Wall clock time and date at job start Tue Mar 31 2020 00:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00392 * 2 1 4 4 H 1.48498 * 109.47143 * 269.99755 * 3 2 1 5 5 H 1.48500 * 109.47132 * 29.99997 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99840 * 3 2 1 7 7 C 1.38816 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99970 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00304 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.91708 * 37.44448 * 10 9 7 12 12 C 1.55152 * 111.00822 * 161.34635 * 10 9 7 13 13 C 1.54336 * 103.02341 * 153.37874 * 12 10 9 14 14 N 1.47027 * 107.26443 * 338.14639 * 13 12 10 15 15 C 1.34780 * 125.64687 * 178.85045 * 14 13 12 16 16 O 1.21616 * 119.99618 * 179.69105 * 15 14 13 17 17 C 1.47102 * 120.00126 * 359.68639 * 15 14 13 18 18 C 1.32992 * 120.00074 * 173.01473 * 17 15 14 19 19 C 1.51276 * 120.83900 * 347.80730 * 18 17 15 20 20 C 1.53226 * 108.53434 * 231.32494 * 19 18 17 21 21 C 1.52964 * 109.41305 * 305.39285 * 20 19 18 22 22 C 1.52951 * 109.82048 * 63.59251 * 21 20 19 23 23 C 1.51263 * 120.84843 * 167.80343 * 18 17 15 24 24 C 1.47420 * 108.70208 * 358.58104 * 14 13 12 25 25 H 0.97002 * 119.99468 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99502 * 359.97438 * 9 7 2 27 27 H 1.09000 * 110.72501 * 271.94046 * 12 10 9 28 28 H 1.09001 * 110.71878 * 35.03428 * 12 10 9 29 29 H 1.09001 * 109.99393 * 218.66748 * 13 12 10 30 30 H 1.09004 * 109.78128 * 97.49629 * 13 12 10 31 31 H 1.08000 * 119.99997 * 353.01763 * 17 15 14 32 32 H 1.08996 * 109.61811 * 111.61382 * 19 18 17 33 33 H 1.09008 * 109.63674 * 351.04142 * 19 18 17 34 34 H 1.09000 * 109.48117 * 185.40604 * 20 19 18 35 35 H 1.09000 * 109.48463 * 65.37440 * 20 19 18 36 36 H 1.09007 * 109.41148 * 183.69963 * 21 20 19 37 37 H 1.09002 * 109.41008 * 303.55436 * 21 20 19 38 38 H 1.09002 * 109.48719 * 56.37832 * 22 21 20 39 39 H 1.08998 * 109.48678 * 176.41226 * 22 21 20 40 40 H 1.08993 * 109.63034 * 8.94768 * 23 18 17 41 41 H 1.09004 * 109.62505 * 248.37222 * 23 18 17 42 42 H 1.08998 * 110.37094 * 143.19767 * 24 14 13 43 43 H 1.09001 * 110.37045 * 265.52181 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 1 2.9520 -3.5895 0.6214 12 6 1.1470 -4.8244 0.4648 13 6 1.7796 -6.0528 -0.2229 14 7 2.5599 -5.5588 -1.3669 15 6 3.2838 -6.3200 -2.2113 16 8 3.8880 -5.8019 -3.1308 17 6 3.3432 -7.7774 -2.0206 18 6 3.9403 -8.5432 -2.9293 19 6 4.3201 -7.9865 -4.2837 20 6 3.7679 -8.9198 -5.3662 21 6 4.2613 -10.3447 -5.1091 22 6 3.7067 -10.8532 -3.7774 23 6 4.2568 -9.9927 -2.6350 24 6 2.4140 -4.0937 -1.4413 25 1 -0.4849 0.8401 0.0004 26 1 0.3555 -2.3880 0.0005 27 1 1.1757 -4.9293 1.5493 28 1 0.1236 -4.6752 0.1202 29 1 0.9983 -6.7285 -0.5711 30 1 2.4354 -6.5705 0.4772 31 1 2.9020 -8.2255 -1.1426 32 1 5.4057 -7.9325 -4.3658 33 1 3.8911 -6.9917 -4.4043 34 1 4.1137 -8.5864 -6.3446 35 1 2.6783 -8.9022 -5.3402 36 1 3.9229 -10.9962 -5.9149 37 1 5.3506 -10.3497 -5.0723 38 1 2.6186 -10.7897 -3.7887 39 1 4.0088 -11.8900 -3.6298 40 1 3.7873 -10.2868 -1.6964 41 1 5.3365 -10.1247 -2.5646 42 1 3.3510 -3.6346 -1.7562 43 1 1.6103 -3.8268 -2.1276 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018591404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:55 Heat of formation + Delta-G solvation = -16.660711 kcal Electronic energy + Delta-G solvation = -21533.990506 eV Core-core repulsion = 18386.056885 eV Total energy + Delta-G solvation = -3147.933621 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98517 -38.43241 -37.04689 -34.12297 -32.78654 -31.52746 -31.13927 -29.60765 -28.08979 -26.48575 -24.02337 -23.09675 -22.63962 -21.41507 -20.20413 -19.52254 -18.14890 -17.24071 -16.86924 -15.92630 -15.54884 -14.96636 -14.59148 -14.52154 -14.28724 -13.83874 -13.50477 -13.35965 -13.15774 -12.95707 -12.74183 -12.46738 -12.39698 -12.13099 -11.96199 -11.51687 -11.25878 -11.08124 -11.05095 -10.85442 -10.76287 -10.69854 -10.46505 -10.30966 -10.02609 -9.76304 -9.27056 -9.03206 -8.92798 -8.22688 -7.06902 -5.83245 -3.13811 1.38404 3.31795 3.42467 3.46430 3.48125 3.49230 4.46311 4.52375 4.55736 4.69341 4.78432 4.95389 4.97718 5.06984 5.22266 5.22537 5.27530 5.34594 5.40181 5.44611 5.53584 5.64809 5.69188 5.75113 5.80043 5.81810 5.87352 5.90247 5.96790 6.12776 6.14392 6.20213 6.28115 6.40250 6.46541 6.57407 6.66766 6.71602 6.91753 7.66880 7.89125 8.34477 8.48184 9.46558 9.99825 10.34809 11.38920 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.003166 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.954648 B = 8843.054639 C = 9300.394204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.713 5.713 10 C 0.172 3.828 11 H 0.064 0.936 12 C -0.141 4.141 13 C 0.106 3.894 14 N -0.610 5.610 15 C 0.557 3.443 16 O -0.545 6.545 17 C -0.223 4.223 18 C -0.028 4.028 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.092 4.092 24 C 0.082 3.918 25 H 0.257 0.743 26 H 0.387 0.613 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -22.782 -4.380 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.059 3.941 11 H 0.081 0.919 12 C -0.179 4.179 13 C -0.017 4.017 14 N -0.343 5.343 15 C 0.349 3.651 16 O -0.426 6.426 17 C -0.243 4.243 18 C -0.030 4.030 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.129 4.129 24 C -0.043 4.043 25 H 0.066 0.934 26 H 0.221 0.779 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.014 -22.361 -4.861 23.660 hybrid contribution 0.026 0.819 0.093 0.824 sum 6.040 -21.543 -4.768 22.876 Atomic orbital electron populations 1.69662 1.05163 1.25899 1.57129 1.24769 0.95540 0.97848 1.02425 0.86166 0.78683 0.83556 0.77639 1.21556 1.21711 1.20634 1.19260 0.91143 0.83906 1.43472 0.90946 1.42302 1.05783 0.99409 1.87768 1.21313 0.94577 0.86075 0.92107 0.91853 1.22902 1.00320 0.94289 1.00421 1.21994 0.94530 0.97360 0.87862 1.48479 1.47623 1.09162 1.29028 1.18218 0.78617 0.87087 0.81221 1.90600 1.46147 1.74617 1.31242 1.22356 1.06900 0.92810 1.02275 1.22663 0.90954 0.94752 0.94651 1.21599 1.01817 1.02228 0.90125 1.21602 1.00745 0.94464 0.98640 1.21567 1.00803 0.96726 0.96960 1.21570 1.00829 0.98639 0.94391 1.20947 1.01708 0.91331 0.98892 1.23379 1.01838 0.77327 1.01759 0.93363 0.77861 0.90206 0.90471 0.91882 0.91770 0.85818 0.90817 0.85977 0.91627 0.92099 0.92084 0.91915 0.91743 0.91682 0.90889 0.89906 0.91115 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.76 9.98 -15.06 -0.15 -6.91 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.40 5.28 -51.35 -0.27 -17.67 16 10 C 0.17 3.34 3.69 -65.79 -0.24 3.09 16 11 H 0.06 1.26 8.13 -51.92 -0.42 0.84 16 12 C -0.14 -2.11 6.57 -24.89 -0.16 -2.28 16 13 C 0.11 1.38 6.09 -3.05 -0.02 1.37 16 14 N -0.61 -10.00 3.33 -171.90 -0.57 -10.57 16 15 C 0.56 9.21 7.65 -12.66 -0.10 9.12 16 16 O -0.54 -10.62 13.47 5.26 0.07 -10.55 16 17 C -0.22 -2.81 9.16 -37.81 -0.35 -3.15 16 18 C -0.03 -0.32 5.39 -100.61 -0.54 -0.86 16 19 C -0.12 -1.48 5.29 -27.48 -0.15 -1.63 16 20 C -0.12 -1.14 5.94 -26.63 -0.16 -1.30 16 21 C -0.12 -0.96 5.81 -26.78 -0.16 -1.12 16 22 C -0.12 -0.86 5.94 -26.63 -0.16 -1.02 16 23 C -0.09 -0.75 6.04 -27.49 -0.17 -0.92 16 24 C 0.08 1.59 6.60 -2.53 -0.02 1.58 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.39 9.94 7.71 -40.82 -0.31 9.62 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 1.18 7.99 -51.93 -0.42 0.77 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 31 H 0.12 1.27 7.29 -52.49 -0.38 0.88 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.12 1.89 4.79 -52.86 -0.25 1.64 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -31.04 341.33 -9.62 -40.65 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.23 Total: 7.08 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.46 Total: -4.40 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.12 Total: -55.20 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.07 Total: -10.55 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.04 -9.62 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018591404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.992 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds