Wall clock time and date at job start Tue Mar 31 2020 00:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47401 * 264.53761 * 3 2 1 5 5 H 1.48498 * 109.46765 * 24.53715 * 3 2 1 6 6 H 1.48501 * 109.46960 * 144.53587 * 3 2 1 7 7 C 1.38816 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00052 * 337.63065 * 7 2 1 9 9 N 1.36934 * 119.99774 * 157.63352 * 7 2 1 10 10 C 1.47431 * 125.65270 * 341.47506 * 9 7 2 11 11 C 1.54909 * 104.83325 * 204.16426 * 10 9 7 12 12 C 1.55159 * 101.58465 * 322.99079 * 11 10 9 13 13 H 1.09004 * 110.87230 * 277.06958 * 12 11 10 14 14 N 1.46495 * 110.72207 * 153.86202 * 12 11 10 15 15 C 1.34782 * 119.99965 * 159.74884 * 14 12 11 16 16 O 1.21274 * 119.99726 * 0.27685 * 15 14 12 17 17 C 1.50703 * 120.00021 * 180.27669 * 15 14 12 18 18 C 1.52994 * 109.46922 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.64655 * 305.42089 * 18 17 15 20 20 C 1.53026 * 109.64043 * 66.05911 * 18 17 15 21 21 C 1.50071 * 110.14990 * 169.11694 * 20 18 17 22 22 C 1.29447 * 124.07181 * 342.87142 * 21 20 18 23 23 C 1.50065 * 124.07794 * 0.46714 * 22 21 20 24 24 C 1.53027 * 110.14526 * 342.86937 * 23 22 21 25 25 C 1.47032 * 125.64818 * 161.51716 * 9 7 2 26 26 H 0.97000 * 120.00408 * 359.97438 * 1 2 3 27 27 H 1.08999 * 110.36191 * 323.00313 * 10 9 7 28 28 H 1.08997 * 110.36467 * 85.33098 * 10 9 7 29 29 H 1.09000 * 111.00509 * 204.91286 * 11 10 9 30 30 H 1.09005 * 111.00258 * 81.05852 * 11 10 9 31 31 H 0.97004 * 120.00302 * 340.02582 * 14 12 11 32 32 H 1.08993 * 109.46958 * 300.00469 * 17 15 14 33 33 H 1.09005 * 109.46862 * 60.00329 * 17 15 14 34 34 H 1.08997 * 109.35885 * 289.32776 * 20 18 17 35 35 H 1.09005 * 109.36031 * 48.91211 * 20 18 17 36 36 H 1.07997 * 117.96273 * 162.88755 * 21 20 18 37 37 H 1.08000 * 117.95721 * 180.49037 * 22 21 20 38 38 H 1.08995 * 109.36076 * 222.66447 * 23 22 21 39 39 H 1.08995 * 109.25091 * 103.00476 * 23 22 21 40 40 H 1.08999 * 109.64295 * 289.74907 * 24 23 22 41 41 H 1.09004 * 109.81512 * 169.22588 * 24 23 22 42 42 H 1.09003 * 109.87954 * 59.48722 * 25 9 7 43 43 H 1.08996 * 109.87980 * 298.32423 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3946 2.6832 0.5814 6 1 3.4852 1.4762 0.8123 7 6 2.0101 -1.2022 -0.0005 8 1 1.5311 -2.1024 0.3550 9 7 3.3022 -1.2466 -0.4518 10 6 3.9506 -0.2320 -1.3027 11 6 5.0953 -0.9895 -2.0207 12 6 5.5799 -1.9523 -0.9046 13 1 6.2743 -1.4490 -0.2319 14 7 6.1970 -3.1482 -1.4836 15 6 7.0316 -3.9025 -0.7412 16 8 7.2677 -3.5940 0.4076 17 6 7.6713 -5.1292 -1.3388 18 6 8.5661 -5.7982 -0.2936 19 1 9.2828 -5.0737 0.0930 20 6 7.7053 -6.3377 0.8509 21 6 8.5271 -7.2203 1.7441 22 6 9.6667 -7.7335 1.4070 23 6 10.3301 -7.5095 0.0797 24 6 9.3154 -6.9741 -0.9329 25 6 4.2725 -2.3144 -0.1688 26 1 -0.4851 0.8400 0.0004 27 1 3.2414 0.1619 -2.0305 28 1 4.3548 0.5742 -0.6906 29 1 5.8899 -0.3054 -2.3186 30 1 4.7179 -1.5451 -2.8792 31 1 6.0081 -3.3950 -2.4025 32 1 6.8952 -5.8269 -1.6535 33 1 8.2729 -4.8418 -2.2012 34 1 7.3112 -5.5033 1.4309 35 1 6.8758 -6.9126 0.4391 36 1 8.1438 -7.4412 2.7293 37 1 10.1712 -8.3623 2.1257 38 1 10.7397 -8.4521 -0.2832 39 1 11.1373 -6.7869 0.1988 40 1 8.6079 -7.7611 -1.1938 41 1 9.8328 -6.6344 -1.8302 42 1 3.8923 -3.2676 -0.5361 43 1 4.4553 -2.3743 0.9040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015527134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:50 Heat of formation + Delta-G solvation = -10.313213 kcal Electronic energy + Delta-G solvation = -21730.348657 eV Core-core repulsion = 18582.690284 eV Total energy + Delta-G solvation = -3147.658373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.09925 -38.55006 -37.37893 -34.11017 -32.94785 -32.02119 -30.88551 -29.66328 -28.30243 -26.91735 -24.22933 -23.35096 -21.74762 -21.17533 -20.24900 -19.87906 -18.11805 -17.20511 -16.71408 -16.19850 -15.96291 -15.30443 -15.03358 -14.73246 -14.24066 -13.87779 -13.54430 -13.45477 -13.05310 -12.81265 -12.70891 -12.49210 -12.40866 -12.19297 -11.89830 -11.76966 -11.45796 -11.22791 -11.00616 -10.85988 -10.74444 -10.69227 -10.29398 -10.12563 -10.03362 -9.59459 -9.43414 -9.06651 -8.88688 -8.63875 -7.04430 -5.93997 -3.24522 2.19896 2.75624 3.26916 3.34043 3.49301 3.52232 4.46890 4.51834 4.55339 4.62438 4.85733 4.97765 5.00775 5.02901 5.17228 5.21384 5.31980 5.33927 5.42138 5.44029 5.50133 5.53618 5.57767 5.64665 5.67315 5.80557 5.87228 5.96466 6.03295 6.14944 6.17579 6.28092 6.41707 6.53193 6.55044 6.58613 6.73723 6.84816 6.88603 7.64186 7.71461 8.31362 8.37298 8.84040 9.69148 10.17046 11.22186 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.003348 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.028552 B = 8359.956912 C = 8686.942691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.608 5.608 10 C 0.112 3.888 11 C -0.136 4.136 12 C 0.131 3.869 13 H 0.093 0.907 14 N -0.720 5.720 15 C 0.510 3.490 16 O -0.536 6.536 17 C -0.137 4.137 18 C -0.070 4.070 19 H 0.080 0.920 20 C -0.095 4.095 21 C -0.142 4.142 22 C -0.171 4.171 23 C -0.088 4.088 24 C -0.116 4.116 25 C 0.128 3.872 26 H 0.263 0.737 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.128 -13.192 -5.570 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.336 5.336 10 C -0.014 4.014 11 C -0.175 4.175 12 C 0.026 3.974 13 H 0.111 0.889 14 N -0.371 5.371 15 C 0.296 3.704 16 O -0.413 6.413 17 C -0.177 4.177 18 C -0.089 4.089 19 H 0.099 0.901 20 C -0.132 4.132 21 C -0.160 4.160 22 C -0.189 4.189 23 C -0.125 4.125 24 C -0.154 4.154 25 C 0.002 3.998 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 20.048 -12.885 -4.676 24.286 hybrid contribution 0.236 0.857 -0.273 0.930 sum 20.284 -12.028 -4.949 24.096 Atomic orbital electron populations 1.69835 1.05539 1.26594 1.53319 1.24998 0.95180 0.97387 1.00149 0.86983 0.79282 0.84701 0.77767 1.21182 1.22984 1.20172 1.18647 0.84142 0.95506 1.38492 0.89033 1.44756 1.09833 1.22173 1.56813 1.21947 0.93397 0.92607 0.93419 1.23023 0.98710 0.98270 0.97482 1.22042 0.94808 0.84880 0.95692 0.88875 1.46079 1.47286 1.27587 1.16152 1.20687 0.78730 0.84509 0.86449 1.90684 1.61859 1.71267 1.17480 1.21779 1.00380 0.95668 0.99909 1.20944 0.96927 0.96507 0.94493 0.90129 1.20659 0.97261 0.99028 0.96210 1.22133 0.96386 0.97887 0.99564 1.21981 0.97404 1.01561 0.97985 1.20397 0.97956 1.00908 0.93202 1.21683 0.98126 0.97794 0.97781 1.21677 0.87866 0.92698 0.97576 0.92693 0.91868 0.95455 0.91053 0.90648 0.76733 0.88863 0.88981 0.88862 0.91290 0.88178 0.88375 0.91332 0.91112 0.91691 0.91671 0.94730 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.29 13.97 55.49 0.78 -27.52 16 2 C 0.02 0.63 5.43 -17.43 -0.09 0.53 16 3 Si 0.88 22.76 24.27 -169.99 -4.13 18.64 16 4 H -0.28 -6.95 6.49 56.52 0.37 -6.59 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.28 -7.09 6.66 56.52 0.38 -6.71 16 7 C -0.24 -6.96 10.57 -15.06 -0.16 -7.12 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.61 -14.97 3.21 -170.06 -0.55 -15.51 16 10 C 0.11 2.40 4.69 -2.53 -0.01 2.39 16 11 C -0.14 -2.15 6.69 -24.58 -0.16 -2.31 16 12 C 0.13 2.16 3.24 -66.10 -0.21 1.94 16 13 H 0.09 1.65 7.69 -51.93 -0.40 1.25 16 14 N -0.72 -9.17 5.13 -52.03 -0.27 -9.44 16 15 C 0.51 6.69 7.59 -10.98 -0.08 6.60 16 16 O -0.54 -9.17 13.82 5.56 0.08 -9.09 16 17 C -0.14 -1.23 5.17 -27.88 -0.14 -1.37 16 18 C -0.07 -0.69 1.87 -90.41 -0.17 -0.85 16 19 H 0.08 0.93 7.93 -51.93 -0.41 0.51 16 20 C -0.09 -1.06 5.05 -28.17 -0.14 -1.21 16 21 C -0.14 -1.48 9.80 -35.90 -0.35 -1.83 16 22 C -0.17 -1.58 9.80 -35.90 -0.35 -1.93 16 23 C -0.09 -0.69 6.12 -28.18 -0.17 -0.86 16 24 C -0.12 -0.90 5.31 -26.51 -0.14 -1.04 16 25 C 0.13 2.67 6.99 -3.06 -0.02 2.65 16 26 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 27 H 0.06 1.43 6.63 -51.93 -0.34 1.08 16 28 H 0.03 0.62 5.58 -51.93 -0.29 0.33 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 31 H 0.40 3.87 8.52 -40.82 -0.35 3.52 16 32 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 1.30 6.30 -51.93 -0.33 0.97 16 35 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 36 H 0.10 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.03 0.71 8.03 -51.93 -0.42 0.30 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -33.32 333.28 -8.50 -41.81 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.21 Total: 0.50 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.22 Total: -4.41 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.04 Total: -52.47 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.32 -8.50 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015527134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.501 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds