.311 3.689 16 O -0.461 6.461 17 C -0.098 4.098 18 H 0.116 0.884 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.184 4.184 24 C -0.218 4.218 25 C -0.004 4.004 26 H 0.057 0.943 27 H 0.039 0.961 28 H 0.027 0.973 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.240 0.760 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.214 -14.226 -12.597 19.041 hybrid contribution 0.219 1.647 0.495 1.734 sum -0.995 -12.579 -12.102 17.483 Atomic orbital electron populations 1.70155 1.05967 1.25200 1.58196 1.25522 0.96609 1.00519 1.02503 0.85071 0.77977 0.79756 0.76878 1.19670 1.21558 1.21848 1.19389 0.90682 0.83883 1.43160 0.90985 1.44725 1.02458 1.00455 1.87025 1.20938 0.83364 0.91350 0.98278 1.23063 0.96394 0.95622 1.02038 1.21906 0.95813 0.98620 0.80120 0.88458 1.45949 1.45176 1.37482 1.06558 1.20967 0.77995 0.79408 0.90568 1.90617 1.43004 1.39089 1.73385 1.21482 0.98405 1.00673 0.89255 0.88445 1.22361 0.93698 1.01039 0.98183 1.22434 0.98193 0.98114 0.96109 1.21868 0.95256 0.96586 0.98316 1.21576 0.89546 0.98952 1.02518 1.23136 0.95276 1.00947 0.99035 1.22997 1.02226 1.00303 0.96243 1.22061 0.95355 0.85777 0.97174 0.94295 0.96110 0.97307 0.88854 0.89274 0.75988 0.90949 0.92061 0.89883 0.90162 0.89393 0.91942 0.88429 0.86475 0.87807 0.90230 0.95305 0.95644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.62 10.31 21.65 0.22 -55.40 16 2 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 3 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -13.74 10.28 84.04 0.86 -12.87 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -31.82 3.40 -691.71 -2.35 -34.17 16 10 C 0.19 8.76 5.36 86.73 0.47 9.22 16 11 C -0.13 -4.54 6.53 31.78 0.21 -4.33 16 12 C 0.14 5.01 3.37 46.39 0.16 5.17 16 13 H 0.10 3.32 7.63 -2.39 -0.02 3.30 16 14 N -0.70 -22.89 5.06 -435.94 -2.21 -25.09 16 15 C 0.52 16.98 5.52 87.66 0.48 17.46 16 16 O -0.58 -22.75 15.54 -3.05 -0.05 -22.80 16 17 C -0.08 -1.94 3.16 -10.91 -0.03 -1.97 16 18 H 0.10 2.29 8.11 -2.39 -0.02 2.27 16 19 C -0.11 -2.74 6.33 31.72 0.20 -2.54 16 20 C -0.11 -1.91 6.91 31.93 0.22 -1.69 16 21 C -0.08 -1.46 6.58 31.57 0.21 -1.25 16 22 C -0.13 -2.59 2.26 -52.02 -0.12 -2.71 16 23 C -0.15 -2.48 10.23 30.48 0.31 -2.17 16 24 C -0.18 -3.75 9.63 30.47 0.29 -3.46 16 25 C 0.12 5.37 6.94 86.84 0.60 5.97 16 26 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 27 H 0.02 1.07 7.38 -2.38 -0.02 1.05 16 28 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 29 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 31 H 0.41 12.57 8.62 -92.71 -0.80 11.77 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.76 6.97 -2.39 -0.02 1.75 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.93 7.18 -2.39 -0.02 1.91 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.93 340.98 2.16 -65.77 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.19 Total: 21.83 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.33 Total: 2.00 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.33 Total: -114.66 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.93 2.16 -65.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014928017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.648 kcal (2) G-P(sol) polarization free energy of solvation -67.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds