Wall clock time and date at job start Tue Mar 31 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48496 * 109.47551 * 274.98676 * 3 2 1 5 5 H 1.48498 * 109.47148 * 34.99241 * 3 2 1 6 6 H 1.48502 * 109.47053 * 154.98549 * 3 2 1 7 7 C 1.38814 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00402 * 187.05644 * 7 2 1 9 9 N 1.36941 * 119.99801 * 7.05127 * 7 2 1 10 10 C 1.47424 * 125.64659 * 174.81835 * 9 7 2 11 11 C 1.54909 * 104.82940 * 204.09473 * 10 9 7 12 12 C 1.55160 * 101.58329 * 322.98505 * 11 10 9 13 13 H 1.09004 * 110.71826 * 153.86564 * 12 11 10 14 14 N 1.46501 * 110.72076 * 276.96684 * 12 11 10 15 15 C 1.34783 * 119.99650 * 204.99953 * 14 12 11 16 16 O 1.21278 * 119.99678 * 359.97438 * 15 14 12 17 17 C 1.50699 * 119.99535 * 180.02562 * 15 14 12 18 18 C 1.53007 * 109.46421 * 179.97438 * 17 15 14 19 19 H 1.08992 * 109.64245 * 55.42139 * 18 17 15 20 20 C 1.53024 * 109.64081 * 294.99512 * 18 17 15 21 21 C 1.50072 * 110.14469 * 190.88199 * 20 18 17 22 22 C 1.29448 * 124.07345 * 17.13450 * 21 20 18 23 23 C 1.50063 * 124.07802 * 359.50828 * 22 21 20 24 24 C 1.53036 * 110.13974 * 17.16791 * 23 22 21 25 25 C 1.47025 * 125.64801 * 354.77557 * 9 7 2 26 26 H 0.96995 * 120.00030 * 359.97438 * 1 2 3 27 27 H 1.08999 * 110.37070 * 85.25466 * 10 9 7 28 28 H 1.08999 * 110.36574 * 322.92483 * 10 9 7 29 29 H 1.09000 * 111.00718 * 81.06431 * 11 10 9 30 30 H 1.09008 * 111.00168 * 204.87801 * 11 10 9 31 31 H 0.96994 * 120.00180 * 24.99552 * 14 12 11 32 32 H 1.08992 * 109.47021 * 299.99190 * 17 15 14 33 33 H 1.08997 * 109.47288 * 60.00252 * 17 15 14 34 34 H 1.08993 * 109.35940 * 311.08938 * 20 18 17 35 35 H 1.09001 * 109.35274 * 70.67942 * 20 18 17 36 36 H 1.07994 * 117.96530 * 197.11030 * 21 20 18 37 37 H 1.07997 * 117.95855 * 179.52855 * 22 21 20 38 38 H 1.08992 * 109.36123 * 137.36253 * 23 22 21 39 39 H 1.08999 * 109.35824 * 257.08615 * 23 22 21 40 40 H 1.08999 * 109.64164 * 190.86400 * 24 23 22 41 41 H 1.08995 * 109.66114 * 70.22376 * 24 23 22 42 42 H 1.08995 * 109.88411 * 59.55743 * 25 9 7 43 43 H 1.09003 * 109.88441 * 298.38748 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0841 -1.2058 0.1144 9 7 1.3333 -2.3835 -0.1467 10 6 1.9494 -3.7169 -0.2727 11 6 0.8909 -4.5747 -1.0099 12 6 -0.4289 -4.0332 -0.3996 13 1 -1.2595 -4.1727 -1.0916 14 7 -0.7110 -4.6816 0.8835 15 6 -1.9788 -4.7609 1.3340 16 8 -2.8859 -4.2950 0.6775 17 6 -2.2689 -5.4274 2.6541 18 6 -3.7735 -5.3820 2.9284 19 1 -4.3116 -5.8330 2.0948 20 6 -4.2208 -3.9291 3.1038 21 6 -5.6250 -3.8807 3.6310 22 6 -6.2253 -4.8830 4.1885 23 6 -5.6048 -6.2364 4.3760 24 6 -4.0849 -6.1451 4.2222 25 6 -0.1283 -2.5323 -0.2029 26 1 -0.4850 0.8400 0.0004 27 1 2.1563 -4.1340 0.7128 28 1 2.8655 -3.6574 -0.8604 29 1 0.9253 -4.3988 -2.0851 30 1 1.0204 -5.6334 -0.7850 31 1 0.0146 -5.0538 1.4087 32 1 -1.9370 -6.4649 2.6180 33 1 -1.7390 -4.9037 3.4498 34 1 -3.5540 -3.4280 3.8054 35 1 -4.1785 -3.4194 2.1413 36 1 -6.1684 -2.9519 3.5400 37 1 -7.2358 -4.7360 4.5403 38 1 -5.8453 -6.6094 5.3715 39 1 -6.0013 -6.9225 3.6276 40 1 -3.6613 -7.1479 4.1670 41 1 -3.6616 -5.6116 5.0732 42 1 -0.5271 -1.9613 -1.0413 43 1 -0.5725 -2.1845 0.7298 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015527131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:40 Heat of formation + Delta-G solvation = -34.115309 kcal Electronic energy + Delta-G solvation = -22035.637217 eV Core-core repulsion = 18886.946708 eV Total energy + Delta-G solvation = -3148.690509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.11121 -39.52992 -38.50494 -35.37568 -33.92119 -33.49142 -31.58053 -30.79882 -29.33407 -27.98843 -26.34461 -24.12267 -22.79202 -22.01099 -21.40806 -21.13843 -18.93600 -18.80814 -17.90592 -17.39022 -16.81112 -16.59192 -16.05056 -15.71370 -15.52407 -15.06134 -14.88334 -14.41169 -14.18875 -13.90304 -13.72784 -13.53877 -13.34571 -13.15792 -13.06703 -12.86792 -12.75925 -12.40852 -12.17317 -12.11323 -11.93227 -11.89090 -11.69895 -11.60231 -11.47051 -10.99027 -10.77082 -10.55698 -9.94134 -9.81459 -8.90699 -7.86282 -5.22056 1.42836 1.43488 1.45985 1.54847 1.78703 2.35292 2.48933 3.32562 3.63888 3.74506 3.80949 3.86717 3.90820 4.12060 4.15879 4.30633 4.32397 4.45382 4.50674 4.60785 4.66745 4.76461 4.78473 4.79085 4.85666 4.97004 5.01653 5.06333 5.08703 5.12934 5.21206 5.28346 5.41100 5.41753 5.47689 5.54553 5.71408 5.79896 5.80774 6.10650 6.17304 6.72144 7.07228 7.44062 7.77356 8.41440 9.23702 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.004104 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.652232 B = 6820.812368 C = 7706.628834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.262 1.262 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.627 5.627 10 C 0.125 3.875 11 C -0.119 4.119 12 C 0.126 3.874 13 H 0.078 0.922 14 N -0.705 5.705 15 C 0.502 3.498 16 O -0.585 6.585 17 C -0.127 4.127 18 C -0.065 4.065 19 H 0.063 0.937 20 C -0.094 4.094 21 C -0.171 4.171 22 C -0.157 4.157 23 C -0.091 4.091 24 C -0.110 4.110 25 C 0.188 3.812 26 H 0.243 0.757 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.411 0.589 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.004 0.996 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -17.760 8.607 20.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.186 1.186 7 C -0.369 4.369 8 H 0.106 0.894 9 N -0.354 5.354 10 C 0.000 4.000 11 C -0.157 4.157 12 C 0.020 3.980 13 H 0.096 0.904 14 N -0.357 5.357 15 C 0.291 3.709 16 O -0.465 6.465 17 C -0.166 4.166 18 C -0.084 4.084 19 H 0.082 0.918 20 C -0.132 4.132 21 C -0.189 4.189 22 C -0.175 4.175 23 C -0.128 4.128 24 C -0.147 4.147 25 C 0.062 3.938 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.247 0.753 32 H 0.148 0.852 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.022 0.978 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -5.891 -17.233 8.158 19.955 hybrid contribution 0.347 1.836 -0.116 1.872 sum -5.544 -15.397 8.042 18.234 Atomic orbital electron populations 1.70254 1.06611 1.25078 1.58308 1.25721 0.96428 1.01316 1.02777 0.85071 0.77968 0.79178 0.77227 1.21502 1.22605 1.18643 1.19514 0.91754 0.83842 1.41836 0.89401 1.44819 1.01957 1.02633 1.86000 1.21849 0.95815 0.84660 0.97629 1.22978 0.92164 1.00393 1.00187 1.21961 0.98129 0.92285 0.85667 0.90421 1.45876 1.08808 1.58865 1.22120 1.21492 0.82034 0.78812 0.88599 1.90656 1.46026 1.49585 1.60217 1.21811 0.98237 1.03598 0.92959 1.20900 0.93620 0.95158 0.98764 0.91829 1.20562 0.94528 0.97898 1.00164 1.22116 0.96852 0.99360 1.00573 1.22289 1.00132 0.95608 0.99488 1.20519 0.94979 0.94258 1.03014 1.21677 0.96099 1.01012 0.95919 1.21147 0.84247 0.91407 0.97038 0.94740 0.94626 0.93172 0.90122 0.86909 0.75258 0.85181 0.87778 0.92047 0.92973 0.88888 0.86944 0.89083 0.90319 0.89048 0.91398 0.97813 0.98263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.58 10.36 21.65 0.22 -60.35 16 2 C -0.07 -4.09 5.48 84.86 0.46 -3.62 16 3 Si 0.98 46.90 29.56 68.60 2.03 48.92 16 4 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.58 10.27 84.03 0.86 -12.72 16 8 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 9 N -0.63 -32.13 3.39 -691.98 -2.35 -34.48 16 10 C 0.12 4.66 7.20 86.86 0.63 5.28 16 11 C -0.12 -3.62 6.67 31.99 0.21 -3.40 16 12 C 0.13 4.80 3.32 46.18 0.15 4.95 16 13 H 0.08 3.15 7.55 -2.38 -0.02 3.13 16 14 N -0.71 -22.00 5.10 -436.89 -2.23 -24.23 16 15 C 0.50 16.32 7.58 87.66 0.66 16.98 16 16 O -0.58 -24.68 13.68 -3.02 -0.04 -24.72 16 17 C -0.13 -2.73 5.18 29.85 0.15 -2.58 16 18 C -0.07 -1.53 1.88 -10.65 -0.02 -1.55 16 19 H 0.06 1.69 7.96 -2.39 -0.02 1.67 16 20 C -0.09 -2.79 5.04 29.66 0.15 -2.64 16 21 C -0.17 -4.43 9.80 27.03 0.27 -4.17 16 22 C -0.16 -3.23 9.80 27.03 0.26 -2.96 16 23 C -0.09 -1.43 6.12 29.66 0.18 -1.25 16 24 C -0.11 -1.76 5.31 30.74 0.16 -1.60 16 25 C 0.19 9.79 5.13 86.73 0.44 10.23 16 26 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.41 10.04 8.64 -92.71 -0.80 9.24 16 32 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 2.05 8.11 -2.39 -0.02 2.03 16 34 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.05 1.98 6.22 -2.39 -0.01 1.96 16 36 H 0.09 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 42 H 0.00 0.23 7.30 -2.39 -0.02 0.21 16 43 H 0.00 -0.05 7.52 -2.39 -0.02 -0.07 16 Total: -1.00 -76.85 339.07 2.40 -74.45 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.18 Total: 19.46 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 4.59 Total: 0.96 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -4.35 Total: -119.07 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.72 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.85 2.40 -74.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015527131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.332 kcal (2) G-P(sol) polarization free energy of solvation -76.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds