Wall clock time and date at job start Tue Mar 31 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47401 * 264.53761 * 3 2 1 5 5 H 1.48498 * 109.46765 * 24.53715 * 3 2 1 6 6 H 1.48501 * 109.46960 * 144.53587 * 3 2 1 7 7 C 1.38816 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00052 * 337.63065 * 7 2 1 9 9 N 1.36934 * 119.99774 * 157.63352 * 7 2 1 10 10 C 1.47431 * 125.65270 * 341.47506 * 9 7 2 11 11 C 1.54909 * 104.83325 * 204.16426 * 10 9 7 12 12 C 1.55159 * 101.58465 * 322.99079 * 11 10 9 13 13 H 1.09004 * 110.87230 * 277.06958 * 12 11 10 14 14 N 1.46495 * 110.72207 * 153.86202 * 12 11 10 15 15 C 1.34782 * 119.99965 * 159.74884 * 14 12 11 16 16 O 1.21274 * 119.99726 * 0.27685 * 15 14 12 17 17 C 1.50703 * 120.00021 * 180.27669 * 15 14 12 18 18 C 1.52994 * 109.46922 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.64655 * 305.42089 * 18 17 15 20 20 C 1.53026 * 109.64043 * 66.05911 * 18 17 15 21 21 C 1.50071 * 110.14990 * 169.11694 * 20 18 17 22 22 C 1.29447 * 124.07181 * 342.87142 * 21 20 18 23 23 C 1.50065 * 124.07794 * 0.46714 * 22 21 20 24 24 C 1.53027 * 110.14526 * 342.86937 * 23 22 21 25 25 C 1.47032 * 125.64818 * 161.51716 * 9 7 2 26 26 H 0.97000 * 120.00408 * 359.97438 * 1 2 3 27 27 H 1.08999 * 110.36191 * 323.00313 * 10 9 7 28 28 H 1.08997 * 110.36467 * 85.33098 * 10 9 7 29 29 H 1.09000 * 111.00509 * 204.91286 * 11 10 9 30 30 H 1.09005 * 111.00258 * 81.05852 * 11 10 9 31 31 H 0.97004 * 120.00302 * 340.02582 * 14 12 11 32 32 H 1.08993 * 109.46958 * 300.00469 * 17 15 14 33 33 H 1.09005 * 109.46862 * 60.00329 * 17 15 14 34 34 H 1.08997 * 109.35885 * 289.32776 * 20 18 17 35 35 H 1.09005 * 109.36031 * 48.91211 * 20 18 17 36 36 H 1.07997 * 117.96273 * 162.88755 * 21 20 18 37 37 H 1.08000 * 117.95721 * 180.49037 * 22 21 20 38 38 H 1.08995 * 109.36076 * 222.66447 * 23 22 21 39 39 H 1.08995 * 109.25091 * 103.00476 * 23 22 21 40 40 H 1.08999 * 109.64295 * 289.74907 * 24 23 22 41 41 H 1.09004 * 109.81512 * 169.22588 * 24 23 22 42 42 H 1.09003 * 109.87954 * 59.48722 * 25 9 7 43 43 H 1.08996 * 109.87980 * 298.32423 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3946 2.6832 0.5814 6 1 3.4852 1.4762 0.8123 7 6 2.0101 -1.2022 -0.0005 8 1 1.5311 -2.1024 0.3550 9 7 3.3022 -1.2466 -0.4518 10 6 3.9506 -0.2320 -1.3027 11 6 5.0953 -0.9895 -2.0207 12 6 5.5799 -1.9523 -0.9046 13 1 6.2743 -1.4490 -0.2319 14 7 6.1970 -3.1482 -1.4836 15 6 7.0316 -3.9025 -0.7412 16 8 7.2677 -3.5940 0.4076 17 6 7.6713 -5.1292 -1.3388 18 6 8.5661 -5.7982 -0.2936 19 1 9.2828 -5.0737 0.0930 20 6 7.7053 -6.3377 0.8509 21 6 8.5271 -7.2203 1.7441 22 6 9.6667 -7.7335 1.4070 23 6 10.3301 -7.5095 0.0797 24 6 9.3154 -6.9741 -0.9329 25 6 4.2725 -2.3144 -0.1688 26 1 -0.4851 0.8400 0.0004 27 1 3.2414 0.1619 -2.0305 28 1 4.3548 0.5742 -0.6906 29 1 5.8899 -0.3054 -2.3186 30 1 4.7179 -1.5451 -2.8792 31 1 6.0081 -3.3950 -2.4025 32 1 6.8952 -5.8269 -1.6535 33 1 8.2729 -4.8418 -2.2012 34 1 7.3112 -5.5033 1.4309 35 1 6.8758 -6.9126 0.4391 36 1 8.1438 -7.4412 2.7293 37 1 10.1712 -8.3623 2.1257 38 1 10.7397 -8.4521 -0.2832 39 1 11.1373 -6.7869 0.1988 40 1 8.6079 -7.7611 -1.1938 41 1 9.8328 -6.6344 -1.8302 42 1 3.8923 -3.2676 -0.5361 43 1 4.4553 -2.3743 0.9040 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015527134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:49 Heat of formation + Delta-G solvation = -33.013069 kcal Electronic energy + Delta-G solvation = -21731.332996 eV Core-core repulsion = 18582.690284 eV Total energy + Delta-G solvation = -3148.642712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15873 -39.63093 -38.67733 -35.60701 -34.10639 -33.62547 -31.57757 -31.35933 -29.71993 -28.04587 -26.04544 -24.09699 -22.84489 -22.69320 -21.52926 -21.07178 -19.09225 -18.83195 -17.87565 -17.45555 -17.19809 -16.83316 -16.16791 -15.91557 -15.44187 -15.24099 -15.02355 -14.60669 -14.21046 -14.11548 -13.94122 -13.67367 -13.60780 -13.21440 -13.13971 -13.05528 -12.86761 -12.61546 -12.43365 -12.36814 -12.12428 -11.67198 -11.60646 -11.52040 -11.46071 -10.98646 -10.85966 -10.62805 -10.06329 -9.81754 -9.11206 -8.21666 -5.49597 1.27460 1.38526 1.43625 1.47229 1.73391 2.20412 2.38220 3.01212 3.32752 3.60491 3.74376 3.81165 3.86168 3.91479 4.12523 4.17534 4.31238 4.34870 4.45887 4.50694 4.51701 4.62330 4.77851 4.78504 4.81337 4.85584 4.90523 4.92951 4.95666 5.03594 5.08942 5.13919 5.17775 5.27203 5.41025 5.54115 5.57755 5.63801 5.81217 6.05699 6.11260 6.66033 6.71614 7.37742 7.48918 8.03905 8.98293 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.003348 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.028552 B = 8359.956912 C = 8686.942691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.035 4.035 3 Si 0.949 3.051 4 H -0.257 1.257 5 H -0.307 1.307 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.054 0.946 9 N -0.626 5.626 10 C 0.099 3.901 11 C -0.114 4.114 12 C 0.147 3.853 13 H 0.083 0.917 14 N -0.707 5.707 15 C 0.505 3.495 16 O -0.581 6.581 17 C -0.127 4.127 18 C -0.069 4.069 19 H 0.060 0.940 20 C -0.094 4.094 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.093 4.093 24 C -0.110 4.110 25 C 0.126 3.874 26 H 0.264 0.736 27 H 0.053 0.947 28 H 0.024 0.976 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.418 0.582 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.239 -13.569 -8.423 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.230 4.230 3 Si 0.777 3.223 4 H -0.182 1.182 5 H -0.235 1.235 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.072 0.928 9 N -0.353 5.353 10 C -0.026 4.026 11 C -0.152 4.152 12 C 0.040 3.960 13 H 0.101 0.899 14 N -0.360 5.360 15 C 0.293 3.707 16 O -0.461 6.461 17 C -0.166 4.166 18 C -0.088 4.088 19 H 0.078 0.922 20 C -0.131 4.131 21 C -0.188 4.188 22 C -0.179 4.179 23 C -0.129 4.129 24 C -0.147 4.147 25 C 0.000 4.000 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.256 0.744 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.052 0.948 43 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 23.201 -13.288 -7.584 27.792 hybrid contribution -0.735 0.838 0.703 1.318 sum 22.466 -12.449 -6.881 26.590 Atomic orbital electron populations 1.69959 1.07221 1.27469 1.55518 1.25655 0.95868 1.00826 1.00610 0.85915 0.77503 0.79838 0.79073 1.18220 1.23487 1.20178 1.18563 0.86176 0.94405 1.37868 0.92813 1.44846 1.09123 1.23836 1.57522 1.22130 0.94878 0.92528 0.93038 1.22953 0.97376 0.98012 0.96903 1.21626 0.92261 0.86421 0.95682 0.89939 1.45895 1.46695 1.26413 1.16999 1.21530 0.78088 0.85203 0.85833 1.90688 1.63281 1.72445 1.19672 1.21822 1.00924 0.93610 1.00270 1.20914 0.96554 0.97009 0.94279 0.92169 1.20578 0.97862 0.97895 0.96720 1.22150 0.97518 0.99395 0.99709 1.22272 0.96463 1.00170 0.99002 1.20511 0.98021 1.02055 0.92343 1.21668 0.98028 0.96785 0.98258 1.21777 0.89640 0.91786 0.96778 0.92666 0.92903 0.95867 0.87198 0.88372 0.74412 0.86780 0.85404 0.92582 0.91094 0.88752 0.87337 0.89375 0.90690 0.91086 0.89341 0.94846 0.97380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.29 13.97 21.65 0.30 -60.99 16 2 C -0.03 -2.10 5.43 84.86 0.46 -1.64 16 3 Si 0.95 47.48 24.27 68.60 1.66 49.15 16 4 H -0.26 -11.63 6.49 99.48 0.65 -10.98 16 5 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 6 H -0.28 -13.67 6.66 99.48 0.66 -13.01 16 7 C -0.24 -14.46 10.57 84.03 0.89 -13.57 16 8 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.63 -31.03 3.21 -691.96 -2.22 -33.24 16 10 C 0.10 4.05 4.69 86.85 0.41 4.46 16 11 C -0.11 -3.17 6.69 31.99 0.21 -2.95 16 12 C 0.15 4.56 3.24 46.18 0.15 4.71 16 13 H 0.08 2.81 7.69 -2.39 -0.02 2.79 16 14 N -0.71 -16.06 5.13 -436.91 -2.24 -18.30 16 15 C 0.50 12.36 7.59 87.66 0.67 13.03 16 16 O -0.58 -20.04 13.82 -3.01 -0.04 -20.08 16 17 C -0.13 -1.86 5.17 29.85 0.15 -1.70 16 18 C -0.07 -1.22 1.87 -10.66 -0.02 -1.24 16 19 H 0.06 1.33 7.93 -2.39 -0.02 1.31 16 20 C -0.09 -2.12 5.05 29.66 0.15 -1.97 16 21 C -0.17 -3.56 9.80 27.04 0.27 -3.30 16 22 C -0.16 -2.75 9.80 27.03 0.27 -2.48 16 23 C -0.09 -1.18 6.12 29.66 0.18 -1.00 16 24 C -0.11 -1.31 5.31 30.73 0.16 -1.15 16 25 C 0.13 5.31 6.99 86.73 0.61 5.92 16 26 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 27 H 0.05 2.27 6.63 -2.39 -0.02 2.26 16 28 H 0.02 0.99 5.58 -2.39 -0.01 0.98 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.10 2.33 8.00 -2.38 -0.02 2.31 16 31 H 0.42 6.32 8.52 -92.71 -0.79 5.53 16 32 H 0.11 1.28 8.09 -2.39 -0.02 1.26 16 33 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.68 6.30 -2.39 -0.02 1.66 16 35 H 0.07 1.50 8.06 -2.38 -0.02 1.48 16 36 H 0.09 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 41 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -77.17 333.28 2.11 -75.07 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.09 Total: 11.31 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.55 Total: -2.91 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -4.16 Total: -112.53 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.66 Total: 49.15 kcal Total: -77.17 2.11 -75.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015527134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.053 kcal (2) G-P(sol) polarization free energy of solvation -77.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds