Wall clock time and date at job start Tue Mar 31 2020 00:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99556 * 2 1 4 4 H 1.48502 * 109.47080 * 274.98636 * 3 2 1 5 5 H 1.48493 * 109.47394 * 34.98638 * 3 2 1 6 6 H 1.48505 * 109.47258 * 154.98899 * 3 2 1 7 7 C 1.38810 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99888 * 187.05770 * 7 2 1 9 9 N 1.36942 * 119.99668 * 7.05261 * 7 2 1 10 10 C 1.47011 * 125.64952 * 354.79263 * 9 7 2 11 11 C 1.54326 * 107.27193 * 178.97586 * 10 9 7 12 12 C 1.55158 * 102.94047 * 337.80850 * 11 10 9 13 13 H 1.09004 * 111.00745 * 277.38889 * 12 11 10 14 14 N 1.46495 * 111.00484 * 153.57819 * 12 11 10 15 15 C 1.34782 * 120.00108 * 158.18145 * 14 12 11 16 16 O 1.21274 * 120.00007 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99685 * 179.97438 * 15 14 12 18 18 C 1.51643 * 108.53907 * 55.84371 * 17 15 14 19 19 C 1.53032 * 110.84427 * 187.37336 * 18 17 15 20 20 C 1.51370 * 108.76410 * 274.48822 * 19 18 17 21 21 C 1.29529 * 120.36020 * 71.78642 * 20 19 18 22 22 C 1.51372 * 120.35921 * 0.02597 * 21 20 19 23 23 C 1.51851 * 108.64630 * 179.97438 * 17 15 14 24 24 C 1.47470 * 125.62287 * 174.79305 * 9 7 2 25 25 H 0.96997 * 120.00914 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.88402 * 59.55800 * 10 9 7 27 27 H 1.09000 * 109.88772 * 298.39183 * 10 9 7 28 28 H 1.09003 * 110.72211 * 219.44912 * 11 10 9 29 29 H 1.09002 * 110.87528 * 96.23860 * 11 10 9 30 30 H 0.97002 * 120.00574 * 338.17396 * 14 12 11 31 31 H 1.08997 * 108.61130 * 298.01481 * 17 15 14 32 32 H 1.08994 * 109.06747 * 67.08796 * 18 17 15 33 33 H 1.08995 * 109.28114 * 307.79537 * 18 17 15 34 34 H 1.08995 * 109.61552 * 154.66070 * 19 18 17 35 35 H 1.08999 * 109.61438 * 34.31431 * 19 18 17 36 36 H 1.08004 * 119.82152 * 251.81615 * 20 19 18 37 37 H 1.08003 * 119.81548 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.61606 * 47.84117 * 22 21 20 39 39 H 1.09004 * 109.60957 * 168.18603 * 22 21 20 40 40 H 1.09005 * 109.21871 * 52.21237 * 23 17 15 41 41 H 1.08991 * 109.22791 * 292.86489 * 23 17 15 42 42 H 1.09001 * 110.34975 * 85.25558 * 24 9 7 43 43 H 1.08999 * 110.41001 * 322.91525 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1144 9 7 1.3334 -2.3835 -0.1467 10 6 -0.1281 -2.5323 -0.2033 11 6 -0.4286 -4.0332 -0.3999 12 6 0.8913 -4.5748 -1.0097 13 1 0.9257 -4.3996 -2.0850 14 7 1.0648 -5.9975 -0.7066 15 6 1.8718 -6.7566 -1.4741 16 8 2.4540 -6.2619 -2.4160 17 6 2.0507 -8.2200 -1.1618 18 6 0.6851 -8.8791 -1.1415 19 6 0.7857 -10.3253 -0.6513 20 6 1.1221 -11.2160 -1.8281 21 6 2.3048 -11.1852 -2.3554 22 6 3.3658 -10.2587 -1.8011 23 6 3.0040 -8.8207 -2.1798 24 6 1.9503 -3.7169 -0.2733 25 1 -0.4851 0.8399 0.0004 26 1 -0.5266 -1.9614 -1.0420 27 1 -0.5726 -2.1843 0.7292 28 1 -1.2590 -4.1728 -1.0921 29 1 -0.6388 -4.5155 0.5547 30 1 0.5990 -6.3933 0.0466 31 1 2.4950 -8.3124 -0.1708 32 1 0.2703 -8.8698 -2.1494 33 1 0.0256 -8.3202 -0.4776 34 1 -0.1671 -10.6327 -0.2205 35 1 1.5698 -10.4026 0.1019 36 1 0.3718 -11.8804 -2.2306 37 1 2.5352 -11.8243 -3.1951 38 1 3.4034 -10.3531 -0.7159 39 1 4.3359 -10.5185 -2.2248 40 1 3.9131 -8.2204 -2.2179 41 1 2.5305 -8.8160 -3.1614 42 1 2.1575 -4.1339 0.7123 43 1 2.8662 -3.6578 -0.8613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016281042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:41 Heat of formation + Delta-G solvation = -9.435980 kcal Electronic energy + Delta-G solvation = -21897.348414 eV Core-core repulsion = 18749.728081 eV Total energy + Delta-G solvation = -3147.620333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.24843 -38.22622 -37.03573 -34.07174 -32.93285 -32.06639 -31.60246 -29.14868 -27.32208 -25.89984 -24.40748 -24.07123 -21.76449 -20.35351 -20.14433 -19.67188 -18.24580 -17.38828 -16.72434 -16.42895 -15.82782 -14.96886 -14.62703 -14.52915 -14.23953 -13.89318 -13.59967 -13.22553 -13.06694 -12.84632 -12.42004 -12.27235 -12.16767 -11.89109 -11.78257 -11.47960 -10.98704 -10.93983 -10.87726 -10.82626 -10.72754 -10.53364 -10.33143 -10.07810 -9.89096 -9.73730 -9.55211 -9.18766 -8.68712 -8.55988 -6.82458 -5.71638 -3.03802 2.07331 2.84126 3.36841 3.43010 3.48127 3.49720 4.38341 4.51752 4.57896 4.63986 4.82932 4.89367 4.96781 5.17021 5.24653 5.30734 5.36131 5.44267 5.46728 5.52956 5.59061 5.65208 5.73981 5.76907 5.83053 5.89211 5.96857 6.05304 6.20715 6.22505 6.34909 6.42834 6.44633 6.62741 6.68539 6.72731 7.00907 7.52681 7.60507 7.74851 7.83556 8.25731 8.47011 9.22707 9.82882 10.48379 11.40728 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043128 B = 0.003299 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.080308 B = 8486.354044 C = 8917.940194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.094 0.906 14 N -0.717 5.717 15 C 0.510 3.490 16 O -0.539 6.539 17 C -0.103 4.103 18 C -0.106 4.106 19 C -0.090 4.090 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.093 4.093 23 C -0.095 4.095 24 C 0.130 3.870 25 H 0.252 0.748 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.396 0.604 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -22.780 -0.756 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.022 3.978 13 H 0.112 0.888 14 N -0.368 5.368 15 C 0.296 3.704 16 O -0.416 6.416 17 C -0.124 4.124 18 C -0.144 4.144 19 C -0.127 4.127 20 C -0.180 4.180 21 C -0.173 4.173 22 C -0.130 4.130 23 C -0.133 4.133 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.230 0.770 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.590 -22.156 -1.422 22.210 hybrid contribution 0.114 0.677 0.359 0.775 sum 0.704 -21.479 -1.062 21.517 Atomic orbital electron populations 1.69957 1.04917 1.25081 1.56951 1.24820 0.95728 0.97670 1.02149 0.86102 0.78685 0.83491 0.77540 1.21568 1.21778 1.20614 1.19080 0.91203 0.82466 1.42835 0.90374 1.44407 1.01621 1.00947 1.86142 1.21146 0.84640 0.87722 1.01133 1.23167 0.95747 1.00292 0.99562 1.22286 0.96765 0.78143 1.00614 0.88808 1.46072 1.47859 1.10420 1.32440 1.20701 0.78747 0.88478 0.82462 1.90704 1.46869 1.74573 1.29449 1.20989 0.97733 0.91895 1.01810 1.21258 0.95233 0.95221 1.02717 1.20799 1.02052 0.93517 0.96339 1.22534 0.97240 0.99772 0.98423 1.22593 0.95563 0.99185 0.99944 1.20856 0.97490 0.93811 1.00836 1.21084 0.99322 0.94297 0.98559 1.21830 0.95025 0.86661 0.96260 0.93740 0.93118 0.93791 0.91675 0.92098 0.76991 0.88936 0.91148 0.91117 0.91173 0.90843 0.87637 0.87641 0.91010 0.91234 0.90583 0.91183 0.96418 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.36 55.49 0.57 -26.69 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.52 10.26 -15.06 -0.15 -6.68 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 9 N -0.60 -15.86 3.40 -170.04 -0.58 -16.44 16 10 C 0.18 4.33 5.38 -3.07 -0.02 4.31 16 11 C -0.15 -2.68 6.59 -24.90 -0.16 -2.85 16 12 C 0.13 2.34 3.37 -65.78 -0.22 2.11 16 13 H 0.09 1.93 7.63 -51.93 -0.40 1.53 16 14 N -0.72 -10.19 5.02 -51.73 -0.26 -10.45 16 15 C 0.51 7.50 7.14 -10.98 -0.08 7.42 16 16 O -0.54 -10.31 15.45 5.56 0.09 -10.23 16 17 C -0.10 -1.07 2.05 -93.04 -0.19 -1.26 16 18 C -0.11 -0.91 4.85 -27.40 -0.13 -1.04 16 19 C -0.09 -0.64 5.60 -27.54 -0.15 -0.80 16 20 C -0.16 -1.24 9.35 -35.29 -0.33 -1.57 16 21 C -0.15 -1.24 9.34 -35.29 -0.33 -1.57 16 22 C -0.09 -0.76 5.62 -27.53 -0.15 -0.92 16 23 C -0.09 -1.00 4.30 -27.29 -0.12 -1.12 16 24 C 0.13 2.85 6.93 -2.50 -0.02 2.83 16 25 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 27 H 0.04 1.16 7.61 -51.93 -0.40 0.76 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 0.97 7.99 -51.93 -0.42 0.55 16 30 H 0.40 4.40 7.53 -40.82 -0.31 4.09 16 31 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 32 H 0.07 0.68 7.86 -51.93 -0.41 0.28 16 33 H 0.07 0.54 6.98 -51.93 -0.36 0.17 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 36 H 0.11 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 38 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.91 7.78 -51.93 -0.40 0.50 16 41 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -32.58 334.17 -9.41 -41.98 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.09 Total: 0.77 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.16 Total: -1.44 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.26 Total: -53.57 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.58 -9.41 -41.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016281042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.549 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds