Wall clock time and date at job start Tue Mar 31 2020 00:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99939 * 2 1 4 4 H 1.48498 * 109.46909 * 269.99778 * 3 2 1 5 5 H 1.48496 * 109.47226 * 30.00264 * 3 2 1 6 6 H 1.48505 * 109.46820 * 150.00154 * 3 2 1 7 7 C 1.38821 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99598 * 163.86401 * 7 2 1 9 9 N 1.36931 * 119.99949 * 343.86629 * 7 2 1 10 10 C 1.47162 * 120.71076 * 154.58554 * 9 7 2 11 11 C 1.53883 * 108.03094 * 132.74869 * 10 9 7 12 12 H 1.09008 * 112.58211 * 182.22664 * 11 10 9 13 13 C 1.54130 * 107.71428 * 306.32714 * 11 10 9 14 14 C 1.54283 * 104.88937 * 89.40745 * 13 11 10 15 15 C 1.54547 * 104.84989 * 359.81138 * 14 13 11 16 16 H 1.08993 * 112.18265 * 146.40294 * 15 14 13 17 17 C 1.49246 * 120.77003 * 334.66774 * 9 7 2 18 18 N 1.48302 * 107.20643 * 58.36539 * 11 10 9 19 19 C 1.34782 * 128.08023 * 106.70688 * 18 11 10 20 20 O 1.21281 * 120.00365 * 179.40316 * 19 18 11 21 21 C 1.50706 * 119.99573 * 359.67443 * 19 18 11 22 22 C 1.52997 * 109.46852 * 179.72655 * 21 19 18 23 23 C 1.53005 * 109.46771 * 179.97438 * 22 21 19 24 24 C 1.52996 * 117.50139 * 243.74488 * 23 22 21 25 25 C 1.53005 * 117.49680 * 175.08505 * 23 22 21 26 26 H 0.96998 * 120.00376 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.74901 * 13.11645 * 10 9 7 28 28 H 1.08997 * 109.79517 * 252.41171 * 10 9 7 29 29 H 1.09005 * 110.50395 * 330.47283 * 13 11 10 30 30 H 1.08996 * 110.28209 * 208.22867 * 13 11 10 31 31 H 1.08996 * 110.36523 * 240.96800 * 14 13 11 32 32 H 1.08999 * 110.45342 * 118.70179 * 14 13 11 33 33 H 1.08998 * 110.51923 * 107.82416 * 17 9 7 34 34 H 1.08997 * 109.74645 * 346.59765 * 17 9 7 35 35 H 1.09000 * 109.46630 * 299.72828 * 21 19 18 36 36 H 1.08997 * 109.46714 * 59.72577 * 21 19 18 37 37 H 1.08998 * 109.47469 * 300.00303 * 22 21 19 38 38 H 1.08999 * 109.46819 * 60.00651 * 22 21 19 39 39 H 1.08996 * 115.54628 * 29.42209 * 23 22 21 40 40 H 1.09007 * 117.49752 * 0.02562 * 24 23 22 41 41 H 1.09001 * 117.49560 * 145.01919 * 24 23 22 42 42 H 1.08989 * 117.50114 * 214.98291 * 25 23 22 43 43 H 1.09003 * 117.49654 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0584 -1.2207 -0.2594 9 7 1.3661 -2.3646 0.3306 10 6 1.8520 -3.6609 -0.1684 11 6 1.8960 -4.6413 1.0169 12 1 2.2847 -5.6203 0.7362 13 6 2.7283 -3.9863 2.1367 14 6 1.7077 -3.1870 2.9733 15 6 0.3491 -3.4290 2.2776 16 1 -0.4777 -3.4554 2.9872 17 6 0.1549 -2.3452 1.2024 18 7 0.5228 -4.7215 1.5712 19 6 -0.3593 -5.7348 1.4633 20 8 -1.4491 -5.6487 1.9884 21 6 0.0109 -6.9775 0.6952 22 6 -1.1560 -7.9664 0.7322 23 6 -0.7803 -9.2277 -0.0482 24 6 -1.5958 -9.5523 -1.3013 25 6 -1.7750 -10.3903 -0.0329 26 1 -0.4850 0.8400 0.0004 27 1 2.8518 -3.5434 -0.5864 28 1 1.1749 -4.0391 -0.9342 29 1 3.4784 -3.3179 1.7138 30 1 3.2051 -4.7510 2.7497 31 1 1.9560 -2.1257 2.9617 32 1 1.6808 -3.5583 3.9977 33 1 -0.7397 -2.5618 0.6185 34 1 0.0584 -1.3688 1.6770 35 1 0.2307 -6.7132 -0.3392 36 1 0.8902 -7.4358 1.1479 37 1 -1.3758 -8.2305 1.7665 38 1 -2.0351 -7.5079 0.2795 39 1 0.2814 -9.4739 -0.0608 40 1 -2.3997 -8.8669 -1.5702 41 1 -1.0705 -10.0123 -2.1384 42 1 -1.3676 -11.4012 -0.0360 43 1 -2.6971 -10.2563 0.5327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017420701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:41 Heat of formation + Delta-G solvation = -0.948257 kcal Electronic energy + Delta-G solvation = -22593.966596 eV Core-core repulsion = 19446.714318 eV Total energy + Delta-G solvation = -3147.252278 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56721 -39.49529 -38.23127 -35.85448 -33.52071 -32.98126 -32.03354 -31.93082 -28.12988 -26.20326 -25.24402 -24.39966 -23.19211 -22.17727 -21.50774 -21.13920 -19.66796 -18.73953 -17.71613 -16.91951 -16.64387 -16.53527 -16.11731 -16.04835 -15.33058 -14.95106 -14.80234 -14.67179 -14.16149 -14.05397 -13.67860 -13.54352 -13.16594 -13.02236 -12.80255 -12.65664 -12.43039 -12.28407 -12.24731 -12.16271 -12.08924 -11.96532 -11.71948 -11.54005 -11.18091 -11.13346 -10.80777 -10.70231 -10.57191 -9.76498 -8.67441 -7.84600 -5.29045 1.48135 1.50362 1.59222 1.69221 2.04979 2.52610 2.94454 3.31050 3.45265 3.54392 3.81046 3.87455 3.96828 4.04925 4.10368 4.15439 4.24295 4.33522 4.40653 4.42458 4.57462 4.61415 4.67475 4.82027 4.83013 4.88291 4.92367 5.04988 5.06933 5.08720 5.10851 5.15208 5.18251 5.27178 5.30537 5.40038 5.46255 5.55556 5.62416 5.68070 6.33243 6.77399 7.08631 7.22626 7.80209 8.36687 9.22312 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029094 B = 0.004202 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.150749 B = 6662.309828 C = 6842.895157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.263 1.263 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.130 3.870 11 C 0.118 3.882 12 H 0.137 0.863 13 C -0.104 4.104 14 C -0.105 4.105 15 C 0.107 3.893 16 H 0.071 0.929 17 C 0.188 3.812 18 N -0.610 5.610 19 C 0.518 3.482 20 O -0.603 6.603 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.152 4.152 24 C -0.186 4.186 25 C -0.180 4.180 26 H 0.246 0.754 27 H 0.082 0.918 28 H 0.004 0.996 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.073 0.927 33 H -0.023 1.023 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.147 -17.980 1.885 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.187 1.187 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.326 5.326 10 C 0.004 3.996 11 C 0.014 3.986 12 H 0.154 0.846 13 C -0.142 4.142 14 C -0.144 4.144 15 C 0.002 3.998 16 H 0.090 0.910 17 C 0.062 3.938 18 N -0.343 5.343 19 C 0.309 3.691 20 O -0.485 6.485 21 C -0.158 4.158 22 C -0.107 4.107 23 C -0.170 4.170 24 C -0.223 4.223 25 C -0.217 4.217 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.022 0.978 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.092 0.908 33 H -0.005 1.005 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.144 0.856 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.441 -17.885 2.125 18.815 hybrid contribution -0.614 1.689 -0.260 1.816 sum 4.827 -16.196 1.865 17.003 Atomic orbital electron populations 1.70210 1.06958 1.25600 1.56453 1.25784 0.95860 1.01592 1.01893 0.85284 0.78214 0.79657 0.77339 1.21575 1.22752 1.18745 1.19572 0.92823 0.85244 1.40100 0.90139 1.44765 1.30590 1.02092 1.55195 1.21687 0.98403 0.85916 0.93569 1.23007 0.80645 1.00280 0.94673 0.84556 1.22242 0.97001 0.99061 0.95923 1.22218 0.92949 1.00969 0.98215 1.22874 0.98847 0.83752 0.94345 0.91044 1.21234 0.87009 0.95888 0.89712 1.49400 1.16359 1.15875 1.52628 1.21226 0.82897 0.84705 0.80232 1.90637 1.24253 1.82396 1.51204 1.21624 1.01466 0.91321 1.01363 1.20824 0.96527 0.93195 1.00117 1.22325 0.98546 0.95577 1.00586 1.23120 1.03083 1.03772 0.92348 1.23048 1.01033 0.96447 1.01161 0.94460 0.90009 0.97822 0.90427 0.89115 0.91905 0.90795 1.00457 0.92207 0.87848 0.85725 0.92059 0.93705 0.85633 0.89948 0.87434 0.87162 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.63 11.08 21.65 0.24 -56.39 16 2 C -0.06 -3.11 4.98 84.86 0.42 -2.69 16 3 Si 0.97 43.99 29.58 68.60 2.03 46.02 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.25 -12.80 9.66 84.04 0.81 -11.99 16 8 H 0.08 3.91 7.87 -2.91 -0.02 3.89 16 9 N -0.60 -28.68 2.32 -689.75 -1.60 -30.28 16 10 C 0.13 4.83 6.01 86.55 0.52 5.35 16 11 C 0.12 3.34 3.96 45.33 0.18 3.52 16 12 H 0.14 2.61 7.41 -2.38 -0.02 2.59 16 13 C -0.10 -2.83 6.16 31.41 0.19 -2.63 16 14 C -0.11 -3.49 6.19 31.56 0.20 -3.29 16 15 C 0.11 4.30 4.07 45.47 0.19 4.48 16 16 H 0.07 3.04 7.93 -2.39 -0.02 3.02 16 17 C 0.19 9.41 4.75 86.15 0.41 9.82 16 18 N -0.61 -21.36 2.74 -757.24 -2.07 -23.43 16 19 C 0.52 18.11 7.92 87.66 0.69 18.80 16 20 O -0.60 -26.42 16.29 -3.03 -0.05 -26.47 16 21 C -0.12 -2.76 4.66 29.85 0.14 -2.62 16 22 C -0.07 -1.62 4.79 30.59 0.15 -1.48 16 23 C -0.15 -2.65 5.73 -10.79 -0.06 -2.71 16 24 C -0.19 -3.18 10.18 30.62 0.31 -2.87 16 25 C -0.18 -2.90 10.26 30.62 0.31 -2.58 16 26 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 27 H 0.08 2.72 7.96 -2.39 -0.02 2.70 16 28 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.08 2.24 7.83 -2.38 -0.02 2.22 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.37 7.86 -2.39 -0.02 2.36 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 34 H 0.06 3.35 6.31 -2.39 -0.02 3.33 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.12 2.03 8.02 -2.39 -0.02 2.01 16 37 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 38 H 0.04 1.28 7.83 -2.39 -0.02 1.26 16 39 H 0.13 1.68 8.07 -2.39 -0.02 1.66 16 40 H 0.08 1.60 8.03 -2.38 -0.02 1.58 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -70.47 339.30 3.98 -66.49 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.97 Total: 14.94 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 4.46 Total: 9.12 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -3.43 Total: -110.09 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.47 3.98 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017420701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.542 kcal (2) G-P(sol) polarization free energy of solvation -70.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds