Wall clock time and date at job start Tue Mar 31 2020 00:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99556 * 2 1 4 4 H 1.48502 * 109.47080 * 274.98636 * 3 2 1 5 5 H 1.48493 * 109.47394 * 34.98638 * 3 2 1 6 6 H 1.48505 * 109.47258 * 154.98899 * 3 2 1 7 7 C 1.38810 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99888 * 187.05770 * 7 2 1 9 9 N 1.36942 * 119.99668 * 7.05261 * 7 2 1 10 10 C 1.47011 * 125.64952 * 354.79263 * 9 7 2 11 11 C 1.54326 * 107.27193 * 178.97586 * 10 9 7 12 12 C 1.55158 * 102.94047 * 337.80850 * 11 10 9 13 13 H 1.09004 * 111.00745 * 277.38889 * 12 11 10 14 14 N 1.46495 * 111.00484 * 153.57819 * 12 11 10 15 15 C 1.34782 * 120.00108 * 158.18145 * 14 12 11 16 16 O 1.21274 * 120.00007 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99685 * 179.97438 * 15 14 12 18 18 C 1.51643 * 108.53907 * 55.84371 * 17 15 14 19 19 C 1.53032 * 110.84427 * 187.37336 * 18 17 15 20 20 C 1.51370 * 108.76410 * 274.48822 * 19 18 17 21 21 C 1.29529 * 120.36020 * 71.78642 * 20 19 18 22 22 C 1.51372 * 120.35921 * 0.02597 * 21 20 19 23 23 C 1.51851 * 108.64630 * 179.97438 * 17 15 14 24 24 C 1.47470 * 125.62287 * 174.79305 * 9 7 2 25 25 H 0.96997 * 120.00914 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.88402 * 59.55800 * 10 9 7 27 27 H 1.09000 * 109.88772 * 298.39183 * 10 9 7 28 28 H 1.09003 * 110.72211 * 219.44912 * 11 10 9 29 29 H 1.09002 * 110.87528 * 96.23860 * 11 10 9 30 30 H 0.97002 * 120.00574 * 338.17396 * 14 12 11 31 31 H 1.08997 * 108.61130 * 298.01481 * 17 15 14 32 32 H 1.08994 * 109.06747 * 67.08796 * 18 17 15 33 33 H 1.08995 * 109.28114 * 307.79537 * 18 17 15 34 34 H 1.08995 * 109.61552 * 154.66070 * 19 18 17 35 35 H 1.08999 * 109.61438 * 34.31431 * 19 18 17 36 36 H 1.08004 * 119.82152 * 251.81615 * 20 19 18 37 37 H 1.08003 * 119.81548 * 180.02562 * 21 20 19 38 38 H 1.08999 * 109.61606 * 47.84117 * 22 21 20 39 39 H 1.09004 * 109.60957 * 168.18603 * 22 21 20 40 40 H 1.09005 * 109.21871 * 52.21237 * 23 17 15 41 41 H 1.08991 * 109.22791 * 292.86489 * 23 17 15 42 42 H 1.09001 * 110.34975 * 85.25558 * 24 9 7 43 43 H 1.08999 * 110.41001 * 322.91525 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1144 9 7 1.3334 -2.3835 -0.1467 10 6 -0.1281 -2.5323 -0.2033 11 6 -0.4286 -4.0332 -0.3999 12 6 0.8913 -4.5748 -1.0097 13 1 0.9257 -4.3996 -2.0850 14 7 1.0648 -5.9975 -0.7066 15 6 1.8718 -6.7566 -1.4741 16 8 2.4540 -6.2619 -2.4160 17 6 2.0507 -8.2200 -1.1618 18 6 0.6851 -8.8791 -1.1415 19 6 0.7857 -10.3253 -0.6513 20 6 1.1221 -11.2160 -1.8281 21 6 2.3048 -11.1852 -2.3554 22 6 3.3658 -10.2587 -1.8011 23 6 3.0040 -8.8207 -2.1798 24 6 1.9503 -3.7169 -0.2733 25 1 -0.4851 0.8399 0.0004 26 1 -0.5266 -1.9614 -1.0420 27 1 -0.5726 -2.1843 0.7292 28 1 -1.2590 -4.1728 -1.0921 29 1 -0.6388 -4.5155 0.5547 30 1 0.5990 -6.3933 0.0466 31 1 2.4950 -8.3124 -0.1708 32 1 0.2703 -8.8698 -2.1494 33 1 0.0256 -8.3202 -0.4776 34 1 -0.1671 -10.6327 -0.2205 35 1 1.5698 -10.4026 0.1019 36 1 0.3718 -11.8804 -2.2306 37 1 2.5352 -11.8243 -3.1951 38 1 3.4034 -10.3531 -0.7159 39 1 4.3359 -10.5185 -2.2248 40 1 3.9131 -8.2204 -2.2179 41 1 2.5305 -8.8160 -3.1614 42 1 2.1575 -4.1339 0.7123 43 1 2.8662 -3.6578 -0.8613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016281042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:40 Heat of formation + Delta-G solvation = -29.870407 kcal Electronic energy + Delta-G solvation = -21898.234517 eV Core-core repulsion = 18749.728081 eV Total energy + Delta-G solvation = -3148.506436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37153 -39.40489 -38.43345 -35.66046 -34.10256 -33.28712 -32.63190 -30.98890 -28.95232 -27.01858 -26.12519 -24.80427 -22.88922 -22.06065 -21.68179 -20.81807 -19.05960 -18.84417 -18.13564 -17.47161 -17.03045 -16.67881 -16.07419 -15.88573 -15.47184 -15.15546 -14.67458 -14.27519 -14.22374 -14.06944 -13.83158 -13.79201 -13.58913 -13.12110 -12.96341 -12.79886 -12.60677 -12.37562 -12.14200 -12.10448 -12.03379 -11.84311 -11.70614 -11.60766 -11.46733 -11.17959 -10.75309 -10.71173 -10.09423 -9.83403 -8.93771 -7.89801 -5.24687 1.43932 1.46784 1.48646 1.55285 1.66921 2.14993 2.48999 3.29140 3.59314 3.66715 3.70426 3.83601 3.93024 4.04973 4.17118 4.19643 4.25460 4.32318 4.50791 4.56191 4.58517 4.66033 4.72542 4.74842 4.85930 4.94250 4.96512 4.97118 5.07998 5.14309 5.22400 5.28006 5.35716 5.40192 5.45149 5.55993 5.62781 5.71600 5.87048 6.11593 6.16558 6.61832 7.07033 7.31446 7.72468 8.36281 9.20805 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043128 B = 0.003299 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.080308 B = 8486.354044 C = 8917.940194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.627 5.627 10 C 0.183 3.817 11 C -0.126 4.126 12 C 0.145 3.855 13 H 0.069 0.931 14 N -0.702 5.702 15 C 0.507 3.493 16 O -0.589 6.589 17 C -0.091 4.091 18 C -0.103 4.103 19 C -0.087 4.087 20 C -0.163 4.163 21 C -0.168 4.168 22 C -0.086 4.086 23 C -0.093 4.093 24 C 0.129 3.871 25 H 0.249 0.751 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.417 0.583 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -24.892 0.454 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.165 4.165 12 C 0.039 3.961 13 H 0.087 0.913 14 N -0.354 5.354 15 C 0.295 3.705 16 O -0.468 6.468 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.124 4.124 20 C -0.181 4.181 21 C -0.186 4.186 22 C -0.123 4.123 23 C -0.131 4.131 24 C 0.002 3.998 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.034 0.966 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.255 0.745 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.267 -24.326 -0.183 24.328 hybrid contribution 0.247 1.316 -0.041 1.339 sum 0.513 -23.010 -0.225 23.017 Atomic orbital electron populations 1.70158 1.06171 1.25513 1.57607 1.25656 0.96696 1.00909 1.02158 0.85070 0.77883 0.79128 0.77319 1.21506 1.21555 1.19371 1.19418 0.91553 0.83980 1.42911 0.90541 1.44699 1.02756 1.01839 1.86085 1.20952 0.83463 0.91628 0.98188 1.22980 0.96002 0.95650 1.01864 1.21755 0.95578 0.80124 0.98672 0.91285 1.45830 1.47992 1.08425 1.33134 1.21564 0.77404 0.90128 0.81355 1.90693 1.48703 1.75811 1.31628 1.21032 0.99153 0.88346 1.02709 1.21261 0.93849 0.96422 1.02528 1.20815 1.03353 0.92025 0.96215 1.22746 0.97200 0.99713 0.98458 1.22677 0.95811 0.99597 1.00484 1.20798 0.97904 0.91953 1.01695 1.21043 0.98360 0.95794 0.97918 1.21937 0.95159 0.85772 0.96911 0.94139 0.96779 0.96554 0.89317 0.88790 0.74535 0.86482 0.92520 0.89452 0.89514 0.89876 0.86801 0.87211 0.89706 0.90736 0.92573 0.93084 0.95018 0.95987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.38 10.36 21.65 0.22 -57.16 16 2 C -0.06 -3.54 5.48 84.86 0.46 -3.08 16 3 Si 0.98 46.83 29.56 68.60 2.03 48.86 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.25 -14.63 10.26 84.03 0.86 -13.76 16 8 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 9 N -0.63 -33.55 3.40 -691.89 -2.35 -35.90 16 10 C 0.18 9.00 5.38 86.73 0.47 9.47 16 11 C -0.13 -4.33 6.59 31.78 0.21 -4.12 16 12 C 0.15 5.22 3.37 46.38 0.16 5.38 16 13 H 0.07 2.87 7.63 -2.38 -0.02 2.85 16 14 N -0.70 -18.36 5.02 -435.97 -2.19 -20.55 16 15 C 0.51 14.29 7.14 87.66 0.63 14.92 16 16 O -0.59 -22.82 15.45 -3.01 -0.05 -22.87 16 17 C -0.09 -1.69 2.05 -12.36 -0.03 -1.71 16 18 C -0.10 -1.44 4.85 30.16 0.15 -1.29 16 19 C -0.09 -0.92 5.60 30.07 0.17 -0.75 16 20 C -0.16 -2.06 9.35 27.37 0.26 -1.81 16 21 C -0.17 -2.35 9.34 27.37 0.26 -2.09 16 22 C -0.09 -1.25 5.62 30.08 0.17 -1.08 16 23 C -0.09 -1.89 4.30 30.23 0.13 -1.76 16 24 C 0.13 5.67 6.93 86.85 0.60 6.27 16 25 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.01 0.78 7.30 -2.39 -0.02 0.76 16 27 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 28 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.09 2.64 7.99 -2.39 -0.02 2.62 16 30 H 0.42 7.60 7.53 -92.71 -0.70 6.90 16 31 H 0.12 1.66 7.90 -2.39 -0.02 1.64 16 32 H 0.06 0.98 7.86 -2.39 -0.02 0.96 16 33 H 0.09 0.95 6.98 -2.39 -0.02 0.93 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.76 6.70 -2.39 -0.02 0.74 16 36 H 0.11 1.24 8.06 -2.91 -0.02 1.21 16 37 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.08 1.01 6.69 -2.39 -0.02 1.00 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.99 16 40 H 0.06 1.35 7.78 -2.38 -0.02 1.33 16 41 H 0.05 1.22 7.85 -2.39 -0.02 1.20 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -73.78 334.17 2.45 -71.34 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.29 Total: 11.71 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.49 Total: 4.58 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -4.31 Total: -113.61 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -73.78 2.45 -71.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016281042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.469 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds