Wall clock time and date at job start Tue Mar 31 2020 00:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48497 * 109.47323 * 179.72453 * 3 2 1 5 5 H 1.48506 * 109.46790 * 299.72035 * 3 2 1 6 6 H 1.48501 * 109.47364 * 59.72063 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.65118 * 359.68984 * 9 7 2 11 11 C 1.55127 * 104.72341 * 155.81761 * 10 9 7 12 12 C 1.55161 * 101.48722 * 37.29220 * 11 10 9 13 13 H 1.09009 * 110.71402 * 82.69715 * 12 11 10 14 14 N 1.46499 * 110.72159 * 205.96524 * 12 11 10 15 15 C 1.34767 * 120.00111 * 199.97550 * 14 12 11 16 16 O 1.21281 * 120.00319 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00190 * 180.02562 * 15 14 12 18 18 C 1.53001 * 109.47346 * 180.02562 * 17 15 14 19 19 H 1.09005 * 109.63938 * 305.41962 * 18 17 15 20 20 C 1.53019 * 109.64334 * 66.05655 * 18 17 15 21 21 C 1.50061 * 110.14799 * 169.12187 * 20 18 17 22 22 C 1.29440 * 124.07887 * 342.86463 * 21 20 18 23 23 C 1.50073 * 124.07326 * 0.47390 * 22 21 20 24 24 C 1.53024 * 110.14501 * 342.86809 * 23 22 21 25 25 C 1.47026 * 125.64536 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 27 27 H 1.09002 * 110.36360 * 274.74353 * 10 9 7 28 28 H 1.08998 * 110.36251 * 37.07103 * 10 9 7 29 29 H 1.09001 * 111.19552 * 279.19138 * 11 10 9 30 30 H 1.08994 * 110.94283 * 155.28907 * 11 10 9 31 31 H 0.97004 * 119.99826 * 19.98763 * 14 12 11 32 32 H 1.09004 * 109.47427 * 300.00360 * 17 15 14 33 33 H 1.09005 * 109.47076 * 60.00236 * 17 15 14 34 34 H 1.09006 * 109.35876 * 289.33101 * 20 18 17 35 35 H 1.09001 * 109.35946 * 48.90984 * 20 18 17 36 36 H 1.08009 * 117.96359 * 162.85046 * 21 20 18 37 37 H 1.08000 * 117.96538 * 180.49149 * 22 21 20 38 38 H 1.08995 * 109.35891 * 222.65969 * 23 22 21 39 39 H 1.09000 * 109.35497 * 103.07269 * 23 22 21 40 40 H 1.08999 * 109.64126 * 289.74832 * 24 23 22 41 41 H 1.09001 * 109.64131 * 169.12621 * 24 23 22 42 42 H 1.08996 * 109.88166 * 300.44024 * 25 9 7 43 43 H 1.09001 * 109.88242 * 61.60565 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0067 5 1 1.8965 2.3935 -1.2160 6 1 1.8863 2.3995 1.2091 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 -0.1416 -2.5331 0.0179 11 6 -0.4018 -3.9351 -0.5928 12 6 0.7784 -4.7525 -0.0042 13 1 0.5461 -5.0933 1.0048 14 7 1.1082 -5.8855 -0.8724 15 6 1.8004 -6.9321 -0.3807 16 8 2.1500 -6.9362 0.7806 17 6 2.1402 -8.0973 -1.2739 18 6 2.9224 -9.1415 -0.4747 19 1 3.7923 -8.6737 -0.0136 20 6 2.0219 -9.7419 0.6070 21 6 2.6809 -10.9423 1.2206 22 6 3.6706 -11.5804 0.6831 23 6 4.3038 -11.2028 -0.6241 24 6 3.3780 -10.2702 -1.4082 25 6 1.9318 -3.7274 0.0173 26 1 -0.4850 0.8400 -0.0041 27 1 -0.5230 -2.4843 1.0378 28 1 -0.6019 -1.7603 -0.5977 29 1 -0.3525 -3.9062 -1.6813 30 1 -1.3590 -4.3344 -0.2578 31 1 0.8285 -5.8823 -1.8012 32 1 1.2213 -8.5443 -1.6534 33 1 2.7472 -7.7495 -2.1098 34 1 1.8388 -8.9955 1.3801 35 1 1.0720 -10.0389 0.1625 36 1 2.3064 -11.2957 2.1701 37 1 4.0649 -12.4381 1.2078 38 1 4.4892 -12.1035 -1.2092 39 1 5.2502 -10.6965 -0.4341 40 1 2.5098 -10.8271 -1.7606 41 1 3.9161 -9.8488 -2.2573 42 1 2.5577 -3.8549 -0.8659 43 1 2.5287 -3.8601 0.9196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015527133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:47 Heat of formation + Delta-G solvation = -32.474316 kcal Electronic energy + Delta-G solvation = -21617.356971 eV Core-core repulsion = 18468.737620 eV Total energy + Delta-G solvation = -3148.619350 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12086 -39.50131 -38.55037 -35.58321 -33.93543 -33.45647 -31.57063 -31.05575 -29.26481 -27.85547 -26.30007 -24.09269 -22.74480 -22.23348 -21.52693 -20.98594 -19.03344 -18.84510 -17.82998 -17.37525 -16.87120 -16.64654 -16.27467 -15.80894 -15.50864 -15.05408 -14.80966 -14.30281 -14.24729 -13.81503 -13.75943 -13.56232 -13.42896 -13.16699 -13.02471 -12.95018 -12.75886 -12.51370 -12.32403 -12.19520 -11.99999 -11.85945 -11.58928 -11.46762 -11.42168 -10.98181 -10.79402 -10.62673 -10.04778 -9.79808 -8.93787 -7.80758 -5.26224 1.45140 1.45666 1.47007 1.57454 1.74290 2.23440 2.49253 3.29223 3.63804 3.74961 3.76893 3.83917 3.93535 4.05170 4.15909 4.25268 4.31792 4.46721 4.52381 4.58669 4.62029 4.74021 4.77697 4.81656 4.86405 4.90573 4.96532 5.01216 5.05810 5.09342 5.16111 5.27965 5.41820 5.42798 5.54583 5.57196 5.63111 5.76108 5.82560 6.12316 6.27933 6.68113 7.07850 7.38551 7.73266 8.36462 9.20997 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039234 B = 0.003066 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.489649 B = 9129.611151 C = 9380.378882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.624 5.624 10 C 0.151 3.849 11 C -0.126 4.126 12 C 0.149 3.851 13 H 0.074 0.926 14 N -0.707 5.707 15 C 0.504 3.496 16 O -0.583 6.583 17 C -0.126 4.126 18 C -0.071 4.071 19 H 0.053 0.947 20 C -0.091 4.091 21 C -0.167 4.167 22 C -0.163 4.163 23 C -0.094 4.094 24 C -0.110 4.110 25 C 0.129 3.871 26 H 0.250 0.750 27 H -0.013 1.013 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.416 0.584 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.029 0.971 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.656 -23.078 -6.951 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.810 3.190 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.351 5.351 10 C 0.026 3.974 11 C -0.165 4.165 12 C 0.043 3.957 13 H 0.093 0.907 14 N -0.360 5.360 15 C 0.293 3.707 16 O -0.462 6.462 17 C -0.166 4.166 18 C -0.090 4.090 19 H 0.071 0.929 20 C -0.128 4.128 21 C -0.185 4.185 22 C -0.181 4.181 23 C -0.131 4.131 24 C -0.147 4.147 25 C 0.002 3.998 26 H 0.059 0.941 27 H 0.005 0.995 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.254 0.746 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.047 0.953 43 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 2.880 -22.889 -6.129 23.870 hybrid contribution 0.288 1.279 0.447 1.385 sum 3.169 -21.610 -5.682 22.568 Atomic orbital electron populations 1.70006 1.06087 1.25193 1.58296 1.25632 0.96738 1.00888 1.02342 0.84956 0.77909 0.79124 0.76980 1.19482 1.21160 1.21861 1.19455 0.90895 0.83832 1.43084 0.90714 1.44767 1.02964 1.00524 1.86843 1.21838 0.83801 0.94954 0.96814 1.23143 0.97171 0.95062 1.01091 1.21584 0.94266 0.85228 0.94654 0.90743 1.45937 1.56963 1.18117 1.14951 1.21544 0.76374 0.84181 0.88619 1.90677 1.54230 1.81013 1.20321 1.21819 1.03947 0.92510 0.98293 1.20923 0.97662 0.94814 0.95594 0.92869 1.20560 0.98515 0.95333 0.98368 1.22171 0.98858 0.97455 1.00025 1.22251 0.97578 1.00082 0.98220 1.20510 0.98481 1.00147 0.93923 1.21663 1.00023 0.95544 0.97474 1.21687 0.95315 0.85586 0.97173 0.94056 0.99496 0.89860 0.89666 0.88907 0.74633 0.85958 0.86364 0.92354 0.90378 0.88315 0.87294 0.89359 0.91167 0.90552 0.89912 0.95301 0.98047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.31 10.08 21.65 0.22 -56.09 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 3 Si 0.98 46.17 29.55 68.60 2.03 48.20 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.24 -14.15 10.27 84.04 0.86 -13.29 16 8 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.62 -33.42 3.39 -691.55 -2.35 -35.77 16 10 C 0.15 7.44 5.91 86.93 0.51 7.96 16 11 C -0.13 -4.39 6.71 32.06 0.22 -4.18 16 12 C 0.15 5.33 3.23 46.18 0.15 5.48 16 13 H 0.07 2.92 7.70 -2.38 -0.02 2.90 16 14 N -0.71 -18.60 5.13 -436.92 -2.24 -20.84 16 15 C 0.50 13.61 7.59 87.66 0.67 14.27 16 16 O -0.58 -21.40 13.83 -3.03 -0.04 -21.44 16 17 C -0.13 -2.08 5.17 29.85 0.15 -1.93 16 18 C -0.07 -1.36 1.87 -10.66 -0.02 -1.38 16 19 H 0.05 1.32 7.93 -2.38 -0.02 1.30 16 20 C -0.09 -1.97 5.05 29.65 0.15 -1.82 16 21 C -0.17 -3.36 9.80 27.04 0.27 -3.10 16 22 C -0.16 -2.80 9.80 27.04 0.27 -2.53 16 23 C -0.09 -1.31 6.12 29.66 0.18 -1.13 16 24 C -0.11 -1.45 5.31 30.73 0.16 -1.28 16 25 C 0.13 5.83 6.99 86.73 0.61 6.43 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 28 H 0.08 4.58 5.86 -2.39 -0.01 4.57 16 29 H 0.08 2.66 8.00 -2.39 -0.02 2.64 16 30 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.42 7.91 8.52 -92.70 -0.79 7.12 16 32 H 0.12 1.34 8.09 -2.38 -0.02 1.32 16 33 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.06 1.66 6.31 -2.38 -0.02 1.65 16 35 H 0.08 1.45 8.06 -2.39 -0.02 1.43 16 36 H 0.10 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.03 1.27 8.03 -2.39 -0.02 1.25 16 43 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -72.44 338.48 2.45 -70.00 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.19 Total: 15.59 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 4.64 Total: 0.35 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.37 Total: -112.69 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.04 Total: -21.44 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -72.44 2.45 -70.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015527133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.523 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds