Wall clock time and date at job start Tue Mar 31 2020 00:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48498 * 109.46909 * 269.99778 * 3 2 1 5 5 H 1.48496 * 109.47226 * 30.00264 * 3 2 1 6 6 H 1.48505 * 109.46820 * 150.00154 * 3 2 1 7 7 C 1.38821 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99598 * 163.86401 * 7 2 1 9 9 N 1.36931 * 119.99949 * 343.86629 * 7 2 1 10 10 C 1.47162 * 120.71076 * 154.58554 * 9 7 2 11 11 C 1.53883 * 108.03094 * 132.74869 * 10 9 7 12 12 H 1.09008 * 112.58211 * 182.22664 * 11 10 9 13 13 C 1.54130 * 107.71428 * 306.32714 * 11 10 9 14 14 C 1.54283 * 104.88937 * 89.40745 * 13 11 10 15 15 C 1.54547 * 104.84989 * 359.81138 * 14 13 11 16 16 H 1.08993 * 112.18265 * 146.40294 * 15 14 13 17 17 C 1.49246 * 120.77003 * 334.66774 * 9 7 2 18 18 N 1.48302 * 107.20643 * 58.36539 * 11 10 9 19 19 C 1.34782 * 128.08023 * 106.70688 * 18 11 10 20 20 O 1.21281 * 120.00365 * 179.40316 * 19 18 11 21 21 C 1.50706 * 119.99573 * 359.67443 * 19 18 11 22 22 C 1.52997 * 109.46852 * 179.72655 * 21 19 18 23 23 C 1.53005 * 109.46771 * 179.97438 * 22 21 19 24 24 C 1.52996 * 117.50139 * 243.74488 * 23 22 21 25 25 C 1.53005 * 117.49680 * 175.08505 * 23 22 21 26 26 H 0.96998 * 120.00376 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.74901 * 13.11645 * 10 9 7 28 28 H 1.08997 * 109.79517 * 252.41171 * 10 9 7 29 29 H 1.09005 * 110.50395 * 330.47283 * 13 11 10 30 30 H 1.08996 * 110.28209 * 208.22867 * 13 11 10 31 31 H 1.08996 * 110.36523 * 240.96800 * 14 13 11 32 32 H 1.08999 * 110.45342 * 118.70179 * 14 13 11 33 33 H 1.08998 * 110.51923 * 107.82416 * 17 9 7 34 34 H 1.08997 * 109.74645 * 346.59765 * 17 9 7 35 35 H 1.09000 * 109.46630 * 299.72828 * 21 19 18 36 36 H 1.08997 * 109.46714 * 59.72577 * 21 19 18 37 37 H 1.08998 * 109.47469 * 300.00303 * 22 21 19 38 38 H 1.08999 * 109.46819 * 60.00651 * 22 21 19 39 39 H 1.08996 * 115.54628 * 29.42209 * 23 22 21 40 40 H 1.09007 * 117.49752 * 0.02562 * 24 23 22 41 41 H 1.09001 * 117.49560 * 145.01919 * 24 23 22 42 42 H 1.08989 * 117.50114 * 214.98291 * 25 23 22 43 43 H 1.09003 * 117.49654 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0584 -1.2207 -0.2594 9 7 1.3661 -2.3646 0.3306 10 6 1.8520 -3.6609 -0.1684 11 6 1.8960 -4.6413 1.0169 12 1 2.2847 -5.6203 0.7362 13 6 2.7283 -3.9863 2.1367 14 6 1.7077 -3.1870 2.9733 15 6 0.3491 -3.4290 2.2776 16 1 -0.4777 -3.4554 2.9872 17 6 0.1549 -2.3452 1.2024 18 7 0.5228 -4.7215 1.5712 19 6 -0.3593 -5.7348 1.4633 20 8 -1.4491 -5.6487 1.9884 21 6 0.0109 -6.9775 0.6952 22 6 -1.1560 -7.9664 0.7322 23 6 -0.7803 -9.2277 -0.0482 24 6 -1.5958 -9.5523 -1.3013 25 6 -1.7750 -10.3903 -0.0329 26 1 -0.4850 0.8400 0.0004 27 1 2.8518 -3.5434 -0.5864 28 1 1.1749 -4.0391 -0.9342 29 1 3.4784 -3.3179 1.7138 30 1 3.2051 -4.7510 2.7497 31 1 1.9560 -2.1257 2.9617 32 1 1.6808 -3.5583 3.9977 33 1 -0.7397 -2.5618 0.6185 34 1 0.0584 -1.3688 1.6770 35 1 0.2307 -6.7132 -0.3392 36 1 0.8902 -7.4358 1.1479 37 1 -1.3758 -8.2305 1.7665 38 1 -2.0351 -7.5079 0.2795 39 1 0.2814 -9.4739 -0.0608 40 1 -2.3997 -8.8669 -1.5702 41 1 -1.0705 -10.0123 -2.1384 42 1 -1.3676 -11.4012 -0.0360 43 1 -2.6971 -10.2563 0.5327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017420701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:42 Heat of formation + Delta-G solvation = 15.443420 kcal Electronic energy + Delta-G solvation = -22593.255799 eV Core-core repulsion = 19446.714318 eV Total energy + Delta-G solvation = -3146.541481 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09017 -38.18518 -37.22583 -34.00697 -32.31104 -31.19732 -30.72447 -30.26569 -26.35880 -24.94528 -23.64529 -22.75715 -22.47467 -20.73506 -20.40826 -19.87613 -18.06802 -17.18523 -16.04250 -15.80713 -15.29139 -15.05295 -14.86428 -14.45951 -13.94811 -13.60029 -13.33952 -12.95080 -12.74421 -12.69543 -12.14641 -12.08947 -11.81882 -11.69794 -11.48268 -11.31985 -11.17135 -11.12269 -10.83285 -10.56115 -10.50985 -10.38033 -10.29604 -9.99310 -9.94736 -9.80455 -9.67608 -9.29386 -8.56541 -8.16553 -6.72866 -5.81492 -3.23153 3.09647 3.34924 3.41022 3.42894 3.44165 3.70443 4.44522 4.54094 4.79255 4.83772 4.88099 5.08156 5.18280 5.28149 5.35584 5.39622 5.41125 5.49346 5.51733 5.56059 5.67847 5.80241 5.80455 5.85685 5.93695 6.00020 6.12055 6.14180 6.21201 6.35364 6.36221 6.40575 6.45623 6.59751 6.65687 6.77462 6.97358 7.28611 7.54960 7.72737 8.17983 8.32599 8.65204 9.11021 9.76042 10.34229 11.27104 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.004202 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.150749 B = 6662.309828 C = 6842.895157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.138 3.862 11 C 0.108 3.892 12 H 0.085 0.915 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.104 3.896 16 H 0.085 0.915 17 C 0.173 3.827 18 N -0.607 5.607 19 C 0.528 3.472 20 O -0.558 6.558 21 C -0.131 4.131 22 C -0.072 4.072 23 C -0.152 4.152 24 C -0.182 4.182 25 C -0.183 4.183 26 H 0.254 0.746 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.027 0.973 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -15.378 1.847 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.011 3.989 11 C 0.002 3.998 12 H 0.103 0.897 13 C -0.149 4.149 14 C -0.150 4.150 15 C 0.001 3.999 16 H 0.103 0.897 17 C 0.048 3.952 18 N -0.340 5.340 19 C 0.317 3.683 20 O -0.438 6.438 21 C -0.171 4.171 22 C -0.110 4.110 23 C -0.170 4.170 24 C -0.219 4.219 25 C -0.220 4.220 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.203 -15.244 2.099 15.544 hybrid contribution 0.445 0.904 -0.206 1.028 sum 2.647 -14.340 1.892 14.705 Atomic orbital electron populations 1.70017 1.05231 1.25574 1.54037 1.25014 0.95276 0.98316 1.01050 0.86309 0.79073 0.83762 0.77683 1.21499 1.21605 1.20485 1.19148 0.92255 0.84438 1.42187 0.91407 1.44569 1.31165 1.00793 1.54908 1.21427 0.98149 0.87171 0.92174 1.22915 0.81752 0.98828 0.96263 0.89670 1.22229 0.97935 0.98555 0.96210 1.22299 0.94265 1.01723 0.96729 1.23185 0.97392 0.83704 0.95650 0.89667 1.21633 0.88311 0.95955 0.89306 1.49272 1.15210 1.16741 1.52808 1.20199 0.83759 0.83584 0.80784 1.90657 1.22340 1.81380 1.49394 1.21584 1.00111 0.93883 1.01484 1.20908 0.97490 0.92119 1.00480 1.22365 0.97263 0.96609 1.00735 1.23060 1.03290 1.03746 0.91773 1.22964 1.01475 0.95771 1.01781 0.93541 0.91912 0.96456 0.89926 0.93010 0.89609 0.93181 0.95507 0.88973 0.89045 0.89468 0.91003 0.91066 0.87830 0.88691 0.89020 0.89041 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.79 11.08 55.49 0.62 -25.18 16 2 C 0.00 0.05 4.98 -17.43 -0.09 -0.03 16 3 Si 0.90 21.04 29.58 -169.99 -5.03 16.01 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.49 9.66 -15.06 -0.15 -6.63 16 8 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 9 N -0.59 -13.95 2.32 -169.36 -0.39 -14.34 16 10 C 0.14 2.69 6.01 -3.22 -0.02 2.67 16 11 C 0.11 1.73 3.96 -65.89 -0.26 1.47 16 12 H 0.09 1.10 7.41 -51.92 -0.38 0.71 16 13 C -0.11 -1.73 6.16 -25.47 -0.16 -1.89 16 14 C -0.11 -1.94 6.19 -25.25 -0.16 -2.10 16 15 C 0.10 2.07 4.07 -65.66 -0.27 1.81 16 16 H 0.09 1.73 7.93 -51.93 -0.41 1.31 16 17 C 0.17 4.12 4.75 -2.05 -0.01 4.11 16 18 N -0.61 -11.05 2.74 -153.28 -0.42 -11.47 16 19 C 0.53 9.49 7.92 -10.98 -0.09 9.40 16 20 O -0.56 -11.97 16.29 5.56 0.09 -11.88 16 21 C -0.13 -1.72 4.66 -27.88 -0.13 -1.85 16 22 C -0.07 -0.90 4.79 -26.73 -0.13 -1.03 16 23 C -0.15 -1.53 5.73 -90.62 -0.52 -2.05 16 24 C -0.18 -1.73 10.18 -26.70 -0.27 -2.00 16 25 C -0.18 -1.68 10.26 -26.69 -0.27 -1.95 16 26 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 1.35 7.83 -51.93 -0.41 0.95 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.63 7.86 -51.93 -0.41 1.22 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.40 6.31 -51.93 -0.33 2.07 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 0.96 8.02 -51.93 -0.42 0.54 16 37 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 39 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 40 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.72 8.14 -51.94 -0.42 0.30 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -30.30 339.30 -9.90 -40.20 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.36 Total: 1.61 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.51 Total: -0.07 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.20 Total: -50.99 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.30 -9.90 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017420701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.644 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds