Wall clock time and date at job start Tue Mar 31 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47323 * 179.72453 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.72035 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.72063 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65118 * 359.68984 * 9 7 2 11 11 C 1.55127 * 104.72341 * 155.81761 * 10 9 7 12 12 C 1.55161 * 101.48722 * 37.29220 * 11 10 9 13 13 H 1.09009 * 110.71402 * 82.69715 * 12 11 10 14 14 N 1.46499 * 110.72159 * 205.96524 * 12 11 10 15 15 C 1.34767 * 120.00111 * 199.97550 * 14 12 11 16 16 O 1.21281 * 120.00319 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00190 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.47346 * 180.02562 * 17 15 14 19 19 H 1.09005 * 109.63938 * 305.41962 * 18 17 15 20 20 C 1.53019 * 109.64334 * 66.05655 * 18 17 15 21 21 C 1.50061 * 110.14799 * 169.12187 * 20 18 17 22 22 C 1.29440 * 124.07887 * 342.86463 * 21 20 18 23 23 C 1.50073 * 124.07326 * 0.47390 * 22 21 20 24 24 C 1.53024 * 110.14501 * 342.86809 * 23 22 21 25 25 C 1.47026 * 125.64536 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 27 27 H 1.09002 * 110.36360 * 274.74353 * 10 9 7 28 28 H 1.08998 * 110.36251 * 37.07103 * 10 9 7 29 29 H 1.09001 * 111.19552 * 279.19138 * 11 10 9 30 30 H 1.08994 * 110.94283 * 155.28907 * 11 10 9 31 31 H 0.97004 * 119.99826 * 19.98763 * 14 12 11 32 32 H 1.09004 * 109.47427 * 300.00360 * 17 15 14 33 33 H 1.09005 * 109.47076 * 60.00236 * 17 15 14 34 34 H 1.09006 * 109.35876 * 289.33101 * 20 18 17 35 35 H 1.09001 * 109.35946 * 48.90984 * 20 18 17 36 36 H 1.08009 * 117.96359 * 162.85046 * 21 20 18 37 37 H 1.08000 * 117.96538 * 180.49149 * 22 21 20 38 38 H 1.08995 * 109.35891 * 222.65969 * 23 22 21 39 39 H 1.09000 * 109.35497 * 103.07269 * 23 22 21 40 40 H 1.08999 * 109.64126 * 289.74832 * 24 23 22 41 41 H 1.09001 * 109.64131 * 169.12621 * 24 23 22 42 42 H 1.08996 * 109.88166 * 300.44024 * 25 9 7 43 43 H 1.09001 * 109.88242 * 61.60565 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0067 5 1 1.8965 2.3935 -1.2160 6 1 1.8863 2.3995 1.2091 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 -0.1416 -2.5331 0.0179 11 6 -0.4018 -3.9351 -0.5928 12 6 0.7784 -4.7525 -0.0042 13 1 0.5461 -5.0933 1.0048 14 7 1.1082 -5.8855 -0.8724 15 6 1.8004 -6.9321 -0.3807 16 8 2.1500 -6.9362 0.7806 17 6 2.1402 -8.0973 -1.2739 18 6 2.9224 -9.1415 -0.4747 19 1 3.7923 -8.6737 -0.0136 20 6 2.0219 -9.7419 0.6070 21 6 2.6809 -10.9423 1.2206 22 6 3.6706 -11.5804 0.6831 23 6 4.3038 -11.2028 -0.6241 24 6 3.3780 -10.2702 -1.4082 25 6 1.9318 -3.7274 0.0173 26 1 -0.4850 0.8400 -0.0041 27 1 -0.5230 -2.4843 1.0378 28 1 -0.6019 -1.7603 -0.5977 29 1 -0.3525 -3.9062 -1.6813 30 1 -1.3590 -4.3344 -0.2578 31 1 0.8285 -5.8823 -1.8012 32 1 1.2213 -8.5443 -1.6534 33 1 2.7472 -7.7495 -2.1098 34 1 1.8388 -8.9955 1.3801 35 1 1.0720 -10.0389 0.1625 36 1 2.3064 -11.2957 2.1701 37 1 4.0649 -12.4381 1.2078 38 1 4.4892 -12.1035 -1.2092 39 1 5.2502 -10.6965 -0.4341 40 1 2.5098 -10.8271 -1.7606 41 1 3.9161 -9.8488 -2.2573 42 1 2.5577 -3.8549 -0.8659 43 1 2.5287 -3.8601 0.9196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015527133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:47 Heat of formation + Delta-G solvation = -12.857499 kcal Electronic energy + Delta-G solvation = -21616.506322 eV Core-core repulsion = 18468.737620 eV Total energy + Delta-G solvation = -3147.768701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.98992 -38.42633 -37.06973 -33.97451 -32.90208 -31.80453 -30.86927 -29.23558 -27.89748 -26.48339 -24.41522 -23.33702 -21.70485 -20.55953 -20.13877 -19.63957 -18.09831 -17.11486 -16.60812 -16.13861 -15.80637 -15.16719 -14.68816 -14.38092 -14.22865 -14.08223 -13.45741 -13.25428 -12.81058 -12.75453 -12.45484 -12.41252 -12.14037 -11.94326 -11.71202 -11.59442 -11.07606 -10.92995 -10.81367 -10.78547 -10.66618 -10.48062 -10.26086 -10.08898 -9.82230 -9.62010 -9.42963 -9.06261 -8.69001 -8.65730 -6.83664 -5.65909 -3.07431 2.20094 2.86082 3.39372 3.41740 3.46272 3.48814 4.49361 4.50496 4.56691 4.68839 4.95089 5.03666 5.15909 5.22608 5.33922 5.36914 5.45189 5.47168 5.53423 5.55641 5.59145 5.69347 5.71647 5.80926 5.82783 5.84526 6.03740 6.16549 6.23925 6.32010 6.40891 6.48809 6.55749 6.58563 6.77127 6.87283 7.04717 7.47191 7.62569 7.75643 7.85065 8.34193 8.48981 9.21805 9.82402 10.46617 11.38270 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039234 B = 0.003066 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.489649 B = 9129.611151 C = 9380.378882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.149 4.149 12 C 0.131 3.869 13 H 0.089 0.911 14 N -0.719 5.719 15 C 0.509 3.491 16 O -0.539 6.539 17 C -0.137 4.137 18 C -0.071 4.071 19 H 0.081 0.919 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.169 4.169 23 C -0.089 4.089 24 C -0.116 4.116 25 C 0.129 3.871 26 H 0.252 0.748 27 H 0.015 0.985 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.397 0.603 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.024 0.976 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -21.392 -4.737 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.028 3.972 11 C -0.189 4.189 12 C 0.026 3.974 13 H 0.107 0.893 14 N -0.369 5.369 15 C 0.295 3.705 16 O -0.416 6.416 17 C -0.178 4.178 18 C -0.090 4.090 19 H 0.100 0.900 20 C -0.130 4.130 21 C -0.162 4.162 22 C -0.187 4.187 23 C -0.126 4.126 24 C -0.154 4.154 25 C 0.002 3.998 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.231 0.769 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.605 -21.166 -3.877 21.676 hybrid contribution 0.330 0.785 -0.310 0.906 sum 2.934 -20.382 -4.187 21.013 Atomic orbital electron populations 1.69770 1.04888 1.24679 1.57959 1.24787 0.95755 0.97721 1.02526 0.85979 0.78681 0.83510 0.77238 1.20519 1.21746 1.21721 1.19144 0.90588 0.82384 1.42662 0.90431 1.44475 1.01913 0.99728 1.86951 1.21993 0.84896 0.91909 0.98451 1.23352 0.95973 0.99209 1.00323 1.22070 0.96086 0.84900 0.94309 0.89265 1.46132 1.56889 1.19419 1.14504 1.20661 0.77668 0.83536 0.88659 1.90674 1.52747 1.80166 1.18015 1.21777 1.02204 0.94793 0.98982 1.20949 0.98795 0.93946 0.95262 0.90019 1.20639 0.97579 0.95896 0.98865 1.22117 0.97647 0.96972 0.99438 1.21990 0.98610 1.00323 0.97770 1.20411 0.98672 0.99216 0.94273 1.21683 0.99452 0.96495 0.97734 1.21597 0.93996 0.85868 0.98310 0.93756 0.96694 0.87149 0.91682 0.91831 0.76870 0.89109 0.88906 0.88953 0.91484 0.88263 0.88388 0.91346 0.91008 0.91759 0.91590 0.95767 0.95606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.08 55.49 0.56 -26.37 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.92 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.81 3.39 -169.93 -0.58 -16.38 16 10 C 0.15 3.69 5.91 -2.41 -0.01 3.67 16 11 C -0.15 -2.72 6.71 -24.46 -0.16 -2.88 16 12 C 0.13 2.39 3.23 -66.10 -0.21 2.17 16 13 H 0.09 1.74 7.70 -51.92 -0.40 1.34 16 14 N -0.72 -10.21 5.13 -52.03 -0.27 -10.47 16 15 C 0.51 7.22 7.59 -10.99 -0.08 7.14 16 16 O -0.54 -9.75 13.83 5.56 0.08 -9.67 16 17 C -0.14 -1.35 5.17 -27.88 -0.14 -1.49 16 18 C -0.07 -0.74 1.87 -90.41 -0.17 -0.91 16 19 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 20 C -0.09 -1.03 5.05 -28.18 -0.14 -1.17 16 21 C -0.14 -1.48 9.80 -35.90 -0.35 -1.83 16 22 C -0.17 -1.58 9.80 -35.90 -0.35 -1.93 16 23 C -0.09 -0.73 6.12 -28.17 -0.17 -0.90 16 24 C -0.12 -0.95 5.31 -26.52 -0.14 -1.09 16 25 C 0.13 2.88 6.99 -3.06 -0.02 2.85 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.11 2.97 5.86 -51.93 -0.30 2.66 16 29 H 0.06 1.11 8.00 -51.93 -0.42 0.69 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.49 8.52 -40.82 -0.35 4.14 16 32 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.26 6.31 -51.93 -0.33 0.94 16 35 H 0.07 0.67 8.06 -51.93 -0.42 0.26 16 36 H 0.10 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.10 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.50 8.12 -51.93 -0.42 0.07 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.48 15.07 5.10 5.10 Total: -1.00 -31.92 338.48 -9.58 -41.51 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.23 Total: 2.29 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -2.22 Total: -3.22 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.28 Total: -53.23 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.67 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.92 -9.58 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015527133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.648 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds