Wall clock time and date at job start Tue Mar 31 2020 00:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47551 * 274.98676 * 3 2 1 5 5 H 1.48498 * 109.47148 * 34.99241 * 3 2 1 6 6 H 1.48502 * 109.47053 * 154.98549 * 3 2 1 7 7 C 1.38814 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00402 * 187.05644 * 7 2 1 9 9 N 1.36941 * 119.99801 * 7.05127 * 7 2 1 10 10 C 1.47424 * 125.64659 * 174.81835 * 9 7 2 11 11 C 1.54909 * 104.82940 * 204.09473 * 10 9 7 12 12 C 1.55160 * 101.58329 * 322.98505 * 11 10 9 13 13 H 1.09004 * 110.71826 * 153.86564 * 12 11 10 14 14 N 1.46501 * 110.72076 * 276.96684 * 12 11 10 15 15 C 1.34783 * 119.99650 * 204.99953 * 14 12 11 16 16 O 1.21278 * 119.99678 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99535 * 180.02562 * 15 14 12 18 18 C 1.53007 * 109.46421 * 179.97438 * 17 15 14 19 19 H 1.08992 * 109.64245 * 55.42139 * 18 17 15 20 20 C 1.53024 * 109.64081 * 294.99512 * 18 17 15 21 21 C 1.50072 * 110.14469 * 190.88199 * 20 18 17 22 22 C 1.29448 * 124.07345 * 17.13450 * 21 20 18 23 23 C 1.50063 * 124.07802 * 359.50828 * 22 21 20 24 24 C 1.53036 * 110.13974 * 17.16791 * 23 22 21 25 25 C 1.47025 * 125.64801 * 354.77557 * 9 7 2 26 26 H 0.96995 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08999 * 110.37070 * 85.25466 * 10 9 7 28 28 H 1.08999 * 110.36574 * 322.92483 * 10 9 7 29 29 H 1.09000 * 111.00718 * 81.06431 * 11 10 9 30 30 H 1.09008 * 111.00168 * 204.87801 * 11 10 9 31 31 H 0.96994 * 120.00180 * 24.99552 * 14 12 11 32 32 H 1.08992 * 109.47021 * 299.99190 * 17 15 14 33 33 H 1.08997 * 109.47288 * 60.00252 * 17 15 14 34 34 H 1.08993 * 109.35940 * 311.08938 * 20 18 17 35 35 H 1.09001 * 109.35274 * 70.67942 * 20 18 17 36 36 H 1.07994 * 117.96530 * 197.11030 * 21 20 18 37 37 H 1.07997 * 117.95855 * 179.52855 * 22 21 20 38 38 H 1.08992 * 109.36123 * 137.36253 * 23 22 21 39 39 H 1.08999 * 109.35824 * 257.08615 * 23 22 21 40 40 H 1.08999 * 109.64164 * 190.86400 * 24 23 22 41 41 H 1.08995 * 109.66114 * 70.22376 * 24 23 22 42 42 H 1.08995 * 109.88411 * 59.55743 * 25 9 7 43 43 H 1.09003 * 109.88441 * 298.38748 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1144 9 7 1.3333 -2.3835 -0.1467 10 6 1.9494 -3.7169 -0.2727 11 6 0.8909 -4.5747 -1.0099 12 6 -0.4289 -4.0332 -0.3996 13 1 -1.2595 -4.1727 -1.0916 14 7 -0.7110 -4.6816 0.8835 15 6 -1.9788 -4.7609 1.3340 16 8 -2.8859 -4.2950 0.6775 17 6 -2.2689 -5.4274 2.6541 18 6 -3.7735 -5.3820 2.9284 19 1 -4.3116 -5.8330 2.0948 20 6 -4.2208 -3.9291 3.1038 21 6 -5.6250 -3.8807 3.6310 22 6 -6.2253 -4.8830 4.1885 23 6 -5.6048 -6.2364 4.3760 24 6 -4.0849 -6.1451 4.2222 25 6 -0.1283 -2.5323 -0.2029 26 1 -0.4850 0.8400 0.0004 27 1 2.1563 -4.1340 0.7128 28 1 2.8655 -3.6574 -0.8604 29 1 0.9253 -4.3988 -2.0851 30 1 1.0204 -5.6334 -0.7850 31 1 0.0146 -5.0538 1.4087 32 1 -1.9370 -6.4649 2.6180 33 1 -1.7390 -4.9037 3.4498 34 1 -3.5540 -3.4280 3.8054 35 1 -4.1785 -3.4194 2.1413 36 1 -6.1684 -2.9519 3.5400 37 1 -7.2358 -4.7360 4.5403 38 1 -5.8453 -6.6094 5.3715 39 1 -6.0013 -6.9225 3.6276 40 1 -3.6613 -7.1479 4.1670 41 1 -3.6616 -5.6116 5.0732 42 1 -0.5271 -1.9613 -1.0413 43 1 -0.5725 -2.1845 0.7298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015527131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:41 Heat of formation + Delta-G solvation = -13.465496 kcal Electronic energy + Delta-G solvation = -22034.741774 eV Core-core repulsion = 18886.946708 eV Total energy + Delta-G solvation = -3147.795066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.82172 -38.32374 -37.01515 -33.65058 -32.73234 -31.84391 -30.71235 -29.02348 -27.76107 -26.66621 -24.40792 -23.20593 -21.66554 -20.21803 -20.06493 -19.72025 -17.93558 -16.93524 -16.53937 -16.05307 -15.65193 -15.00024 -14.49067 -14.35736 -13.95399 -13.83080 -13.63555 -13.20998 -12.72655 -12.62937 -12.35958 -12.29260 -12.08974 -11.87518 -11.56041 -11.50084 -11.04165 -10.81668 -10.68471 -10.56300 -10.49896 -10.42879 -10.26328 -10.10201 -9.98396 -9.71053 -9.28236 -8.88437 -8.60452 -8.40035 -6.82205 -5.69662 -3.03465 2.36062 3.08133 3.41145 3.46022 3.48597 3.63307 4.51386 4.66095 4.71797 4.84569 5.10897 5.17916 5.27155 5.36914 5.38456 5.46531 5.51265 5.52471 5.63034 5.68906 5.77650 5.79792 5.81814 5.82928 5.85437 5.99036 6.13830 6.21111 6.37576 6.42208 6.48380 6.51786 6.60308 6.70584 6.71709 6.96734 7.05885 7.58527 7.65656 7.84092 8.00889 8.27174 8.71096 9.22820 9.83768 10.49544 11.41571 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.004104 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.652232 B = 6820.812368 C = 7706.628834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.132 3.868 11 C -0.140 4.140 12 C 0.113 3.887 13 H 0.088 0.912 14 N -0.714 5.714 15 C 0.511 3.489 16 O -0.540 6.540 17 C -0.137 4.137 18 C -0.068 4.068 19 H 0.079 0.921 20 C -0.097 4.097 21 C -0.137 4.137 22 C -0.175 4.175 23 C -0.086 4.086 24 C -0.116 4.116 25 C 0.173 3.827 26 H 0.253 0.747 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.395 0.605 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -14.621 7.164 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.006 3.994 11 C -0.179 4.179 12 C 0.008 3.992 13 H 0.106 0.894 14 N -0.364 5.364 15 C 0.297 3.703 16 O -0.417 6.417 17 C -0.177 4.177 18 C -0.087 4.087 19 H 0.097 0.903 20 C -0.133 4.133 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.123 4.123 24 C -0.154 4.154 25 C 0.048 3.952 26 H 0.063 0.937 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.304 -14.037 6.695 17.182 hybrid contribution 0.794 0.878 0.320 1.226 sum -6.511 -13.160 7.015 16.272 Atomic orbital electron populations 1.69984 1.04869 1.25102 1.56401 1.24837 0.95663 0.97673 1.02089 0.86140 0.78633 0.83724 0.77509 1.21602 1.21792 1.20676 1.19040 0.91065 0.82573 1.43423 0.90450 1.44515 1.01572 1.00984 1.86237 1.21562 0.94891 0.86915 0.96037 1.23044 0.95777 0.98450 1.00641 1.22396 0.96913 0.95786 0.84115 0.89389 1.46018 1.08028 1.59444 1.22898 1.20552 0.82731 0.79580 0.87462 1.90658 1.44668 1.47812 1.58594 1.21765 0.98288 1.01752 0.95932 1.20922 0.93598 0.96534 0.97621 0.90269 1.20685 0.93334 0.96609 1.02705 1.22167 0.97106 0.98417 0.97864 1.21952 0.99769 0.95434 1.02192 1.20387 0.95189 0.95376 1.01378 1.21690 0.95749 1.00118 0.97843 1.21539 0.84392 0.87855 1.01454 0.93686 0.96790 0.94106 0.90363 0.91709 0.77203 0.89281 0.89027 0.91251 0.88532 0.88230 0.88493 0.91478 0.91223 0.91771 0.91704 0.92808 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.54 10.36 55.49 0.57 -26.97 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.51 10.27 -15.06 -0.15 -6.67 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.61 -15.36 3.39 -170.07 -0.58 -15.94 16 10 C 0.13 2.61 7.20 -2.53 -0.02 2.59 16 11 C -0.14 -2.32 6.67 -24.58 -0.16 -2.49 16 12 C 0.11 2.14 3.32 -66.09 -0.22 1.93 16 13 H 0.09 1.73 7.55 -51.93 -0.39 1.34 16 14 N -0.71 -11.51 5.10 -52.02 -0.27 -11.78 16 15 C 0.51 8.31 7.58 -10.98 -0.08 8.22 16 16 O -0.54 -10.81 13.68 5.56 0.08 -10.74 16 17 C -0.14 -1.62 5.18 -27.88 -0.14 -1.76 16 18 C -0.07 -0.82 1.88 -90.40 -0.17 -0.99 16 19 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 20 C -0.10 -1.35 5.04 -28.17 -0.14 -1.49 16 21 C -0.14 -1.72 9.80 -35.90 -0.35 -2.08 16 22 C -0.18 -1.92 9.80 -35.90 -0.35 -2.27 16 23 C -0.09 -0.82 6.12 -28.17 -0.17 -0.99 16 24 C -0.12 -1.12 5.31 -26.51 -0.14 -1.27 16 25 C 0.17 4.29 5.13 -3.06 -0.02 4.27 16 26 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.39 5.39 8.64 -40.82 -0.35 5.04 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.10 1.65 6.22 -51.93 -0.32 1.33 16 36 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.05 1.51 7.30 -51.93 -0.38 1.13 16 43 H 0.05 1.31 7.52 -51.93 -0.39 0.92 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -32.34 339.07 -9.62 -41.96 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.29 Total: 4.34 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -2.22 Total: -3.26 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.27 Total: -54.69 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.34 -9.62 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015527131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.496 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds