Wall clock time and date at job start Tue Mar 31 2020 00:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00392 * 2 1 4 4 H 1.48498 * 109.47143 * 269.99755 * 3 2 1 5 5 H 1.48500 * 109.47132 * 29.99997 * 3 2 1 6 6 H 1.48503 * 109.46992 * 149.99840 * 3 2 1 7 7 C 1.38816 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99970 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00304 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.91708 * 37.44448 * 10 9 7 12 12 C 1.55152 * 111.00822 * 161.34635 * 10 9 7 13 13 C 1.54336 * 103.02341 * 153.37874 * 12 10 9 14 14 N 1.47027 * 107.26443 * 338.14639 * 13 12 10 15 15 C 1.34780 * 125.64687 * 178.85045 * 14 13 12 16 16 O 1.21616 * 119.99618 * 179.69105 * 15 14 13 17 17 C 1.47102 * 120.00126 * 359.68639 * 15 14 13 18 18 C 1.32992 * 120.00074 * 173.01473 * 17 15 14 19 19 C 1.51276 * 120.83900 * 347.80730 * 18 17 15 20 20 C 1.53226 * 108.53434 * 231.32494 * 19 18 17 21 21 C 1.52964 * 109.41305 * 305.39285 * 20 19 18 22 22 C 1.52951 * 109.82048 * 63.59251 * 21 20 19 23 23 C 1.51263 * 120.84843 * 167.80343 * 18 17 15 24 24 C 1.47420 * 108.70208 * 358.58104 * 14 13 12 25 25 H 0.97002 * 119.99468 * 359.97438 * 1 2 3 26 26 H 0.96998 * 119.99502 * 359.97438 * 9 7 2 27 27 H 1.09000 * 110.72501 * 271.94046 * 12 10 9 28 28 H 1.09001 * 110.71878 * 35.03428 * 12 10 9 29 29 H 1.09001 * 109.99393 * 218.66748 * 13 12 10 30 30 H 1.09004 * 109.78128 * 97.49629 * 13 12 10 31 31 H 1.08000 * 119.99997 * 353.01763 * 17 15 14 32 32 H 1.08996 * 109.61811 * 111.61382 * 19 18 17 33 33 H 1.09008 * 109.63674 * 351.04142 * 19 18 17 34 34 H 1.09000 * 109.48117 * 185.40604 * 20 19 18 35 35 H 1.09000 * 109.48463 * 65.37440 * 20 19 18 36 36 H 1.09007 * 109.41148 * 183.69963 * 21 20 19 37 37 H 1.09002 * 109.41008 * 303.55436 * 21 20 19 38 38 H 1.09002 * 109.48719 * 56.37832 * 22 21 20 39 39 H 1.08998 * 109.48678 * 176.41226 * 22 21 20 40 40 H 1.08993 * 109.63034 * 8.94768 * 23 18 17 41 41 H 1.09004 * 109.62505 * 248.37222 * 23 18 17 42 42 H 1.08998 * 110.37094 * 143.19767 * 24 14 13 43 43 H 1.09001 * 110.37045 * 265.52181 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 1 2.9520 -3.5895 0.6214 12 6 1.1470 -4.8244 0.4648 13 6 1.7796 -6.0528 -0.2229 14 7 2.5599 -5.5588 -1.3669 15 6 3.2838 -6.3200 -2.2113 16 8 3.8880 -5.8019 -3.1308 17 6 3.3432 -7.7774 -2.0206 18 6 3.9403 -8.5432 -2.9293 19 6 4.3201 -7.9865 -4.2837 20 6 3.7679 -8.9198 -5.3662 21 6 4.2613 -10.3447 -5.1091 22 6 3.7067 -10.8532 -3.7774 23 6 4.2568 -9.9927 -2.6350 24 6 2.4140 -4.0937 -1.4413 25 1 -0.4849 0.8401 0.0004 26 1 0.3555 -2.3880 0.0005 27 1 1.1757 -4.9293 1.5493 28 1 0.1236 -4.6752 0.1202 29 1 0.9983 -6.7285 -0.5711 30 1 2.4354 -6.5705 0.4772 31 1 2.9020 -8.2255 -1.1426 32 1 5.4057 -7.9325 -4.3658 33 1 3.8911 -6.9917 -4.4043 34 1 4.1137 -8.5864 -6.3446 35 1 2.6783 -8.9022 -5.3402 36 1 3.9229 -10.9962 -5.9149 37 1 5.3506 -10.3497 -5.0723 38 1 2.6186 -10.7897 -3.7887 39 1 4.0088 -11.8900 -3.6298 40 1 3.7873 -10.2868 -1.6964 41 1 5.3365 -10.1247 -2.5646 42 1 3.3510 -3.6346 -1.7562 43 1 1.6103 -3.8268 -2.1276 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018591404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:55 Heat of formation + Delta-G solvation = -35.299297 kcal Electronic energy + Delta-G solvation = -21534.798736 eV Core-core repulsion = 18386.056885 eV Total energy + Delta-G solvation = -3148.741850 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21559 -39.46395 -38.28801 -35.95099 -33.76488 -33.22889 -31.89761 -31.12651 -29.49302 -27.64105 -25.80655 -24.08430 -23.81322 -22.32641 -21.62526 -20.61625 -19.47275 -18.92540 -18.12457 -17.37838 -16.57912 -16.32076 -16.02504 -15.62337 -15.30088 -15.13870 -14.83381 -14.64651 -14.33019 -14.30160 -13.82678 -13.71002 -13.48069 -13.24835 -13.13617 -12.90240 -12.76109 -12.53505 -12.33469 -12.10949 -11.97439 -11.79889 -11.77481 -11.62472 -11.60026 -11.17415 -11.02948 -10.40800 -9.96457 -9.54982 -9.09030 -7.99511 -5.29539 0.38253 1.45863 1.47665 1.55681 2.05132 2.28105 2.53948 3.31705 3.55910 3.65527 3.79098 3.89667 4.01123 4.05941 4.09542 4.22567 4.26834 4.34598 4.36935 4.46462 4.51856 4.54746 4.64814 4.72130 4.81589 4.85448 4.98099 5.01006 5.01666 5.13997 5.17828 5.18818 5.19761 5.26690 5.34858 5.44264 5.44886 5.51753 5.60163 5.72420 6.22676 6.64477 7.21192 7.29710 8.01067 8.25610 9.23280 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035437 B = 0.003166 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.954648 B = 8843.054639 C = 9300.394204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.724 5.724 10 C 0.165 3.835 11 H 0.061 0.939 12 C -0.129 4.129 13 C 0.109 3.891 14 N -0.613 5.613 15 C 0.545 3.455 16 O -0.587 6.587 17 C -0.235 4.235 18 C -0.016 4.016 19 C -0.127 4.127 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.088 4.088 24 C 0.094 3.906 25 H 0.253 0.747 26 H 0.378 0.622 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.041 0.959 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 -25.953 -3.456 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.800 3.200 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.363 5.363 10 C 0.054 3.946 11 H 0.079 0.921 12 C -0.167 4.167 13 C -0.013 4.013 14 N -0.346 5.346 15 C 0.340 3.660 16 O -0.472 6.472 17 C -0.256 4.256 18 C -0.018 4.018 19 C -0.164 4.164 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.033 4.033 25 H 0.062 0.938 26 H 0.211 0.789 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.060 0.940 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.677 -25.589 -3.920 26.735 hybrid contribution -0.108 1.741 -0.294 1.769 sum 6.568 -23.848 -4.214 25.092 Atomic orbital electron populations 1.69798 1.06468 1.26254 1.58959 1.25536 0.96397 1.00998 1.03249 0.85187 0.77868 0.79652 0.77337 1.21750 1.21765 1.19414 1.19589 0.91380 0.85236 1.41798 0.90932 1.42426 1.05521 1.00456 1.87905 1.21465 0.95277 0.85821 0.91998 0.92103 1.22844 0.99079 0.92795 1.01993 1.22215 0.95397 0.96675 0.87036 1.48544 1.48260 1.07524 1.30243 1.19038 0.77761 0.88864 0.80356 1.90606 1.47848 1.75777 1.32942 1.22352 1.08999 0.89999 1.04235 1.23019 0.88792 0.96612 0.93385 1.21514 1.01478 1.01174 0.92193 1.21577 1.00270 0.95567 0.97760 1.21568 1.01091 0.95129 0.98065 1.21589 1.00674 0.99599 0.93367 1.21047 1.02639 0.88613 1.00220 1.22907 0.99392 0.79960 1.01018 0.93817 0.78878 0.87949 0.90880 0.89152 0.88570 0.82569 0.91059 0.89689 0.91584 0.92675 0.90725 0.91479 0.91913 0.89403 0.88858 0.88770 0.93999 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.63 13.06 21.65 0.28 -58.35 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -13.86 9.98 84.03 0.84 -13.02 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.72 -36.14 5.28 -316.38 -1.67 -37.81 16 10 C 0.17 6.46 3.69 46.38 0.17 6.63 16 11 H 0.06 2.42 8.13 -2.38 -0.02 2.40 16 12 C -0.13 -3.63 6.57 31.79 0.21 -3.42 16 13 C 0.11 2.52 6.09 86.73 0.53 3.04 16 14 N -0.61 -19.84 3.33 -816.01 -2.71 -22.56 16 15 C 0.55 18.07 7.65 86.57 0.66 18.73 16 16 O -0.59 -24.05 13.47 -4.08 -0.05 -24.11 16 17 C -0.24 -5.44 9.16 23.43 0.21 -5.22 16 18 C -0.02 -0.33 5.39 -17.25 -0.09 -0.43 16 19 C -0.13 -3.10 5.29 30.11 0.16 -2.94 16 20 C -0.11 -2.12 5.94 30.66 0.18 -1.94 16 21 C -0.12 -1.56 5.81 30.57 0.18 -1.39 16 22 C -0.11 -1.25 5.94 30.66 0.18 -1.07 16 23 C -0.09 -1.11 6.04 30.11 0.18 -0.93 16 24 C 0.09 3.77 6.60 86.86 0.57 4.35 16 25 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.38 19.95 7.71 -92.71 -0.71 19.23 16 27 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.15 7.99 -2.39 -0.02 2.13 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.10 1.69 8.11 -2.39 -0.02 1.67 16 31 H 0.16 2.52 7.29 -2.91 -0.02 2.50 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 2.79 4.79 -17.22 -0.08 2.71 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.86 7.92 -2.39 -0.02 0.84 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 43 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.55 341.33 2.52 -68.03 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.20 Total: 27.35 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.45 Total: -1.12 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.10 Total: -118.71 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.05 Total: -24.11 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -70.55 2.52 -68.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018591404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.726 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds