Wall clock time and date at job start Mon Mar 30 2020 23:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.88411 * 322.57013 * 10 9 7 12 12 C 1.55156 * 111.00616 * 86.44704 * 10 9 7 13 13 C 1.54324 * 102.94182 * 153.57826 * 12 10 9 14 14 N 1.47025 * 107.27204 * 337.81014 * 13 12 10 15 15 C 1.34773 * 125.64648 * 178.89115 * 14 13 12 16 16 O 1.21286 * 119.99671 * 180.02562 * 15 14 13 17 17 C 1.50700 * 120.00500 * 0.02599 * 15 14 13 18 18 C 1.50702 * 109.47339 * 179.97438 * 17 15 14 19 19 C 1.29445 * 117.95988 * 94.73523 * 18 17 15 20 20 C 1.50064 * 124.07911 * 180.23553 * 19 18 17 21 21 C 1.53026 * 110.19703 * 343.32354 * 20 19 18 22 22 C 1.53387 * 108.44278 * 49.24569 * 21 20 19 23 23 C 1.50063 * 117.96558 * 275.00247 * 18 17 15 24 24 C 1.47420 * 108.70199 * 358.94334 * 14 13 12 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.72540 * 271.94396 * 12 10 9 28 28 H 1.09008 * 110.71885 * 35.22097 * 12 10 9 29 29 H 1.09003 * 109.88610 * 97.22824 * 13 12 10 30 30 H 1.09000 * 109.88795 * 218.23998 * 13 12 10 31 31 H 1.08998 * 109.46921 * 300.00369 * 17 15 14 32 32 H 1.09007 * 109.46874 * 59.99861 * 17 15 14 33 33 H 1.08005 * 117.96270 * 0.47255 * 19 18 17 34 34 H 1.09001 * 109.48628 * 223.00235 * 20 19 18 35 35 H 1.09001 * 109.06426 * 103.37676 * 20 19 18 36 36 H 1.09003 * 109.64040 * 289.56160 * 21 20 19 37 37 H 1.09000 * 109.81162 * 169.03326 * 21 20 19 38 38 H 1.08998 * 109.64571 * 172.87890 * 22 21 20 39 39 H 1.09001 * 109.64037 * 52.24516 * 22 21 20 40 40 H 1.09003 * 109.36145 * 283.05677 * 23 18 17 41 41 H 1.09002 * 109.35941 * 42.77531 * 23 18 17 42 42 H 1.09003 * 110.36322 * 265.29031 * 24 14 13 43 43 H 1.08995 * 110.36857 * 142.97006 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.6060 -3.2118 0.6197 12 6 4.3132 -2.9969 -1.4446 13 6 5.5909 -3.8542 -1.3259 14 7 6.3227 -3.3851 -0.1402 15 6 7.4832 -3.8940 0.3189 16 8 7.9998 -3.4264 1.3116 17 6 8.1388 -5.0441 -0.4012 18 6 9.4134 -5.4206 0.3093 19 6 9.3630 -6.3765 1.1806 20 6 10.5451 -6.8584 1.9696 21 6 11.8447 -6.3742 1.3230 22 6 11.7204 -4.8698 1.0512 23 6 10.6609 -4.6598 -0.0328 24 6 5.5763 -2.2666 0.4641 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3620 0.0007 27 1 3.4657 -3.6087 -1.7537 28 1 4.4666 -2.1700 -2.1382 29 1 5.3233 -4.9039 -1.2051 30 1 6.2057 -3.7288 -2.2173 31 1 7.4625 -5.8988 -0.4122 32 1 8.3677 -4.7486 -1.4251 33 1 8.4117 -6.8600 1.3475 34 1 10.5413 -7.9480 2.0013 35 1 10.4790 -6.4671 2.9848 36 1 12.0064 -6.9040 0.3842 37 1 12.6826 -6.5570 1.9958 38 1 12.6782 -4.4790 0.7079 39 1 11.4175 -4.3564 1.9638 40 1 11.0478 -5.0116 -0.9892 41 1 10.4276 -3.5976 -0.1062 42 1 5.9600 -1.3137 0.0997 43 1 5.6401 -2.3114 1.5513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018623133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:19 Heat of formation + Delta-G solvation = -39.341523 kcal Electronic energy + Delta-G solvation = -21524.088774 eV Core-core repulsion = 18375.171640 eV Total energy + Delta-G solvation = -3148.917135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22633 -39.54950 -38.45100 -36.03676 -33.95529 -33.42551 -31.62263 -31.33378 -29.91183 -28.04913 -25.30073 -24.22860 -23.98798 -22.56126 -21.74461 -20.26698 -19.73329 -18.50775 -18.02252 -17.57448 -16.78520 -16.46115 -16.08295 -15.74026 -15.43578 -15.05582 -14.78314 -14.63671 -14.50712 -14.32745 -13.73215 -13.62800 -13.46528 -13.38461 -13.20909 -13.07946 -12.97412 -12.73374 -12.58728 -12.26142 -12.14999 -11.83007 -11.65333 -11.63645 -11.32753 -11.09943 -11.00894 -10.96390 -9.69412 -9.64674 -9.36566 -8.04218 -5.39350 1.23713 1.37965 1.40798 1.47343 1.62310 2.06427 2.46800 3.25439 3.50347 3.57530 3.67664 3.80648 3.85823 4.05153 4.08581 4.18162 4.27162 4.31918 4.36724 4.43341 4.47158 4.55439 4.66450 4.69995 4.74830 4.76130 4.83767 4.95910 5.00911 5.04061 5.10263 5.17329 5.21249 5.23938 5.33237 5.38585 5.47721 5.74359 5.75959 6.11237 6.19113 6.54147 7.03465 7.14483 7.77875 7.96558 9.16667 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039806 B = 0.003143 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.240908 B = 8905.403554 C = 9147.053352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.251 1.251 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.063 0.937 9 N -0.744 5.744 10 C 0.167 3.833 11 H 0.060 0.940 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.617 5.617 15 C 0.523 3.477 16 O -0.583 6.583 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.155 4.155 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.080 4.080 24 C 0.105 3.895 25 H 0.258 0.742 26 H 0.366 0.634 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.221 -14.832 -3.795 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.176 1.176 6 H -0.222 1.222 7 C -0.360 4.360 8 H 0.081 0.919 9 N -0.387 5.387 10 C 0.058 3.942 11 H 0.078 0.922 12 C -0.186 4.186 13 C -0.015 4.015 14 N -0.351 5.351 15 C 0.314 3.686 16 O -0.463 6.463 17 C -0.135 4.135 18 C -0.116 4.116 19 C -0.173 4.173 20 C -0.128 4.128 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.117 4.117 24 C -0.019 4.019 25 H 0.067 0.933 26 H 0.200 0.800 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.340 -14.708 -3.251 28.624 hybrid contribution -0.524 1.502 0.298 1.618 sum 23.816 -13.206 -2.953 27.392 Atomic orbital electron populations 1.69868 1.07040 1.26713 1.59464 1.25447 0.96044 1.01083 1.02565 0.85478 0.78758 0.79986 0.77962 1.20859 1.17566 1.22182 1.18970 0.82058 0.93613 1.41383 0.91926 1.42567 1.02679 1.03335 1.90128 1.21417 0.89408 0.87878 0.95542 0.92238 1.23194 0.97062 0.99884 0.98483 1.22228 0.92507 0.99272 0.87502 1.48572 1.22525 1.34365 1.29608 1.21027 0.78987 0.84385 0.84204 1.90687 1.64128 1.63209 1.28261 1.20873 0.95625 0.96325 1.00719 1.20484 0.94861 0.97139 0.99116 1.22093 0.99554 0.98779 0.96882 1.20467 0.92751 1.01253 0.98287 1.21589 0.97035 0.95207 1.01454 1.21587 0.98730 0.97195 0.98296 1.20358 0.92898 0.98735 0.99681 1.22213 0.91428 0.90111 0.98147 0.93276 0.80022 0.90100 0.91116 0.89028 0.88713 0.86396 0.86030 0.88032 0.89615 0.91810 0.90853 0.90702 0.90509 0.93755 0.89225 0.92862 0.91797 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.93 13.97 21.65 0.30 -61.62 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.95 44.95 27.74 68.60 1.90 46.85 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 6 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.23 -12.66 10.47 84.03 0.88 -11.78 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 9 N -0.74 -33.58 5.08 -316.39 -1.61 -35.19 16 10 C 0.17 6.02 3.68 46.38 0.17 6.19 16 11 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 12 C -0.15 -4.15 6.65 31.78 0.21 -3.94 16 13 C 0.11 2.20 6.49 86.73 0.56 2.77 16 14 N -0.62 -16.61 3.33 -811.80 -2.70 -19.31 16 15 C 0.52 14.40 7.84 87.66 0.69 15.08 16 16 O -0.58 -21.20 16.29 -3.05 -0.05 -21.25 16 17 C -0.10 -1.73 4.90 29.10 0.14 -1.59 16 18 C -0.12 -2.28 4.33 -15.10 -0.07 -2.34 16 19 C -0.15 -2.96 9.37 27.03 0.25 -2.71 16 20 C -0.09 -1.44 6.11 29.66 0.18 -1.26 16 21 C -0.12 -1.59 6.01 30.73 0.18 -1.40 16 22 C -0.12 -2.05 6.01 30.73 0.18 -1.86 16 23 C -0.08 -1.45 5.80 29.66 0.17 -1.28 16 24 C 0.11 3.45 6.53 86.85 0.57 4.01 16 25 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.37 16.05 5.57 -92.71 -0.52 15.54 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 1.63 7.80 -2.39 -0.02 1.61 16 32 H 0.12 1.59 8.11 -2.38 -0.02 1.57 16 33 H 0.10 1.86 7.74 -2.91 -0.02 1.84 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 40 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 2.11 8.00 -2.39 -0.02 2.09 16 43 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 Total: -1.00 -71.41 344.25 2.85 -68.56 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.40 Total: 25.05 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 4.60 Total: -3.10 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.01 Total: -116.12 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Total: -71.41 2.85 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018623133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.220 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds